Thesis (PhD (Animal Sciences))--University of Stellenbosch, 2005. / Milk production records of all grade and registered Saanen dairy goats from the Milk Recording and Performance Testing Scheme of the Animal Improvement Institute of the Agricultural Research Council of South Africa and pedigree information of these animals from SA Studbook were analyzed to obtain specific genetic parameters. Records of goats with lactations exceeding 60 days in milk were used. A sufficient number of records only became available from 1985 onwards. Reproduction records were determined from milk recording data. The number of milk production records for the British Alpine and Toggenburg breeds was too small to warrant a genetic evaluation. In total, 3190 lactation records of 1413 Saanen does were available for the initial analysis. First and second parity records, 1190 and 775 records, respectively, were subjected to a separate genetic analysis. Milk production records (2319) of one commercial herd providing more than 70% of all the records in the national herd, were also subjected to a separate genetic analysis. The fixed effects identified as having a significant (P<0.05) effect on all traits studied were production year, age of dam, lactation length, parity number, herds (owners) and year of birth. Although some significant interactions were found, they were ignored as their effects were very small. Additive genetic variances and heritability estimates were obtained by ASREML procedures fitting three models. Estimates were generally in accordance with values found in the literature although estimates for fat and protein percentage were lower than expected when compared to dairy cow data. This could be explained by pedigree information lacking in the data set. The h2 estimate for milk yield using all records, first parity records, second parity records and records from a commercial herd were 0.21±0.05, 0.32±0.08, 0.20±0.10 and 0.31±0.06, respectively. Heritability estimates for fat percentage showed a large variation and were 0.19±0.05, 0.67±0.08, 0.34±0.12 and 0.12±0.05, respectively for similar data sets as previously mentioned. In contrast to this protein percentage varied little between data sets and were 0.30±0.06, 0.32±0.00, 0.24±0.11 and 0.28±0.07, respectively. Genetic and phenotypic correlations among production traits were positive and high for all data sets. As for dairy cows, milk fat and protein percentages were negatively related to milk yield. Genetic correlations between milk fat and protein percentages were positive and moderate to high. Increasing milk volume would have a negative effect on fat and protein percentages although it would increase fat and protein yields. Reproduction parameters, i.e. age at first kidding (AFK), age at last kidding (ALK), productive life (PL) and number of lactations (NL) were derived from milk recording data. Mean values for these parameters were 457±171 days, 1046±718 days, 19.3±13.9 months and 2.24±1.37 kiddings, respectively. Kidding interval had no genetic basis and is controlled by management. Heritability estimates were in accordance with literature values and were 0.25±0.04, 0.28±0.04, 0.08±0.04 and 0.05±0.03 for AFK, ALK, PL and NL, respectively. The genetic correlation between AFK and ALK was as expected positive and high, i.e. 0.61±0.10, although the correlation between AFK and PL was negative indicating similar to dairy cows that PL is shortened by a later AFK. The genetic trend for milk, fat and protein yield were positive, although it did not differ from zero. Large variations were observed between years (R2 <0.13). Genetic trends for fat and protein percentages were positive and negative (P<0.05), respectively. These trends are in contrast to trends observed in other countries such as France, The Netherlands and the USA where positive trends were generally observed. This may indicate a higher selection emphasis on milk yield parameters or more complete data sets in terms of pedigree information. The dairy goat industry in South Africa should address some of the problems that were encountered in the analysis of the data. These include factors such as a large number of small herds, many short lactations, a large number of animals lacking production data linked to pedigree information, incomplete pedigrees, few does that have completed three or more lactations, little genetic ties between herds and a small number of progeny for bucks. Some organizational and logistic issues concerning pedigree and milk recording need to be addressed by the South African Milch Goat Society to enable the accurate estimation of the genetic merit of animals in the national herd.

Thesis (PhD(Agric) (Animal Sciences))--University of Stellenbosch, 2006. / This project consisted of five studies. The objectives were to determine the essential amino acid (AA) requirements of growing woolled lambs (Merino and Dohne Merino) and the essential AA profile of duodenal digesta pre-dominantly derived from microbial protein. The limiting essential AA`s in high rumen degradable protein (RDP) diets to growing lambs, where microbial protein is the primary source of AA`s, were also identified. The first study determined the essential AA profile of duodenal protein on a high rumen degradable diet and evaluated the impact of dietary RDP concentration and source [true RDP vs. non-protein nitrogen (NPN)] on the AA composition of supplied in the duodenum. The first trial in this study evaluated the effects of increasing true RDP levels on the essential AA composition of duodenal protein primarily derived from rumen microbes. The lambs had free access to wheat straw and fresh water. The daily RDP supplements were administered in two equal doses into the rumens through rumen cannulas at 07:00 and 19:00. Duodenal digesta was extracted with 6h intervals through T-type cannulas, inserted proximally to the common bile duct. Sampling time was advanced 2h every day to obtain duodenal samples on every even hour of a 24h period after three days. As expected, deficient RDP limited the supply of essential AA`s in the iv duodenum. When the true RDP supplements increased, the duodenal flow of essential AA`s also increased concomitantly, but appeared to level off at the higher RDP levels. Despite the positive quantitative effects of true RDP supplementation on AA supply to the duodenum, the AA profile in the duodenum was unaltered. Consequently, the essential AA profile of duodenal protein of sheep receiving high RDP diets, where microbial protein is the primary source of AA`s in the duodenum, is relatively constant and insensitive to dietary RDP concentration. In the second trial the effects of RDP source (true RDP vs. NPN) on the essential AA profile of duodenal protein on high RDP diets were evaluated by substituting increasing amounts of urea for true RDP in isonitrogenous teatments. Higher NPN increments reduced the daily supply of essential AA`s in the duodenum. In corroboration of the first trial, the AA profile of the duodenal protein was very constant, irrespective of the RDP source. Since microbial protein is the major source of duodenal AA`s on high RDP diets, this study supports the view that microbial protein has a relatively constant AA profile, but microbial protein yield varies according to several rate limiting factors in the rumen. A constant microbial AA profile allows accurate estimates of microbial essential AA supply in the small intestine if microbial protein production and fluid and particulate outflow rates from the rumen can be accurately predicted. This allows