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Bioremédiation des rejets de poissons par un polychète détritivore en vue d’un système aquacole intégré multi-trophique / Bioremediation of fish solid wastes by a polychaete detritivore in integrated multi-trophic aquaculture contextLopes Galasso, Helena 29 March 2018 (has links)
Les systèmes intégrés d’aquaculture multi-trophique (IMTA) proposent de limiter les rejets dans l’environnement en associant la culture d’espèces de niveaux trophiques différents et le recyclage des déchets. Les détritivores sont un groupe trophique intéressant car ils permettent l’extraction de matière organique particulaire. Hediste (Nereis) diversicolor est un polychète qui connait un intérêt croissant du fait de sa capacité de bioturbation dans les sédiments et de sa haute valeur commerciale en tant qu’appât et nourriture potentielle pour animaux. L’objectif principal de cette thèse est d’évaluer le potentiel d’ H. diversicolor dans la bio-remédiation des rejets solides en système IMTA. Plus spécifiquement, l’étude a eu pour objectifs : i) de calibrer une nouvelle méthode de mesure des composés organiques des rejets (azote, carbone, phosphore, lipides), ii) d’évaluer l’activité métabolique (respiration) d’H. diversicolor nourries aux fèces de Dicentrarchus labrax en fonction de leur taille et de différentes températures, et iii) d’utiliser un modèle bioénergétique pour simuler croissance, respiration et excrétion d’H. diversicolor selon différents scenarios IMTA.Pour obtenir une caractérisation rapide des composés organiques, une méthode novatrice (NIRS) a été calibrée. Les composés des rejets ont varié entre 44-77% de matière organique, 2-5% d’azote organique total, 11-51% de carbone organique total, 9-26 de rapport carbone/azote, 1-3% phosphore total and 2-12% de lipides (% de matière sèche).Les taux métaboliques de H. diversicolor nourries aux fèces ont été estimés par consommations d’oxygène à différentes températures (11, 17, 22 and 27°C). Les effets de la température et de la taille du ver sur les consommations en oxygène ont été significatifs, mais ces niveaux de respiration (12.3 µmol g-1 de poids sec h-1 à 20°C) correspondaient probablement à un métabolisme basal dû aux conditions expérimentales (jeun et obscurité).Les simulations du modèle DEB H. diversicolor ont été comparées aux données expérimentales de taux de croissance, de respiration et d’excrétion, ce qui a permis de corroborer les prédictions du modèle. Le modèle DEB a permis de tester différents scenarios pour prédire les réponses métaboliques, la croissance, la maturité et la reproduction d’ H. diversicolor à différentes températures (5 à 25°C) et disponibilité alimentaire (f variant de 0.5 à 1, correspondant à la disponibilité des fèces). Le modèle DEB s’est avéré être un outil utile pour prédire les réponses physiologiques sous différentes conditions environnementales dans un contexte IMTA. / Integrated Multi-Trophic Aquaculture (IMTA) systems are based on the concept of limiting aquaculture discharges associating species of different trophic levels to reuse wastes. Deposit-feeders are one trophic group that has gained attention for the extraction of particulate organic matter. Hediste (Nereis) diversicolor is a polychaete species that has gained increasing interest for its bioremediation capacity through bioturbation activity in sediments, and high commercial value as fish bait and animal food sources. The main objective of this thesis was to evaluate the fish waste bioremediation capacity of polychaete H. diversicolor in IMTA context. More specifically, i) to predict organic compounds (nitrogen, carbon, phosphorus, lipids) in marine fish waste, ii) to evaluate the metabolic responses - respiration - of H. diversicolor fed with solid waste of seabass Dicentrarchus labrax at different temperatures and body size, and iii) to use a bioenergetic model (DEB) to simulate growth, oxygen consumption and excretion in different IMTA scenarios.To provide fast characterization of organic compounds we used an innovative method based on near infrared reflectance spectroscopy (NIRS). Chemical content of the waste measured by NIRS models after calibration, ranged from 44-77% organic matter, 2-5% total organic nitrogen, 11-51% total organic carbon, 9-26 carbon/nitrogen ratio, 1-3% total phosphorus and 2-12% lipids (% of dry matter).Fish waste fed H. diversicolor metabolic rates were evaluated through oxygen consumption at different temperatures (11, 17, 22 and 27°C). The effect of temperature and worm body size was significant on oxygen consumptions, however these respiration measures (12.3 µmol g-1 of dry weight h-1 at 20°C) may represent basal metabolic rate due to experimental conditions (starvation, darkness).DEB model of H. diversicolor was compared to experimental data on growth, respiration and excretion rates, which corroborated DEB model predictions. DEB was then applied to test different scenarios predicting metabolic responses, growth, maturity and reproduction of H. diversicolor at different temperatures (5 to 25°C) and food levels (f varying from 0 to 1, corresponding to fish waste loading). DEB revealed to be a useful tool in IMTA context, predicting physiological responses in different environmental conditions.
