Cette thèse s’inscrit dans le contexte de l’ANR ISABEAU (Innovating for Structural Adhesive Bonding Evaluation and Analysis with Ultrasounds, associant des physico-chimistes et des acousticiens) et cherche à apporter des connaissances nouvelles sur l’évaluation par ultrasons du niveau d’adhésion d’un collage structural par ondes de Lamb. La première partie porte sur l’aspect cohésif et particulièrement sur l’influence du paramètre de réticulation de réseaux époxys sur les courbes de dispersion des ondes de Lamb. La deuxième partie est consacrée à la caractérisation de niveaux d’adhésion dans une structure bicouche Aluminium Epoxy en tenant compte aussi bien des aspects cohésifs qu’adhésifs. Des échantillons à niveau d’adhésion connus et maîtrisés sont réalisés avec l’aide de physico-chimistes, où l’époxy est partiellement ou totalement réticulé, et où l’interface substrat adhésif a subit différents traitements chimiques et/ou mécaniques. Les résultats expérimentaux sont confrontés à ceux issus du modèle rhéologique de Jones résolu par éléments finis. Enfin, la troisième partie porte sur l’étude d’un assemblage tricouche Aluminium/Epoxy/Aluminium et cherche à qualifier différents niveaux d’adhésion à l’aide du modèle de Jones par ondes guidées et également par l’étude des fréquences de coupure des modes verticaux de la structure. / This thesis is in the context of the ANR ISABEAU (Innovating for Structural Adhesive Bonding Evaluation and Analysis with Ultrasounds, with the association of physico-chemists and acousticians) and seeks to bring new knowledge of the ultrasonic evaluation of the level of adhesion of structural bonding using Lamb waves. The first part focuses on the cohesive aspect, in particular on the influence of the crosslinking parameter of the polymer on the Lamb waves dispersion curves. The second part is dedicated to the evaluation of the adhesion level of a bi-layer Aluminum Epoxy taking into account the both cohesive and adhesive aspects. Samples of controlled and known adhesion levels are manufactured with the help of physico-chemists, where the crosslinking of the epoxy is partial or total, and the interface substrate-adhesive have been treated chemically and/or mechanically. The experimental results are compared to those obtained from a predictive model based on the rheological model of Jones solved by finite elements method. Finally, the third part focuses on the study of tri-layers Aluminum/Epoxy/Aluminum, looking for the qualification of different levels of adhesion with the Jones model using guided waves as well as the cut-off frequencies of the structure.

Eukaryotic translation initiation is a complex and highly regulated process involving the ribosome, mRNA and proteins called eukaryotic initiation factors (eIFs). The overall aim of translation initiation is to position the ribosome at the initiation codon of the mRNA. eIF2, in its GTP-bound conformation, binds the initiator tRNA (Met-tRNAiMet) and delivers it to the 40S ribosomal subunit. When the anticodon of the tRNA is bound to the initiation codon, the GTP on eIF2 is hydrolysed to GDP. The guanine nucleotide exchange factor (GEF) eIF2B regenerates eIF2-GTP. eIF2 and eIF2B are multisubunit/multidomain protein complexes. Because information regarding the interface between each complex is limited, particularly the interface on the eIF2γ subunit, which binds the guanine-nucleotides and Met-tRNAiMet, interactions between the minimal GEF domain of eIF2Bε, εGEF, and eIF2 were mapped using mutagenesis and an in vitro cysteine cross-linking approach, with the cross-linker Mts-Atf-Biotin. Site-directed mutagenesis (SDM) was used to mutate five N-terminal and five C-terminal surface-exposed εGEF residues to cysteines. The mutant alleles were analysed in Saccharomyces cerevisiae and it was found that the gcd6-R574C allele was lethal and the gcd6-T572C was Gcd-. Further gcd6-R574 mutant alleles were also found to be lethal in yeast but expressed in vivo.εGEF-R574C has dramatically reduced GEF activity in vitro and binding assays showed that this mutant has significantly reduced affinity for eIF2. The εGEF-T572C and εGEF-S576C mutants also have severe and minor eIF2-binding defects respectively, while the C-terminal εGEF-Cys mutants have slightly reduced affinity for eIF2. The N-terminal εGEF-Cys mutants cross-link specifically to eIF2γ, while the C-terminal εGEF-Cys mutants interact predominantly with eIF2β. From the data obtained in this study, we propose a new model for eIF2B-mediated guanine-nucleotide exchange that reduces the importance of eIF2β and suggests εGEF resembles other GEFs in binding primarily to its G protein partner eIF2γ.