the development of more accurate undegradable protein (UDP) supplementation strategies, based on the essential AA requirements of animals. In the second study growing male Merino and Dohne Merino lambs were slaughtered at different weights and body condition scores. The digesta was removed from the stomachs and intestines and every organ or body part were weighed to determine the whole empty body (WEB) composition. The WEB was partitioned into the carcass, internall offal (stomachs, intestines, organs and blood) and external offal (head, feet, skin and wool). No differences were apparent in the proportional weight distribution of similar body components of the same breed at different ages. In a comparison between breeds, the proportional weight contributions of the carcasses from both breeds to the WEB weight were remarkably similar at both slaughtering stages. The Dohne Merino lambs had proportionally larger internal offals and smaller external offals than the Merino lambs at both slaughters. Unless the essential amino acid compositions of the internal and external offals were identical to the carcass, the dissimilarities in weight and protein allocation to these two components within the WEB`s of Merino and Dohne Merino lambs imply a distinct WEB essential AA composition for each breed. The apparent digestibilities of dry matter (DM), crude protein (CP), energy, acid detergent fibre (ADF), neutral detergent fibre (NDF), fat and ash did not differ between Merino and Dohne Merino lambs. Energy retention was also similar for the two breeds, but the Merino lambs retained considerably more N than the Dohne Merino lambs. This may also impact on the respective amino acid requirements of the lambs. Since the Merino lambs utilise N more efficiently, they may have potentially lower essential amino acid requirements to achieve a similar growth rate. The WEB essential AA compositions of growing Merino and Dohne Merino lambs were determined in the third study. Based on the ideal protein concept, the WEB essential AA profile was accepted as representative of the AA requirements for growth. The use of a single body part as a representation of the WEB AA profile was also evaluated. Differences in the proportional weight and protein contribution of the three body components (carcass, internal offal and external offal) of the two breeds strongly suggested that the WEB AA composition of the breeds would differ, because of likely differences in the AA profiles of these components. The essential AA profiles of the carcasses from the two breeds were surprisingly similar. However, the essential AA compositions of the internal offal and external offal differed substantially from each other, as well as from the carcass. In addition, the internal offal and external offals of each breed had characteristic essential AA profiles. Inevitably, the WEB essential AA profiles of Merino and Dohne Merino lambs differed considerably. Only the leucine and phenylalanine concentrations in the WEB`s of Merino and Dohne Merino lambs did not differ. Significant differences in the concentrations of eight essential AA`s implied that the two breeds have different AA requirements for growth. The different AA compositions of the internal and external offal within each breed also illustrated that the use of a single body component, like the carcass, as a predictor of WEB essential AA composition contains considerable inaccuracies. The essential AA index indicated that the duodenal protein, primarily derived from rumen microbes, provided approximately 81 % of the qualitative AA requirements of growing lambs. During periods of sufficient availability of very low-quality forage, as the diet in this study simulated, microbial protein is not able to support maximum growth. The first two limiting AA`s (histidine and methionine) could not even support daily growth rates of 100 g/d. This is very low and stresses the need for effective undegradable AA supplementation under these conditions. Chemical scores identified histidine as the first limiting AA in high RDP diets (predominantly microbial protein), followed by methionine, leucine, arginine and phenylalanine. However, the requirements for histidine and arginine are frequently over estimated and these AA`s should actually be considered semi-essential, which could render methionine, leucine and phenylalanine the first three limiting AA`s to growing lambs receiving high RDP diets. Because of the limitations of static measurement systems for the determination of AA requirements, a more comprehensive evaluation method was introduced for determination of the limiting AA`s in duodenal protein of lambs on high RDP diets, in the fourth study. The fourth study focused on the identification of limiting AA`s to growing lambs being limit-fed a high RDP diet. The diet consisted primarily of soybean hulls, for its’ low rumen UDP content. Microbial protein production was calculated as 13 % of total digestible nutrient intake and complementary AA supplements prepared to simulate the WEB AA profile, determined in the previous study, in the small intestine. To eliminate the influence of the rumen on the AA supplements, the latter were infused into the abomasums via flexible tubing. Each essential AA was in turn removed from the control treatment (simulating the WEB composition) and the effect on N retention measured. When methionine or the branched-chain amino acids (BCAA`s) were removed from the infusate, N retention of the lambs was reduced. Consequently, methionine and at least one of the BCAA`s limited growth performance of young lambs when microbial protein was the predominant source of AA`s. The concomitant increased plasma concentrations of total AA`s when methionine or the BCAA`s were removed from the infusate corroborates the effects on N retention, since it indicates that AA utilisation was reduced when these AA imbalances were introduced. Amino acid imbalances had no effect on apparent DM, organic matter (OM) or NDF digestion, but N digestibility was reduced. The final study verified whether the BCAA’s were co-limiting the growth of lambs, or if any single BCAA was responsible for the limitation. Again the WEB AA profile of growing lambs was simulated in the small intestine via abomasal infusions to lambs receiving a soybean hull-based diet. Leucine, isoleucine and valine were individually or simultaneously removed from the infusate and the impact on N retention measured. On an individual basis valine had the largest negative impact on the efficiency of N utilisation. However, the simultaneous removal of the BCAA`s resulted in the lowest N retention, suggesting that valine might be limiting, but the three BCAA`s are more likely to be co-limiting in diets to growing lambs where microbial protein is the primary source of AA`s. Once again, neither DM, OM or NDF digestibility were affected by the AA imbalances. Nitrogen digestibility was, however, negatively affected by AA imbalances. This project succeeded in establishing the essential AA profile of duodenal protein in sheep receiving high RDP diets. The WEB essential AA compositions of growing lambs from two prominent sheep breeds in South Afica were then determined and the duodenal essential AA profile evaluated against the calculated AA requirements. Finally, the AA`s that limit growth in diets where microbial protein is the predominant source thereof were identified. These results contribute to the current knowledge of AA requirements in growing lambs, and highlight areas for future research, as discussed in the General Conclusion.

