Orientador: Wanderley Dias da Silveira / Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Biologia / Made available in DSpace on 2018-08-23T07:50:57Z (GMT). No. of bitstreams: 1 Silveira_Flavio_M.pdf: 7271586 bytes, checksum: 61c4ca3b97e4b7443d820cd714394fa8 (MD5) Previous issue date: 2013 / Resumo: O resumo poderá ser visualizado no texto completo da tese digital / Abstract: The abstract is available with the full electronic document / Mestrado / Microbiologia / Mestre em Genética e Biologia Molecular

A Escherichia coli é uma bactéria que deve ser controlada na indústria alimentar e setor hospitalar. Biosensores magnetoelásticos oferecem a promessa de rápida identificação destes e de outros patógenos prejudiciais. Neste trabalho, tiras amorfas de Metglas 2826MB3 foram cortadas ao tamanho 5 mm x 1 mm, com uma serra de micro corte e, em seguida, foram revestidas com camadas finas de Au e Cr, como foi verificado pela análise de espessuras de filmes Rutherford Backscattering Spectroscopy (RBS). Foram estudadas várias superfícies dos sensores: 1) sensor as-cast, lado roda; 2) sensor as-cast, superfície livre; 3) superfície polida. Uma camada de cistamina (CYS) foi aplicada ao substrato magnetoelástico, formando monocamadas auto organizadas (SAM), seguido de anticorpos, utilizando um protocolo modificado de Hermanson. Foi utilizado a bactéria Escherichia coli ATCC 25922, um anticorpo primário anti E. coli para a formação do bioconjugado e um anticorpo secundário Goat IgG anti-rabbit H&L Alexa Fluor 488 para a microscopia de fluorescência por método imunológico. O crescimento da camada de cistamina foi caracterizado por espectroscopia de infravermelho com transformada de Fourier (FTIR) e microscopia eletrônica de varredura (MEV) para as superfícies. Os biosensores foram expostos a soluções de bactérias e a frequência de ressonância dos sensores foi medida com um analisador de impedância Agilent E5061B até 100 minutos, em 5 biosensores de cada tipo. As reduções na frequência de ressonância, que apresentam a captura de bactérias, foram medidos após a otimização da amplitude do sinal. Para tempos até 40 minutos, a altas taxas de captação foram observadas e, posteriormente, a saturação ocorreu. Os parâmetros associados com uma cinética de captura foram estudados para diferentes superfícies dos sensores. O sensor com uma superfície polida mostrou melhores resultados. Este trabalho mostra que os biosensores magnetoelásticos podem ser úteis para a detecção e quantificação de microrganismos. / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior. / Escherichia coli is a bacteria that must be controlled in the food industry and the hospital sector. Magnetoelastic biosensors offer the promise of rapid identification of these and other harmful pathogens. In this work, strips of amorphous Metglas 2826MB3 were cut to size (5 mm x 1 mm) with a micro-dicing saw and were then coated with thin layers of Cr and Au, as verified by Rutherford backscattering spectroscopy (RBS). Several sensor surfaces were studied: 1) as-cast strip, wheel side; 2) as-cast strip, free surface; 3) thinned and polished surface. A layer of Cystamine (CYS) was applied to the magnetoelastic substrate, forming a self-assembled monolayer (SAM), followed by antibodies, using a modified Hermanson protocol. For our Escherichia coli ATCC 25922, we used both a primary antibody anti E. coli and a secondary antibody Goat anti Rabbit IgG H&L Alexa Fluor 488. The cystamine layer growth was characterized by Fourier transform infrared spectroscopy (FTIR) and scanning electron microscopy (SEM). The biosensors were exposed to solutions of bacteria and the resonant frequency of the sensors was measured with an Agilent E5061B impedance analyzer for times up to 100 minutes. Reductions in the resonant frequency, corresponding to bacteria capture, were measured after optimizing the signal amplitude. For times up to 40 minutes, high capture rates were observed and thereafter saturation occurred. Parameters associated with capture kinetics were studied for different sensor surfaces. The sensor with a polished surface was found the best results. This work shows that magnetoelastic biosensors may be useful for the detection and quantification of microorganisms.

aEPEC é capaz de causar lesão A/E, provocada por proteínas codificadas na região LEE. Foi realizada a análise estrutural e funcional da região LEE de amostras de aEPEC que expressam os padrões ALL, AA e AD, e amostra não aderente (NA). O padrão de adesão característico e capacidade de causar a lesão A/E foram investigados em células epiteliais. As amostras mantiveram o padrão de adesão independentemente da origem da linhagem celular. A lesão A/E foi detectada em algumas linhagens celulares após o contato com as amostras ALL e AD. A presença da região LEE foi detectada intacta e ensaios de PCR em tempo real, microarray e imunodetecção, mostrando a funcionalidade da mesma em todas as amostras. Um plasmídio que expressa a proteína EspFu foi introduzido em todas as 4 amostras, demonstrando não influenciar nos padrões de adesão e nem na capacidade de causar a lesão A/E nas amostras ALL, AA e AD. Mas, a amostra NA expressou o padrão ALL e foi capaz de causar a lesão A/E. Assim, EspFu desempenhou papel na adesão celular além do estabelecimento da lesão A/E in vitro. / aEPEC is capable to cause A/E lesion, triggered by proteins encoded by LEE region. We analyzed structurally and functionally the LEE region of aEPEC strains displaying LAL, AA, DA, and one nonadherent (NA) strain. The adherence characteristics and ability to cause A/E were investigated in epithelial cells. The displayed adherence patterns were independent of the cell line origin. A/E lesion was detected in some cellular lines after contact only with ALL- and AD-strains. LEE region presence was detected intact and real time PCR, microarray and immunodetection, in all samples tested. An EspFu-expressing plasmid was introduced in all strains, demonstrating no influence of this protein neither in the adherence patterns nor in the capacity to cause A/E of the LAL-, AA- and DA-strains. But, NA-strain expressed the LAL pattern and was able to cause A/E. Therefore, EspFu was shown to play a role in cell adhesion in addition to the establishment of the A/E lesion in vitro.