[EN] The development of new and more complex polymeric materials involves challenging problems to basic sciences. The relationship between structure and molecular dynamics assumes great importance for the future development of novel technologies based on such polymers. Thus, the understanding of how small changes in the chemical structure affect the properties of the material is essential to progress in the technological and scientific area. An in-depth analysis of the molecular mobility leads to establish the structure-properties relationships. On this basis, the main aim of the present work is to study the molecular mobility of two different families of polymeric materials. For this purpose, the experimental techniques mainly used were Differential Scanning Calorimetry (DSC) and Dielectric Relaxation Spectroscopy (DRS). The first family of polymers characterized was a series of chemically cross-linked copolymers composed by Vinylpyrrolidone (VP) and Butyl Acrylate (BA) monomers. In the first place, the influence of the monomer molar ratio (XVP/YBA) on the copolymer properties was studied. Thus, a Fourier Transform Infrared Spectroscopy (FTIR) analysis verified dipole-dipole interactions between amide groups. The influence of these interactions on several parameters related to the molecular mobility was evidenced by the DSC, DRS and Dynamic Mechanical Analysis (DMA) techniques. Secondly, the effect of the cross-link density on the molecular dynamics of 60VP/40BA copolymers was analyzed using DSC and DRS. One single glass transition was detected by DSC measurements. The DRS analysis showed that an increase of the cross-linking produced a typical effect on the alpha process dynamics. However, the beta process, which possessed typical features of pure JG relaxation, unexpectedly lost the intermolecular character for the highest cross-linker content. The fastest gamma process was relatively unaffected. The second family of polymeric materials studied was a series of segmented polycarbonatediol polyurethane (PUPH) modified with different amounts of expanded graphite (EG) conductive filler. Scanning Electron Microscopy (SEM), X-ray diffraction measurements and FTIR analysis demonstrated a homogeneous dispersion of the EG filler in the matrix. DRS was used to study the dielectric properties of the PUPH/EG composites. The dielectric permittivity of the composites showed an insulator to conductor percolation transition with the increase of the EG content (2030 wt%). The addition of expanded graphite to the matrix caused a dramatic increase in the electrical conductivity of ten orders of magnitude, which is an indication of percolative behavior. / [ES] El desarrollo de nuevos materiales poliméricos de mayor complejidad produce un desafío cada vez mayor en el área de las ciencias básicas. La relación entre la estructura y la dinámica molecular resulta de gran importancia para el desarrollo de nuevas tecnologías basadas en estos materiales poliméricos. Así, una mayor comprensión de cómo pequeños cambios en la estructura química afectan a las propiedades de los materiales resulta esencial para el progreso científico y tecnológico. Un análisis en profundidad de la movilidad molecular permite establecer las relaciones estructura-propiedades. Partiendo de esta base, el principal objetivo del presente trabajo es el estudio de la movilidad molecular de dos familias diferentes de materiales poliméricos. Para ello, las técnicas experimentales utilizadas fueron principalmente la Calorimetría Diferencial de Barrido (DSC) y la Espectroscopia de Relajación Dieléctrica (DRS). La primera familia de polímeros caracterizada fue una serie de copolímeros entrecruzados químicamente compuestos por los monómeros Vinilpirrolidona (VP) y Acrilato de Butilo (BA). En primer lugar, se estudió la influencia de la proporción molar de monómero (XVP/YBA) en las propiedades del copolímero. A través de un análisis por Espectroscopia de Infrarrojo por Transformada de Fourier (FTIR), se verificó la existencia de interacciones dipolo-dipolo entre los grupos amida. Mediante el análisis por DSC, DRS y Análisis Dinamomecánico (DMA), se evidenció la influencia de estas interacciones en diferentes