Thesis (PhD(Agric))--Stellenbosch University, 2012. / ENGLISH ABSTRACT: The ostrich industry experiences high rates of embryonic mortalities during artificial incubation of eggs. Studies have been carried out to investigate factors influencing hatchability, as well as determining genotypic effects for commercial production. Eggs from the combination of South African Black (SAB) male ostriches crossed with Zimbabwean Blue (ZB) female ostriches had embryonic losses of 45.7%. The embryonic mortality of eggs produced by pure bred SAB or ZB breeding birds subjected to pure breeding was similar at around 33 - 34%, but embryonic mortality was improved in eggs produced by ZB males and SAB female crosses (27%). Female age had a significant effect on the proportion of chicks pipped, as well as on early and late the embryonic mortalities. Chicks from eggs stored for intermediate periods, i.e. 3, 4 and 6 days prior to being set, were more likely to pip than chicks from those eggs set directly after collection without storage. Embryonic mortality was increased in eggs that were set directly (32.0%) or subjected to longer than 6 days of storage (43.5%). Chicks that pipped in the correct position had a higher probability of successfully hatching than those pipping in the incorrect position. Transfer of eggs between setters (i.e. disturbance of eggs) during incubation reduced the number of ostrich chicks pipping in the correct position. Incubated ostrich eggs with intermediate levels of water loss, i.e. between 9.0 and 19% of fresh egg weight, were more likely to pip in the correct position than those with higher or lower levels of water loss. Such eggs were also less likely to sustain early, late or overall embryonic mortalities. To optimise hatching success it is important to understand embryonic development. After 2 days of incubation the blastoderm area in eggs from the SAB x ZB crosses (104.5 mm) was lower (P < 0.05) compared to the pure SAB (141.0 mm), pure ZB (161.7 mm) and ZB x SAB crosses (166.1 mm). For embryos incubated for 7 to 42 days, both embryonic and leg growth during the 42 days of incubation was similar and approximately linear, more or less doubling in size up to 35 days of incubation. The embryo eye size increased more rapidly than beak length and reached full size of approximately 16.2 mm by 28 days of incubation, whereas the beak length continued to increase until the chick hatched at 42 days. Incubation position, vertical or horizontal, did not affect any of the measurements of the developing embryo throughout the 42-day incubation period. Air cell volume at 29 day of incubation for infertile eggs (19.3%) was significantly (P < 0.05) higher when compared to dead-in-shell eggs (14.3%) and eggs that hatched successfully (13.8%). Air cell volume was largely independent of strain (SAB or ZB) and whether chicks were assisted to hatch or not. After 41 days of incubation there was a significantly greater (P < 0.05) air cell volume in eggs that hatched normally compared to dead-in-shell eggs (28.3% vs. 21.7%, respectively, suggesting that insufficient water loss contributed to reduced survival. This study provides an insight into the complexity of embryo development and all the factors playing a role in successful hatching of ostrich eggs. Data from a pair-mated ostrich flock were used to estimate genetic parameters for egg weight (EWT), weight of day-old chicks (CWT), water loss to 21 (WL21) and 35 (WL35) days of incubation, and pipping time (PT). Single-trait estimates of heritability (h2) were high and significant (P < 0.05) at 0.46 for EWT, 0.34 for CWT, 0.34 for WL21, 0.27 for WL35 and 0.16 for pipping time. Genetic correlations with EWT amounted to -0.21 for WL21 and to -0.12 for WL35. Corresponding correlations of CWT with WL were highly significant (P < 0.05) at -0.43 and -0.54. Physical characteristics of the eggshell were found to affect water loss and hatchability. Estimates of genetic parameters of 14 146 ostrich eggs for eggshell traits showed that heritability was 0.42 for pore count (PC), 0.33 for shell thickness (ST) and 0.22 for permeability (PERM). PC was negatively correlated with average pore diameter (-0.58) and ST (-0.23), while PC was positively correlated with total pore area (0.58), WL21 (0.24) and WL35 (0.34). The correlations of PC with total pore area and PERM were high and significant. ST was negatively correlated to WL21 and WL35. Additive genetic parameters strongly indicate that it should be possible to alter evaporative water loss and eggshell quality of ostrich eggs through genetic selection. When assessed as a trait of the individual egg or chick, embryonic mortalities exhibited moderate levels of genetic variation both on the normal scale (h2 = 0.16 - 0.22) and the underlying liability scale (h2 = 0.21 - 0.31). Early embryonic survival and late embryonic survival was governed mostly by the same genes (rg = 0.78). Late embryonic survival was genetically correlated to WL35, at -0.22. It was concluded that embryonic survival could be improved by using husbandry measures, a knowledge of the stage when incubation mortalities occur, and by genetic selection, using an integrated approach. Findings from this study will help to understand the mechanisms involved in hatching from artificial incubation better to improve hatchability and also implement selective breeding programs. / AFRIKAANSE OPSOMMING: Die volstruisbedryf ondervind tans ‘n baie hoë voorkoms van embrionale mortaliteite tydens die kunsmatige uitbroei van eiers. Studies is uitgevoer om die faktore wat uitbroeibaarheid beinvloed te ondersoek en om genotipiese effekte te bepaal vir kommersiële produsente. Eiers van die kombinasie van Suid-Afrikaanse swart (SAB) mannetjie volstruise, met Zimbabwean blou (ZB) wyfies, het embrionale mortaliteite van 45.7% gehad. Embrionale mortaliteite van eiers gelê deur suiwer SAB of