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Linking individual behaviour and life history: bioenergetic mechanisms, eco-evolutionary outcomes and management implications / Vinculació del comportament individual amb la història de vida: mecanismes bioenergètics, implicacions eco-evolutives i de gestióCampos-Candela, Andrea 08 January 2019 (has links)
Animal behaviour is a state variable of the individual that deserves special attention given its determinant role in eco-evolutionary processes (Wolf et al. 2007 in Nature). The decomposition of the behavioural variation in between- and within-individual variability has revealed the existence of consistent between-individual differences referred to as personality or behavioural types (Dall et al. 2004 in Ecology Letters). Five axes of personality are usually recognized (exploration, aggressiveness, activity, sociability and boldness), and individual specificities along them tend to be correlated leading to what is known as behavioural syndromes. Recently, these patterns of covariation have been enlarged to accommodate movement behaviour within a personality-dependent spatial ecology theory (Spiegel et al. 2017 in Ecology Letters). Most animals tend to forage, reproduce and develop any activity within specific bounded space, which leads to the formation of home range (HR) areas (i.e., HR behaviour, Börger et al. 2008 in Ecology Letters). The increasing development of animal tracking technology is providing a huge amount of movement data revealing that HR behaviour is widespread among taxa and shows a large consistent variability, both at within- and between-individual level, which allows to define the existence of well-contrasted spatial behavioural types (SBTs). SBTs, as other personality traits, play an important role in selective processes as those impelled by harvesting activities. The Pace-of-Life-Syndrome (POLS) theory (Réale et al. 2010 in Philos. Trans. R. Soc. B Biol. Sci), hypothesises on how personality traits are expected to be correlated with life history (LH) traits along the fast-slow continuum (Stearns 1992 in Oxford Univ. Press) in the broadest sense. Accordingly, patterns of covariation between specific SBTs, physiology-related features and LHs would be expected to exist whenever they maximize the animal performance in a given environment. However, the way in which behavioural variation at the within-species level is translated to the wide range of LH traits remains a fundamental yet unresolved question, mainly due to the lack of a proper theoretical framework (Mathot & Frankenhuis, March 2018 in Behavioral Ecology and Sociobiology). Thus, unrevealing the mechanisms behind is certainly scientifically very exciting but also socially relevant. In such a context, this PhD thesis aimed to address from conceptual, empirical and theoretical perspectives cornerstone questions in behavioural ecology: what are the feasible mechanisms underpinning the establishment of HR areas and within-species variation, what are their consequences for animal functioning and performance (i.e., in. LH traits) at the individual and eco-evolutionary levels, or what are the implications for the assessment and conservation of wildlife of the existence of SBTs. The PhD thesis focusses in a fish heavily exploited by recreational fishers but it aims to provide general reasoning applicable to a wide range of wild animals. First, the PhD thesis proposes a mechanistic theory of personality-dependent movement behaviour based on dynamic energy budget models (i.e., a behavioural-bioenergetics theoretical model). Second, integrated in the field of animal personality (i.e., decomposition of behavioural variability into within- and between-individual’s components), it addresses empirically the study of behavioural variability in the main axis of personality for a marine fish species and looked for evidences of whether personality-mediated differences in energy acquisition may exist. Aiming to support empirically the possible connections between personality traits and space-use behaviour, the thesis provides some insights on the application of a novel-tracking algorithm to analyse the movement of individual fish submitted to different experimental conditions. Third, it provides two examples of how applying HR-related theoretical concepts may improve the management of natural resources: attending the properties of HR may facilitate the assessment of wildlife using fixed monitoring sampling stations, and considering SBTs may influence the assessment of the status of wild fish stocks. Finally, the adaptive value of the proposed behavioural-bioenergetics theory is explored by means of dynamic optimization to understand the eco-evolutionary consequences related with HR variability. In summary, this PhD thesis makes an important contribution to behavioural ecology by developing a unifying theory to test the generality and adaptive value of POLS based on dynamic energy budgets. This behavioural-bioenergetics model connects (1) personality traits (2) HR behaviour, (3) physiology and (4) LH traits through an interwoven of mass/energy fluxes, within which they interact and feedback with the ecological context. Overall, from an eco-evolutionary perspective, the proposed framework constitutes a powerful tool for exploring the ecological role of HR behaviour and predicting what combination of behavioural traits would be evolutionally favoured in a given ecological context. Moving forward to including managerial scenarios, this unifying theory provides scientifically founded knowledge that would promote to improve natural resource management by attending the behavioural component of animal populations.
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