parámetros relacionados con la movilidad molecular. En segundo lugar, se analizó el efecto de la densidad de entrecruzamiento en la dinámica molecular de los copolímeros 60VP/40BA usando DSC y DRS. A través de las medidas de DSC se observó una única transición vítrea para todos los entrecruzamientos. El análisis por DRS mostró como el incremento en entrecruzante produjo el típico efecto en la dinámica del proceso alpha, pero sin embargo, el proceso beta, que tenía las características típicas de una relajación JG, perdió de forma inesperada su carácter intermolecular para el mayor contenido en entrecruzante. El proceso gamma no se vio afectado. La segunda familia de materiales poliméricos estudiada fue una serie de poliuretanos segmentados (PUPH) modificados con diferentes cantidades de grafito expandido (EG), utilizado como relleno conductivo (desde 0 a 50% en peso). El análisis de los resultados obtenidos mediante Microscopía Electrónica de Barrido (SEM), Difracción de Rayos X y FTIR demostró la homogénea dispersión del relleno de EG en la matriz de PUPH. La técnica DRS se usó para estudiar las propiedades dieléctricas de los materiales compuestos PUPH/EG. La permitividad dieléctrica de los materiales mostró una transición de percolación desde aislante a conductor al incrementarse el contenido en EG (rango de 20-30% en peso). La adición de grafito expandido a la matriz de PUPH causó un incremento significativo en la conductividad dieléctrica de diez órdenes de magnitud, lo que indica el comportamiento de percolación. / [CAT] El desenvolupament de nous materials polimèrics de major complexitat produeix un desafiament cada vegada major en l'àrea de les ciències bàsiques. La relació entre l'estructura i la dinàmica molecular resulta de gran importància per al desenrotllament de noves tecnologies basades en aquests materials polimèrics. Així, una major comprensió de com petits canvis en l'estructura química afecten a les propietats dels materials, resulta essencial per al progrés científic i tecnològic. Un anàlisis en profunditat de la mobilitat molecular permet establir les relacions estructura-propietats. Partint d'aquesta base, el principal objectiu del present treball és l'estudi de la mobilitat molecular de dues famílies diferents de materials polimèrics. Per a això, les tècniques experimentals utilitzades van ser principalment la Calorimetria Diferencial de Rastreig (DSC) i l'Espectroscòpia de Relaxació Dielèctrica (DRS). La primera família de polímers caracteritzada va ser una sèrie de copolímers entrecreuats químicament compostos pels monòmers Vinilpirrolidona (VP) i Acrilat de Butilo (BA) . En primer lloc, es va estudiar la influència de la proporció molar de monòmer (XVP/YBA) en les propietats del copolímer. A través d'una anàlisi per Espectroscòpia d'Infraroig per Transformada de Fourier (FTIR), es va verificar l'existència d'interaccions dipol-dipol entre els grups amida. Mitjançant l'anàlisi per DSC, DRS i Anàlisi Dinamomecánico (DMA), es va evidenciar la influència d'aquestes interaccions en diferents paràmetres relacionats amb la mobilitat molecular. En segon lloc, es va analitzar l'efecte de la densitat d'entrecreuament en la dinàmica molecular dels copolímers 60VP/40BA mitjançant DSC i DRS. A través de les mesures de DSC es va observar una única transició vítria per a tots els continguts d'agent entrecreuant . L'anàlisi per DRS va mostrar com l'increment en agent entrecreuant va produir l'efecte esperat en la dinàmica del procés alfa. En canvi, el procés beta, que tenia les característiques típiques d'una relaxació JG, va perdre de forma inesperada el seu caràcter intermolecular per al major contingut en agent entrecreuant. El procés més ràpid gamma no es va veure afectat. La segona família de materials polimèrics estudiada va ser una sèrie de poliuretans segmentats (PUPH) modificats amb diferents quantitats de grafit expandit (EG) , utilitzat com a farcit conductiu (des de 0 a 50% en pes). L'anàlisi dels resultats obtinguts per mitjà de Microscòpia Electrònica de Rastreig (SEM), Difracció de Rajos X i FTIR va mostrar la dispersió homogènia del EG en la matriu de PUPH. La tècnica DRS es va utilitzar per a estudiar les propietats dielèctriques dels materials compostos PUPH/EG. La permitivitat dielèctrica dels materials va mostrar una transició de percolació des d'aïllant a conductor amb l'increment de contingut en EG (20-30% en pes). L'addició d'EG a la matriu de PUPH va causar un increment significatiu en la conductivitat dielèctrica, de deu ordes de magnitud. / Redondo Foj, MB. (2015). A contribution to the study of the molecular mobility in polymeric materials by Thermal and Dielectric Analysis [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/59457 / TESIS