ZB volstruise was dieselfde op omtrent 33 - 34%, maar embrionale mortaliteite was laer vir eiers geproduseer deur SAB wyfies wat gekruis was met ZB mannetjies (27%). Wyfie ouderdom het ‘n betekenisvolle effek gehad op die proporsie van kuikens wat gepik het, asook die aantal vroeë- en laat embrionale mortaliteite. Kuikens vanuit eiers wat vir die periode 3, 4 dae en 6 dae voor pak in die broeikaste gestoor is, was meer geneig om te pik as kuikens vanaf eiers wat direk na kolleksie gepak is. Embrionale mortalitiete het verhoog vir eiers wat direk na kolleksie gepak was (32.0%) of vir eiers wat langer as 6 dae gestoor was (43.5%). Kuikens wat in die korrekte posisie pik het ‘n hoër kans op uitbroei gehad as kuikens wat in die verkeerde posisie gepik het. Die skuif van eiers tussen verskillende broeikaste (of enige steurnisse) gedurende die broeiproses het ‘n verlaging in die aantal kuikens wat in die korrekte posisie pik, gehad. Volstruiseiers met ‘n gemiddelde vogverlies van tussen 9.0 en 19% van die vars eier massa, was meer geneig om in die korrekte posisie te pik as eiers met laer of hoër vlakke van vogverlies. Sulke eiers was ook minder geneig tot vroeë, laat en totale embrionale mortaliteite. Vir optimale uitbroeisukses is dit belangrik om die ontwikkeling van die embrio te verstaan. Na 2 dae van broei was die blastoderm area in eiers van SAB x ZB kruisings (104.5 mm) kleiner (P < 0.05) as die blastoderm area van suiwer SAB (141.0 mm), suiwer ZB (161.7 mm) en ZB x SAB kruise (166.1 mm). Beide embrionale- en beengroei tydens die 42 dae broeiproses was dieselfde en nagenoeg lineêr, met ‘n verdubbeling in grootte tot en met 35 dae broei. Die embrio se oog vergroot vinniger as wat die snawel verleng en bereik reeds volle grootte van ongeveer 16.2 mm op 28 dae van broei, terwyl die snawel aanhou groei tot uitbroei van die kuiken op 42 dae. Nie die vertikale of horisontale broeiposisie het enige invloed op die metings van die ontwikkelende embrio tot op 42 dae gehad nie. Lugsakvolume vir geil eiers (19.3%) op 29 dae van broei was groter (P < 0.05) as beide die lugsakke van eiers wat dood-in-dop (14.3%) en eiers wat suksesvol uitgebroei het (13.8%). Die lugsakvolume was onafhanklik van beide genotype en of die kuiken met of sonder hulp uitgebroei het. Na 41 dae broei was lugsakvolume groter (P < 0.05) vir eiers wat uitgebroei het teenoor eiers wat dood-in-dop was (28.3% vs. 21.7%, onderskeidelik), wat impliseer dat onvoldoende vogverlies moontlik kan bydrae tot ‘n verlaging in embrionale oorlewing. Hierdie studie gee ‘n insig in die kompleksiteit van embrionale ontwikkeling en al die faktore wat ‘n rol speel in die suksesvolle uitbroei van volstruiseiers. Tydens die bepaling van genetiese parameters vir spesifieke uitbroei-eienskappe in volstruise, is data gebruik afkomend van ‘n teelkudde in ‘n enkelparing stelsel om genetiese waardes vir eiermassa (EWT), dagoud kuikenmassa (CWT), vogverlies tot 21 dae broei (WL21), vogverlies tot 35 dae broei (WL35) en piktyd (PT) gebruik. Enkeleienskap-beraming vir oorerflikheid (h2) was hoog en betekenisvol teen 0.46 vir EWT, 0.34 vir CWT, 0.34 vir WL21, 0.27 vir WL35 en 0.16 vir piktyd. Genetiese korrelasies met EWT was -0.21 vir WL21 en -0.12 vir WL35. Ooreenkomstig was korrelasies van CWT met WL21 en WL35 hoog (P < 0.05) met -0.43 en -0.54 onderskeidelik. Fisiese eienskappe van die eiers het beide vogverlies en uitbroeibaarheid beinvloed. Beramings van genetiese parameters vir 14 146 volstruiseiers se dopeienskappe het gewys dat oorerflikehid 0.42 was vir die aantal porieë (PC), 0.33 vir dopdikte (ST) en 0.22 vir deurlaatbaarheid (PERM). PC was negatief gekorreleerd met gemiddelde porieë deursnee (-0.58) en ST (-0.23), terwyl PC positief gekorreleerd was met totale porieë area (0.58), WL21 (0.24) en WL35 (0.34). Die korrelasie van PC met totale porieë area en deurlaatbaarheid was hoog en betekenisvol. ST was negatief gekorreleerd met WL21 en WL35. Additiewe genetiese parameters het sterk daarop gedui dat dit moontlik sou wees om vogverlies en eierkwaliteit (bv. dopkwaliteit en poreusiteit) van volstruiseiers te verander deur genetiese seleksie. Indien embrionale mortaliteit geevalueer word as ‘n kenmerk van die eier of kuiken, toon dit matige vlakke van genetiese variasie op beide die normale (h2 = 0.16 - 0.22) en die onderliggende skale (h2 = 0.21 - 0.31). Beide vroeë- en laat embrionale oorlewing word deur dieselfde stel gene beheer (rg = 0.78). Laat embrionale oorlewing was geneties gekorreleerd met WL35 teen -0.22. Die gevolgtrekking was dat embrionale oorlewing verbeter kan word deur verbeterde broeikamerpraktyke, kennis van op watter stadium van ontwikkelings embrionale mortaliteite plaasvind en deur genetiese seleksie. Bevindinge vanuit hierdie studies sal help om die meganismes betrokke by die kunsmatige uitbroei van volstruiskuikens beter te verstaan om sodoende uitbroeibaarheid te verbeter en ook suksesvolle seleksie programme te implementeer.

Thesis (MscAgric (Horticulture))--University of Stellenbosch, 2007. / More and more markets develop around the world for South African grapes and it becomes a challenge to store grapes for longer and reach the market with superior quality. The most destructive decay fungus, Botrytis cinerea can cause huge economic losses and successful postharvest control in the table grape industry relies on SO2. This gas not only controls the fungus but also causes losses due to phytotoxicity. SO2 also creates allergic reactions amongst certain people. In modern times the focus is on food safety and governments consequently impose certain regulations and restrictions to restrict the use of chemicals and ensure “cleaner” produce. The objective of this study was to find a steriliser to reduce B. cinerea inoculum on the berry surface prior to storage,to be used in conjunction with the current method of control – the SO2 generator pad.

Thesis (MscAgric (Horticulture))--University of Stellenbosch, 2009. / ENGLISH ABSTRACT: For many apple (Malus domestica Borkh.) and pear (Pyrus communis L.) cultivars, attractive colour is essential to their profitability on export markets. This study focuses on problems related to poor green colour of ‘Granny Smith’ apples and insufficient red colour of bi-coloured pear cultivars. ‘Granny Smith’ apples often suffer from poor green colour. Green colour of fruit from various orchards was already found to differ midway through fruit development, with these differences being carried through to harvest. In a trial where nitrogen (N) fertilisers were applied using different forms at different times, there was no improvement in green colour. In another trial, artificial shading was applied to fruit only during their early development. Fruit that were shaded during this time were less green at harvest than unshaded fruit. Additional N applications may only improve colour where a deficiency exists. However, green colour may be improved by increasing light distribution early during fruit development. Bi-coloured pears attain their maximum red colour midway through their development, and this desired red colour is mostly lost prior to harvest. Red colour can also increase transiently with the passing of cold fronts. Anthocyanins, responsible for this red colour, may have a photoprotective function which would explain this pigmentation pattern, as photosystems are particularly sensitive to light damage at low temperatures. As ‘Rosemarie’ fruit bent over from a vertical to hanging position during development, peel photoinhibition was reduced as anthocyanins were synthesised. ‘Forelle’ peel was found to be very sensitive to high light levels at low temperatures. Substantial anthocyanin development took place in ‘Cripps’ Pink’ apples when weather conditions were cold, but clear following a cold front. A photoprotective role seems to explain daily changes in anthocyanins in response to temperature, but not the seasonal progression of colour development. For many apple (Malus domestica Borkh.) and pear (Pyrus communis L.) cultivars, attractive colour is essential to their profitability on export markets. This study focuses on problems related to poor green colour of ‘Granny Smith’ apples and insufficient red colour of bi-coloured pear cultivars. ‘Granny Smith’ apples often suffer from poor green colour. Green colour of fruit from various orchards was already found to differ midway through fruit development, with these differences being carried through to harvest. In a trial where nitrogen (N) fertilisers were applied using different forms at different times, there was no improvement in green colour. In another trial, artificial shading was applied to fruit only during their early development. Fruit that were shaded during this time were less green at harvest than unshaded fruit. Additional N applications may only improve colour where a deficiency exists. However, green colour may be improved by increasing light distribution early during fruit development. Bi-coloured pears attain their maximum red colour midway through their development, and this desired red colour is mostly lost prior to harvest. Red colour can also increase transiently with the passing of cold fronts. Anthocyanins, responsible for this red colour, may have a photoprotective function which would explain this pigmentation pattern, as photosystems are particularly sensitive to light damage at low temperatures. As ‘Rosemarie’ fruit bent over from a vertical to hanging position during development, peel photoinhibition was reduced as anthocyanins were synthesised. ‘Forelle’ peel was found to be very sensitive to high light levels at low temperatures. Substantial anthocyanin development took place in ‘Cripps’ Pink’ apples when weather conditions were cold, but clear following a cold front. A photoprotective role seems to explain daily changes in anthocyanins in response to temperature, but not the seasonal progression of colour development. Dwarfing rootstocks are known to improve red colour of bi-coloured pears due to improved light distribution. ‘Forelle’ fruit from six rootstocks of varying vigour were harvested from exposed positions only, so as to establish the effect of rootstock on red colour development independent of the effect of rootstock on canopy light distribution. Fruit from trees on quince (Cydonia oblonga Mill.) rootstocks were found to have redder fruit than those from vigorous BP pear rootstocks. This may be due to higher chlorophyll and carotenoid concentrations present in the peel of fruit from BP rootstocks, whose leaf and peel N were also high. The use of quince rootstocks is recommended where red colour development of bi-coloured pears is a problem. An early season bi-coloured cultivar with good red colour is required. Breeding trials to find such a cultivar are resource intensive. To streamline the process, a method to preselect immature seedlings for their future fruit colour is required. Fruit colour from bearing seedlings was compared with colour of their immature leaves. Trees with red leaves were likely to produce fruit that were too red for the breeders’ requirements. Trees with green or blushed leaves were capable of producing blushed fruit. It would be feasible to cull red-leaved seedlings with minimal risk of losing potential bi-coloured cultivars. / AFRIKAANSE OPSOMMING: Verskeie appel (Malus domestica Borkh.) en peer (Pyrus communis L.) kultivars se winsgewendheid word bepaal deur hul aantreklike kleur. In hierdie studie word die swak groen kleur van ‘Granny Smith’ appels asook rooi kleurontwikkeling van blospere ondersoek. Die groen kleur van ‘Granny Smith’ appels is dikwels onvoldoende. Verskille in groen kleur tussen boorde was reeds gedurende vroeë vrugontwikkeling aanwesig, en hierdie verskille het voortgeduur tot met oes. Groen kleur kon nie deur verskillende bronne en tye van stikstofbemesting verbeter word nie. Stikstofbemesting verbeter groen kleur moontlik net in boorde met ‘n stikstoftekort. Vrugte wat gedurende hul vroeë ontwikkeling oorskadu is, se groen kleur was swakker by oes in vergelyking met vrugte wat nie oorskadu is nie. Groen kleur kan moontlik verbeter word deur ligverspreiding tydens vroeë vrugontwikkeling deur middel van snoei aksies te verhoog. Blospeerkultivars bereik hul maksimum rooi kleur halfpad deur hul ontwikkeling, maar is geneig om hul rooi kleur grootliks voor oes te verloor. Rooi kleur mag egter kortstondig toeneem in reaksie op die lae temperature gepaardgaande met koue fronte. Antosianiene, wat verantwoordelik is vir die rooi kleur, het moontlik ‘n beskermende funksie teen hoë ligvlakke, en hierdie funksie mag moontlik die bogenoemde patroon van rooikleurontwikkeling verklaar. Die natuurlike buiging van ‘Rosemarie’ pere van hul aanvanklike regop oriëntasie tot hul karakteristieke hangende posisie, is gekenmerk deur ‘n afname in fotoinhibisie van die skil en ‘n gelyklopende sintese van antosianien. ‘Forelle’ skil was uiters sensitief vir hoë ligvlakke in kombinasie met lae temperature (16 ºC). ‘Cripps’ Pink’ appels het ‘n vinnig toename in rooi kleur getoon met die koue, maar helder, weerstoestande wat gevolg het op ‘n kouefront. Dit is welbekend dat dwergende onderstamme die rooi kleur van blospere verbeter deur ligverspreiding in die boom te verhoog. Ten einde die effek van onderstam op rooi kleurontwikkeling onafhanklik van die effek van onderstam op ligverspreiding te ondersoek, is ‘Forelle’ pere wat blootgestel was aan vol son geoes van bome geënt op ses onderstamme met verskillende groeikrag. Kweperonderstamme (Cydonia oblonga Mill.) het rooi kleur verbeter in vergelyking met die groeikragtige BP peeronderstamme. ‘n Moontlike rede vir die verbetering is die laer chlorofiel- en karotenoïedkonsentrasies in die skil van vrugte op kweperonderstamme. Bome op peeronderstamme het ook hoër blaaren skil stikstofvlakke gehad. Kweperonderstamme word aanbeveel in gevalle waar rooi kleurontwikkeling van blospere ‘n probleem mag wees. Die RSA vrugtebedryf benodig ‘n vroeë blospeerkultivar met goeie rooi kleurontwikkeling. Die teling van so ‘n kultivar is hulpbronintensief en baie duur. Ten einde die teelproses meer effektief te maak, word ‘n metode benodig om saailinge al voor uitplanting in die boord te selekteer na gelang van hul toekomstige vrugkleur. Die vrugkleur van oesryp pere van draende saailinge is vergelyk met die kleur van hul onvolwasse blare. Bome met rooi blare is geneig om vrugte te dra wat té rooi is om te kwalifiseer as blospere. Die meerderheid blospere is afkomstig van bome met blos of groen onvolwasse blare. Dit is prakties haalbaar om rooiblaarsaailinge uit te dun, met net ‘n klein, aanvaarbare risiko om ‘n moontlike blospeerkultivar in die proses te verloor. / medg2010-1 / Imported from http://etd.sun.ac.za April 2010.