Orientador: Josimeri Hebling / Resumo: Objetivo: Investigar a citotoxicidade transdentinária da acroleína (ACR) sobre células pulpares e a resistência máxima à tração (RMT) da matriz dentinária e resistência da união (RU) resina-dentina após a biomodificação do colágeno dentinário por esse agente promotor de ligações cruzadas. Métodos: Discos de dentina (0,4 mm de espessura) foram obtidos de molares humanos hígidos e adaptados em câmaras pulpares artificiais. Células MDPC-23 foram semeadas na superfície pulpar desses discos e a superfície oclusal foi condicionada com ácido fosfórico por 15s. Sobre a dentina condicionada foi aplicado (n=9): água deionizada (controle), ACR 0,02%, 0,01%, 0,005%, glutaraldeído 5% (GD) ou peróxido de hidrogênio 3%. Após 60s, a superfície foi lavada e as câmaras foram incubadas por 24h. Foi avaliada a viabilidade das MDPC-23 (alamarBlue) aderidas na parede pulpar dos discos e os extratos foram aplicados em novas MDPC-23 e HDPCs (células da polpa dental humana) cultivadas em placas de cultura. Após 24h, essas células foram avaliadas quanto a viabilidade, atividade de fosfatase alcalina (ensaio da timolftaleína), presença de nódulos de mineralização (Alizarin red) e expressão gênica de ALPL, DSPP, MMP2, MMP9 e IL1B (PCRq). Vinte cinco molares adicionais foram seccionados para obter espécimes de dentina (n=50) que foram completamente desmineralizados com ácido fosfórico por 24h. Os espécimes de matriz dentinária foram tratados por 60s com: água, ACR 0,02%, 0,01%, 0,005% ou GD 5% e submetid... (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: Objective: To investigate the transdentinal cytotoxicity of acrolein (ACR) on pulp cells, as well as the ultimate tensile strength (UTS) of the dentin matrix, and the strength of resin-dentin bonds after dentin collagen biomodification with this cross-linker. Methods: Dentin disks (0.4 mm thick) were cut from sound human molars and adapted in artificial pulp chambers. MDPC-23 were seeded on the pulpal side of the disks and the occlusal surface was etched with phosphoric acid for 15s. The etched dentin was treated with (n=9): deionized water (control), 0.02%, 0.01%, 0.005% ACR, 5% glutaraldehyde (GD), or 3% hydrogen peroxide. After 60s, the surface was rinsed, and the chambers were incubated for 24h. The viability of MDPC-23 cells seeded on the disk was assessed (alamarBlue) and the extracts were applied on new MDPC-23 and HDPCs (human dental pulp cells) seeded in culture plates. After 24h, the viability of the cells was investigated as well as the activity of alkaline phosphatase, presence of mineralized nodules (Alizarin red) and ALPL, DSPP, MMP2, MMP9 and IL1b gene expression (qPCR). Additional twenty-five human molars were sectioned to obtain dentin specimens (n=50) which were completely demineralized in 10% phosphoric acid for 24h. The specimens were treated for 60s with: water, 0.02%, 0.01%, 0.005% ACR or 5% GD, and then submitted to a mechanical test to determine the UBS. Finally, flat dentin surfaces prepared in 40 human molars were etched with phosphoric acid and trea... (Complete abstract click electronic access below) / Mestre