Thesis (MscAgric (Horticulture))--University of Stellenbosch, 2007. / Production of quality fruit is the main aim in horticultural crops. Numerous research reports stress the important role of calcium (Ca) in maintaining firmness and preventing the development of physiological disorders in fruit. This study focused on the effect of water and nutrient management strategies, rootstocks and foliar Ca applications on fruit Ca content. Final Ca content/concentration in apple fruit at harvest did not differ significantly between treatments water with micro jets (hand nutrition), water and nutrients with fertigation, or water and nutrients with pulsating drip when applied to ‘Brookfield Gala’ trees in third leaf, on two rootstocks (M793 and M7). In the second trial, three Ca levels were applied to ‘Brookfield Gala’ trees through a pulsating drip system during three phenological periods to evaluate the effect on Ca uptake of the fruit. During the second season, application of high Ca levels for the period full bloom to harvest gave a higher fruit Ca concentration than with applications of standard or low Ca.

Thesis (MscAgric (Horticulture))--University of Stellenbosch, 2005. / The occurrence of both pre- and postharvest leaf blackening in certain Protea species and cultivars is a problem that severely limits their marketability, vase life and transport options. This research focuses on : (I) The distribution of carbohydrates in inflorescence bearing stems of certain Protea cultivars from harvest, following pulsing with a 10 g.L-1 glucose solution until four weeks postharvest. Stems were held under a variety of postharvest conditions, and (II) The suppression of Protea postharvest leaf blackening with specific focus on the cultivar ‘Sylvia’ (P. eximia x P. susannae).

Thesis (MScAgric (Horticulture))--University of Stellenbosch, 2011. / Includes bibliography. / ENGLISH ABSTRACT: Climatic differences between production areas or seasons directly affect the rate of fruit maturation and the eating quality following storage and ripening. South African ‘Forelle’ pears are harvested at an optimum firmness of 6.4 kg and have mandatory cold storage duration of 12 weeks at -0.5°C to ensure even ripening. The firmness variable alone, however, is not a good indicator of ripening potential. Hence, various maturity variables (ethylene production, ground colour, firmness, total soluble solids (TSS) titratable acidity (TA), and starch breakdown) and their rates of change were evaluated to identify consistent maturity indices that can be reliably used in a prediction model to determine optimum harvest maturity (Chapter 2). This was then related to the ripening potential (Chapter 3) and eating quality (Chapter 4), defined by optimum ‘edible firmness’ (3.5 kg), presence or absence of astringency or mealiness. Fruit were harvested from three main producing areas: Warm Bokkeveld (WBV), Elgin and Koue Bokkeveld (KBV). Harvesting was done biweekly on five harvest dates over three successive seasons (2007-2009). At harvest, 20 of 240 fruit per block were used to determine maturity using all the mentioned parameters in order to understand their changes and behaviour pre-harvest. The remaining 220 fruit were stored at -0.5°C for three storage durations followed by ripening at 15°C. At harvest, the 2007 season’s fruit were more advanced in ground colour and were significantly softer (6.7 kg) than the 2008 (7.0 kg) and 2009 (7.1 kg) seasons. Firmness, ground colour, TSS and TA, all displayed a linear relationship with days after full bloom. For the firmness and ground colour, more than 90% and 73%, respectively, was explained by the variation in the linear model, while for the TSS and TA less than 70% could be accounted for by the model. Fruit harvested before commercial harvest (pre-optimum) in 2007 and 2009 failed to ripen to an ‘edible firmness’ when stored for eight weeks at -0.5oC plus 11 days at 15oC. In 2008, eight weeks storage was sufficient to induce ripening changes in pre-optimum harvested fruit. The development of ripening potential in the 2008 earlier harvested fruit, corresponded with a higher rate of change (3.15 µL.kg-1.h-1.day-1) in ethylene production at 15oC compared to the 2007 (1.98 µL.kg-1.h-1.day-1) and 2009 (1.87 µL.kg-1.h-1.day-1) seasons. The 2007 season fruit experienced maximum incidence of astringency (36.7%) on the first harvested fruit. In all three seasons, fruit harvested at commercial harvest time and later (optimum and post-optimum), required an eight week storage period to induce ripening. However, the eight weeks storage period developed highest mealiness. More than 40% of the last harvested fruit were mealy after eight weeks at -0.5°C plus seven days at 15°C. Mealiness significantly reduced with prolonged storage at -0.5°C. Fruit from the WBV and Elgin, warmer areas than the KBV, were more prone to mealiness. In conclusion, firmness was the most consistent variable at harvest and could be used in conjunction with ground colour to determine ‘Forelle’ harvest maturity. Furthermore, the study does not support shortening the current mandatory 12 weeks period at -0.5°C due to the higher incidence of astringency and mealiness. / AFRIKAANSE OPSOMMING: Klimaats verskille tussen produksie areas of seisoene affekteer die tempo van vrugrypwording en eetkwaliteit na opberging en rypwording direk. Suid-Afrikaanse ‘Forelle’ word ge-oes by ‘n optimum fermheid van 6.4 kg en het ‘n verpligte opbergingstydperk van 12 weke by -0.5°C om egalige rypwording te verseker. Die veranderlike ‘fermheid’ is egter nie ‘n goeie aanduiding van die rypheidspotensiaal op sy eie nie. Dus is verskeie rypheidsparameters (etileen produksie, agtergrond kleur, fermheid, total oplosbare vaste stowwe (TOVS), titreerbare suur (TS) en stysel afbraak) en die tempo van verandering ge-evalueer om konstante rypheidsverwysings te identifiseer wat met vertroue in ‘n voorspellingsmodel gebruik kan word om optimum oes rypheid te kan bepaal (Hoofstuk 2). Dit is dan in verband gebring met die rypwordingspotensiaal (Hoofstuk 3) en eetgehalte (Hoofstuk 4), wat gedefiniëer is deur “eetbare fermheid” (3.5 kg), frankheid en melerigheid. Vrugte is ge-oes uit drie, hoof verbouingsareas: Warm Bokkeveld (WBV), Elgin en Koue Bokkeveld (KBV). By oes is 20 van die 240 vrugte per blok gebruik om die vrug rypheid te bepaal, deur al die bogenoemde parameters te gebruik, om die verandering en reaksie voor oes te begryp. Die oorblywende 220 vrugte is opgeberg by -0.5°C vir drie opbergingstye, gevolg deur rypmaking by 15°C. By oes was die vrugte van die 2007 seisoen verder gevorderd in agtergrond kleur en betekenisvol sagter (6.7 kg) as die van 2008 (7 kg) en 2009 (7.1 kg). Fermheid, agtergrond kleur, TOVS en TS het almal ‘n lineêre verband getoon met dae na volblom. In geval van fermheid en agtergrond kleur, is meer as onderskeidelik 90% en 73% verklaar deur die variasie in die lineêre model, terwyl in geval van die TOVS en TS, minder as 70% deur die model verklaar kon word. Vrugte wat voor die kommersiële oes (pre-optimum) ge-oes is in 2007 en 2009, het nie daarin geslaag om ryp te word tot by ‘eetbare fermheid’ na ag weke by -0.5°C en 11 dae by 15°C nie. Daarteenoor kon vrugte wat pre-optimum ge-oes is in 2008, wel geïnduseer word om ryp te word met ag weke opbeging. Die ontwikkeling van die rypwordingspotensiaal van vrugte wat vroeër ge-oes is, stem ooreen met die hoër tempo van verandering (3.15 µL.kg-1.h-1.dag-1) in etileen produksie by 15°C in vergelyking met seisoene 2007 (1.98 µL.kg-1.h-1.dag-1) en 2009(1.87 µL.kg-1.h-1.dag-1). Die 2007 seisoen vrugte het die maksimum voorkoms van frankheid (36.7%) getoon vir vrugte van die eerste oes datum. In al drie seisoene waar vrugte wat by kommersiële oes of later (optimum en post optimum) ge-oes is, was ‘n ag weke periode van opgeberging voldoende om rypwording te inisiëer, alhoewel die ag weke opberging ook gelei tot die hoogste voorkoms van melerigheid. Meer as 40% van die laat ge-oeste vrugte was melering na ag weke opberging by -0.5°C en sewe dae by 15°C. Melerigheid is betekenisvol verlaag met ‘n verlengde opbergingsperiode by -0.5°C. Vrugte vanaf die WBV en Elgin, warmer areas as die KBV, was meer onderhewig aan melerigheid. Opsommend was fermheid die reëlmatigste veranderlike by oes en kan tesame met agtergrondkleur, gebruik word om vrugrypheid van ‘Forelle’ te bepaal. Verder het die studie nie ‘n verkorting van die huidige, verpligte 12 week opberingsperiode by -0.5°C gesteun nie, weens die hoë voorkoms van frankheid en melerigheid.

Thesis (PhD)--Stellenbosch University, 2014. / ENGLISH ABSTRACT: Bugan, R.D.H. Modelling and regulating hydrosalinity dynamics in the Sandspruit River catchment (Western Cape). PhD dissertation, Stellenbosch University. The presence and impacts of dryland salinity are increasingly become evident in the semi-arid Western Cape. This may have serious consequences for a region which has already been classified as water scarce. This dissertation is a first attempt at providing a methodology for regulating the hydrosalinity dynamics in a catchment affected by dryland salinity, i.e. the Sandspruit catchment, through the use of a distributed hydrological model. It documents the entire hydrological modelling process, i.e. the progression from data collection to model application. A review of previous work has revealed that salinisation is a result of land use change from perennial indigenous deep rooted vegetation to annual shallow rooted cropping systems. This has altered the water and salinity dynamics in the catchment resulting in the mobilisation of stored salts and subsequently the salinisation of land and water resources. The identification of dryland salinity mitigation measures requires thorough knowledge of the water and salinity dynamics of the study area. A detailed water balance and conceptual flow model was calculated and developed for the Sandspruit catchment. The annual streamflow and precipitation ranged between 0.026 mm a-1 - 75.401 mm a-1 and 351 and 655 mm a-1 (averaging at 473 mm a- 1), respectively. Evapotranspiration was found to be the dominant component of the water balance, as it comprises, on average, 94% of precipitation. Streamflow is interpreted to be driven by quickflow, i.e. overland flow and interflow, with minimal contribution from groundwater. Quantification of the catchment scale salinity fluxes indicated the Sandspruit catchment is in a state of salt depletion, i.e. salt output exceeds salt input. The total salt input to and output from the Sandspruit catchment ranged between 2 261 - 3 684 t Catchment-1 and 12 671 t a-1 - 21 409 t a-1, respectively. Knowledge of the spatial distribution of salt storage is essential for identifying target areas to implement mitigation measures. A correlation between the salinity of sediment samples collected during borehole drilling and the groundwater EC (r2 = 0.75) allowed for the point data of salt storage to be interpolated. Interpolated salt storage ranged between 3 t ha-1 and 674 t ha-1, exhibiting generally increasing storage with decreasing ground elevation. The quantified water and salinity fluxes formed the basis for the application of the JAMS/J2000-NaCl hydrological model in the Sandspruit catchment. The model was able to adequately simulate the hydrology of the catchment, exhibiting a daily Nash-Sutcliffe Efficiency of 0.61. The simulated and observed salt outputs exhibited discrepancies at daily scale but were comparable at an annual scale. Recharge control, through the introduction of deep rooted perennial species, has been identified as the dominant measure to mitigate the impacts of dryland salinity. The effect of various land use change scenarios on the catchment hydrosalinity balance was evaluated with the JAMS/J2000-NaCl model. The simulated hydrosalinity balance exhibited sensitivity to land use change, with rooting depth being the main factor, and the spatial distribution of vegetation. Revegetation with Mixed forests, Evergreen forests and Range Brush were most effective in reducing salt leaching, when the “salinity hotspots” were targeted for re-vegetation (Scenario 3). This re-vegetation strategy resulted in an almost 50% reduction in catchment salt output. Overall, the results of the scenario simulations provided evidence for the consideration of re-vegetation strategies as a dryland salinity mitigation measure in the Sandspruit catchment. The importance of a targeted approach was also highlighted, i.e. mitigation measures should be implemented in areas which exhibit a high salt storage. / AFRIKAANSE OPSOMMING: Die teenwoordigheid en impak van droëland versouting word duideliker in die halfdor Wes-Kaap. Dit kan ernstige gevolge inhou vir die streek wat reeds as ‘n waterskaars area geklassifiseer is. Hierdie verhandeling is ‘n poging om ‘n metode vir die regulering van waterversoutingsdinamiek in ‘n opvangsgebied wat deur verbrakking van grond geaffekteer is, i.e. die Sandspruit opvangsgebied, te bepaal deur gebruik te maak van ‘n verspreide hidrologiese model. Dit dokumenteer die volledige hidrologiese modeleringsproses, i.e. vanaf die versameling van data tot die aanwending van die model. ‘n Oorsig van vorige studies bevestig dat versouting ‘n gevolg is van die verandering vanaf meerjarige inheemse plantegroei met diep wortelstelsels