Bacterial protein WrbA from E. coli is the founding member of a new family of FMN-dependent NAD(P)H oxidoreductases, forming a functional and structural bridge between bacterial flavodoxin and certain mammalian NAD(P)H:quinone oxidoreductase. For these reasons, protein WrbA is recently intensively studied using various analytical and computing methods. Protein WrbA participates in the protection of cells against oxidative stress, but precise function of the protein WrbA in vivo is still unknown. Protein WrbA forms multimers in solutions. In μM concentrations and at low temperature (4 řC) the protein is in the form of a dimer, with increasing temperature becomes tetrameric. Available three-dimensional crystal structure contains the information about the tetrameric form of the protein, the dimeric form has not been structurally characterized. This thesis was focused on the study of the dynamic behavior of protein WrbA in solution using methods of hydrogen-deuterium exchange and chemical cross-linking followed by mass spectrometric analysis with high resolution (FT-ICR). Behavior of the protein was monitored according to the presence of cofactor FMN. Effect of temperature and protein concentration was also studied. Hydrogen-deuterium exchange provided information about solvent accessibility and...

Transcription factors play crucial regulatory role within the cell and the entire multicellular organism. The important factor is its ability to interact with other regulatory proteins and DNA. Despite the fact that a large part of the interaction network is already documented, detailed information on the structure and dynamics of protein-protein and protein-DNA complexes is still scarce. In this thesis we focused on the possibility of studying conformational changes given by the transcription factor-DNA complex formation using the methods of structural mass spectrometry: hydrogen/deuterium exchange and chemical crosslinking. As a model, we chose a transcription factor FOXO4 which DNA binding domain is structurally well characterized both in free form and in the complex with DNA.

ABSTRACT Mixed function oxygenase system participates in biosynthesis of endogenous and metabolism of exogenous substances (e.g. drugs or chemical procarcinogens) in an organism. Substrates are biotransformed by terminal oxygenases - cytochromes P450 (P450). Catalytic properties of certain P450s (e.g. studied isoform 2B4) are altered in the presence of a redox partner - cytochrome b5 (cyb5). Both cytochromes are anchored by hydrophobic domains in a lipid membrane of endoplasmic reticulum whereas their catalytic domains are exposed to cytosol. Two zero-length cross-linking approaches were employed to extend present knowledge of P450 2B4 and cyb5 protein structure and protein-protein interactions: (1) interlinking of carboxylate and primary amine groups of amino acids by water soluble 1- ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC), and (2) photo-initiated cross-linking by photo-labile methionine analog (pMet), which links to any amino acid after activation by UV-irradiation, either in hydrophilic or hydrophobic environment. pMet was incorporated to methionine site(s) of cyb5 during recombinant expression in E. coli, which was carried out in limit medium supplemented with amino acid analog. Optimization of experimental conditions led to ~20-30% substitution of the natural amino acid. Covalent...

Countless electron transport/transfer (ET) processes occur in living organisms every day. Therefore, their study is a crucial field of modern structural and functional proteomics. In many cases model proteins like azurin from P. aeruginosa are utilised in experiments. This blue copper protein is favoured due to a characteristic absorbance maximum at 630 nm in Cu(II) redox state of the central Cu atom. During its oxidation to Cu(I) state the A630 value decreases allowing UV-Vis detection of ET reaction progress. We have introduced a structural photoinducible analogue of canonical amino acid Met - L-2-amino-5,5-azihexanoic acid (photo-Met) - into azurin structure to study oligomerization in solution via photo-induced cross-linking (PIXL). Using previously optimised protocols for recombinant expression in E. coli B834 we have inserted photo-Met into azurin moieties: wild type azurin and Az2W mutant where two adjacent W residues with confirmed role in electron hopping across protein-protein interface are present. The incorporation percentage of photo-Met in analysed samples was determined after SDS-PAGE and in-gel protease digestion via MALDI-TOF MS. PIXL was employed to study azurin-azurin interaction and oligomerization under different total concentrations of protein (in range of 15-300 µM). The...