tot die verbouing van gewasse met vlak wortelstelsels. Dit het ‘n verandering in die water en versoutingsdinamiek in die opvangsgebied tot gevolg gehad in soverre dat dit die mobilisering van versamelde soute en gevolglike versouting van die grond en waterbronne tot gevolg gehad het. Die identifikasie van maatreëls om droëland versouting te verminder, vereis ‘n deeglike kennis van die water- en versoutingsdinamiek van die studie gebied. ‘n Gedetailleerde waterbalans en konseptuele vloeimodel was bereken vir die Sandspruit opvangsgebied. Die jaarlikse stroomvloei en neerslag varieer tussen 0.026 - 75.401 mm a-1 en 351 - 655 mm a-1 (gemiddeld 473 mm a-1), onderskeidelik. Dit is bevind dat evapotranspirasie die dominante komponent is van die waterbalans, aangesien dit 94% uitmaak van die neerslag. Stroomvloei word aangedryf deur snelvloei, i.e oppervlakvloei en deurvloei met minimale bydrae van grondwater. Die omvang van die opvangsgebied se soutgehalte het aangedui dat die Sandspruit opvangsgebied tans ‘n toestand van soutvermindering ondervind, i.e. sout invloei word oorskrei deur sout uitvloei. Die totale sout in- en uitvloei in die Sandspruit opvangsgebied het gewissel tussen 2 261 - 3 684 t Opvangsgebied-1 en 12 671 - 21 409 t a-1 onderskeidelik. Kennis van die ruimtelike verspreiding van opbou van soute in die grond is belangrik om areas te identifiseer vir die toepassing van voorsorgmaatreëls. ‘n Korrelasie tussen die soutinhoud van sediment monsters wat versamel is tydens die boor van boorgate en die grondwater EC (r2 = 0.75) het die interpolasie van puntdata waar sout aansamel toegelaat. Hierdie interpolasie van sout aansameling het gewissel tussen 3 t ha-1 and 674 t ha-1 en bewys ‘n algemeen verhoogde opbou met vermindering in grond elevasie. Die hoeveelheidsbepaling van water en die versoutings roetering vorm die basis vir die aanwending van die JAMS/J2000-NaCl hidrologiese model in die Sandspruit opvangsgebied. Die model het ‘n geskikte simulasie van die hidrologie van die opvangsgebied geimplimenteer, en het ‘n daaglikse Nash-Sutcliffe Efficiency van 0.61 getoon. Die gesimuleerde en waargenome sout afvoer het teenstrydighede getoon t.o.v daaglike metings maar was verenigbaar op ‘n jaarlikse skaal. Aanvullingsbeheer deur die aanplanting van meerjarige spesies met diep wortelstelsels is geidentifiseer as ‘n oorwegende maatreël om die impak van verbrakking van grond teë te werk. Die effek van verskeie veranderde grondgebuike op die balans van die opvangsgebied se hidro-soutgehalte is geëvalueer met die JAMS/J2000-NaCl model. Die balans van gesimuleerde hidro-saliniteit het ‘n sensitiwiteit t.o.v veranderde grondgebruik getoon, met die diepte van wortelstels as die hoof faktor, asook die ruimtelike verspreiding van plantegroei. Hervestiging van verskeie tipes bome, meerjarige bome en “Range Brush” was die effektiefste t.o.v die vermindering in sout uitloging waar die soutgraad konsentrasie areas ge-oormerk was vir hervestiging van plantegroei (Scenario 3). Die strategie van hervestinging het ‘n afname van 50% in versouting in die opvangsgebied getoon. In die geheel het die resultate van die simulasies genoegsame bewys gelewer dat ‘n strategie van hervestiging en groei as ‘n voorsorg maatreël kan dien om droëland versouting in die Sandspruit opvangsgebied teen te werk. Die belangrikeid daarvan om ‘n geteikende benadering te volg is benadruk, i.e. voorsorg maatreëls kan toegepas word in areas met hoë soutgehalte.

Thesis (MScAgric (Agronomy)--University of Stellenbosch, 2008. / A two year experiment (2004-2005) was conducted at the Tygerhoek Experimental Farm near Riviersonderend in the Western Cape Province of South Africa. The effect of different crop rotation systems on soil properties, disease and insect pests, weed populations, wheat growth, yield and quality in the wheat crop phase, included in these crop rotation systems, was determined. This trial was part of a long term crop rotation experiment started in 2002. This trial was laid out as a block design with four replications. Crop rotation systems included wheat, barley, canola, lupins and pasture phases which consisted of medics and clovers planted collectively. Soil samples were taken at each replication for N-incubations for determination of mineral N (NO3 - -N plus NH4 + -N) at 0-150 mm soil depth. A basic soil chemical analysis was done at 0-150 mm and 150-300 mm soil depths, respectively. Each sub-plot (replication) consisted of a 3 m2 block that was divided into a 1.5 m2 block for harvest and smaller 0.25 m2 blocks for samples that were taken at different growth stages throughout both seasons. Dry mass and nitrogen (N) content of different plant components, leaf area index, disease symptoms and pest damage were recorded from each sample. Trends in basic soil chemical properties mostly differed between crop rotation systems during different seasons while similar trends in soil mineral nitrogen occurred. Highest soil mineral N levels occurred after one or two consecutive years of pasture while levels after a lupin phase were disappointingly low in both seasons. These high soil mineral N levels showed similar trends to wheat grain quality and some wheat yields, while the most influencing factors on wheat grain yield were probably soil physical properties. Soil mineral N after canola was high during plant after which levels were much lower than many other crop rotation systems. This occurrence will probably need a re-evaluation of N fertilizing programs if the same trends are found in similar, but longer trials. Lolium spp. was the most prominent weed that occurred in both seasons at some crop rotation systems seemingly with no direct effect from crop rotation. Highest disease incidence mainly from Septoria spp. and Puccinia spp. occurred, particularly in wheat/wheat rotations, except for Puccinia which showed high ratings of disease symptoms in all crop rotations in the drier 2004 season. Lower ratings occurred in crop rotation systems when wheat was preceded by nonwheat crops. Insect pest damage showed no similar trends indicating no direct effect of crop rotation on these pests and/or effective control from applied pesticides in both seasons. It was concluded that climate was one of the most influencing factors affecting differences and seem to be the main cause for different trends found between these two seasons in similar crop rotation systems. A similar trial with longer duration than this one is thus needed to obtain conclusive trends. This also indicates the importance of integration of crop rotation and management practices that are most optimal during dry and wet seasons, thus limiting risk.