Block copolymers are commercially significant and fundamentally interesting class of polymeric materials. The ability to undergo interfacial thermodynamics-controlled microphase separation from a completely disordered state in the melt to a specifically defined ordered structure through self-organization makes the block copolymers based materials unique. Block copolymer are strongly replacing many of the commercially available polymers due to their unique microstructure and properties. The most practical interests of block copolymers lie in the area of thermoplastic elastomers (TPEs). The objective of the present thesis work is to developing novel roots for enhancing the physical and mechanical properties in block copolymer and multigraft copolymers. Initially the properties are tailored by controlling chemical architecture at synthesis level and by selective blending at production level. This gives an easy access for improvement of the material properties and this is one of my major tasks in the present research modules. Further the block copolymer based TPEs are cross-linked in presence of electron beam (EB) radiation for developing materials with superior properties. The electron beam radiation has the ability to alter material parameters at molecular level for enhancing the macroscopic properties. The desirable physical and chemical properties can be easily attained by varying the radiation beam parameters. In addition to that, controlling the material at nanometer scale is one of the greatest challenges for current nanocomposite research. In elastomeric materials it is very prominent to fill the rubber matrix with nano particles from carbon or silica by melt mixing technique for enhancing the material properties. Other than conventional melt mixing technique, sol–gel processing is also a versatile technique, which making it possible to produce a wide variety of materials and to provide existing materials with novel properties. A combination of in situ sol-gel reaction with electron beam cross-linking in TPEs from triblock copolymer has been demonstrated for the first time as one of the novel nanocomposite system in this work. The main advantage of this system lies in controlling the material behaviour by finely tuning the size of silica nano particle generated inside TPE during in situ sol-gel reaction. Finally, the various roots employed for enhancing the material behaviour in block copolymers in the above research module were secussfully employed on super elastic multigraft copolymers for improving their strength withour sacrificing the super elastic nature.

We investigated attachment and migration of human retinal pigment epithelial cells (primary, SV40-transfected and ARPE-19) on nanoscopically defined, two-dimensional matrices composed of parallel-aligned collagen type I fibrils. These matrices were used non-cross-linked (native) or after riboflavin/UV-A cross-linking to study cell attachment and migration by time-lapse video microscopy. Expression of collagen type I and IV, MMP-2 and of the collagen-binding integrin subunit α2 were examined by immunofluorescence and Western blotting. SV40-RPE cells quickly attached to the nanostructured collagen matrices and aligned along the collagen fibrils. However, they disrupted both native and cross-linked collagen matrices within 5 h. Primary RPE cells aligned more slowly without destroying either native or cross-linked substrates. Compared to primary RPE cells, ARPE-19 cells showed reduced alignment but partially disrupted the matrices within 20 h after seeding. Expression of the collagen type I-binding integrin subunit α2 was highest in SV40-RPE cells, lower in primary RPE cells and almost undetectable in ARPE-19 cells. Thus, integrin α2 expression levels directly correlated with the degree of cell alignment in all examined RPE cell types. Specific integrin subunit α2-mediated matrix binding was verified by preincubation with an α2-function-blocking antibody, which impaired cell adhesion and alignment to varying degrees in primary and SV40-RPE cells. Since native matrices supported extended and directed primary RPE cell growth, optimizing the matrix production procedure may in the future yield nanostructured collagen matrices serving as transferable cell sheet carriers. / Dieser Beitrag ist mit Zustimmung des Rechteinhabers aufgrund einer (DFG-geförderten) Allianz- bzw. Nationallizenz frei zugänglich.