Escherichia coli Enteropatogênicas são um importante patógeno causador de diarréia. As EPEC podem ser classificadas em típica e atípica, baseado na presença do plasmídeo EAF. As amostras de EPEC apresentam em seu genoma uma ilha de patogenicidade denominada região LEE, na qual estão contidos os genes relacionados a formação da lesão (A/E). A regulação gênica da região LEE é multifatorial, sendo o principal regulador o gene ler. Até o momento não existem trabalhos sobre a participação de Hfq em EPEC, assim sendo, o presente estudo analisa o papel de Hfq na regulação dos fatores de virulência de EPEC típica (O127:H6) e atípica (O55:H7). A mutagênese do gene hfq foi obtida através do sistema l Red de recombinação alélica. As amostras mutantes apresentaram uma diminuição na capacidade aderir e formar a lesão A/E. Analise transcricional dos mutantes revelou uma significativa diminuição na transcrição do gene espA e do gene eae. Foi possível evidenciar uma diminuição da motilidade das amostras mutantes. A analise in silico revelou a possibilidade do dobramento natural do mRNA ler, ocultando o sitio de ligação do ribossomo. Aqui demonstramos a necessidade Hfq para a transcrição dos genes responsáveis pela lesão A/E. responsible for the A/E lesion. / Enteropathogenic Escherichia coli are an important pathogen responsible for causing diarrhea. EPEC can be classified as typical and atypical, based on the presence of the EAF plasmid. EPEC strains have in their genome a pathogenicity island known as LEE region, where it harbours genes related to the formation of a lesion A/E. LEE regulation is multifactorial, being the ler gene its main regulator. Until now there are no studies on the role of Hfq in EPEC, thus, the present study analyzes the function of Hfq on the regulation of virulence factors in typical EPEC (O127:H6) and atypical (O55:H7) strains. Hfq gene mutagenesis was obtained utilizing the allelic recombination l Red system. The mutant strains demonstrated a decrease in the capability of mutant strains to adhere and form A/E lesion. Transcriptional analysis showed a decrease on the espA gene and eae gene transcription. It was possible to notice a decrease in motility of the mutant strains. In silico analysis revealed the possibility of a natural folding of ler mRNA, concealing the ribosome binding site. With this study we could demonstrate the need of Hfq for the transcription of genes responsible for the A/E lesion.

Apesar de Escherichia coli O157:H7 ainda ser considerado o principal sorotipo envolvido com surtos de enfermidades veiculadas por alimentos entre as E. coli produtoras de toxina de Shiga (STEC), outros sorogrupos estão ganhando importância, como O26, O45, O103, O111, O121 e O145, que estão sendo denominados de \"Top Six STEC non O157\". As STEC são responsáveis por sintomas que variam de uma simples diarreia até diarreia sanguinolenta, que pode evoluir ainda para síndrome hemolítica urêmica e púrpura trombótica trombocitopênica, podendo ocasionar danos crônicos como falência renal e levar a óbito. Para tanto, apresentam diversos fatores de virulência, entre eles, as toxinas de Shiga (Stx) ou verotoxinas (Vtx). Os veículos destes micro-organismos são diversos alimentos, sendo o principal deles, as carnes moídas. Apesar da importância da carne moída como veículo transmissor de STEC, pouco se conhece sobre a sua presença nesse alimento comercializado na cidade de São Paulo, SP. Sendo assim, o objetivo deste trabalho foi pesquisar a presença de STEC em carne moída comercializada no varejo da cidade de São Paulo e caracterizar tais isolados quanto à presença dos seguintes fatores de virulência: stx1, stx2, eae e ehx. Foram coletadas 248 amostras em diferentes bairros da cidade de São Paulo. Para a detecção de E. coli sorogrupo O157 foi utilizada a metodologia ISO 16654 e para a detecção dos sorogrupos O103, O111, O145 e O26 foi empregada a metodologia descrita pelo Surveillance Group for Diseases and Infections of Animals (NRM 006). Uma amostra de carne moída (0,4%) apresentou o micro-organismo pesquisado. A identificação genotípica e bioquímica caracterizou esse isolado como STEC O157:H7, portador de todos os fatores de virulência pesquisados: stx1, stx2, eae e ehx. Foi constatada, também, a expressão das proteínas stx em células Vero. Esse é o primeiro relato da presença de E. coli O157:H7 produtora de toxina de Shiga em carne moída no Brasil. / Although Escherichia coli O157:H7 is still considered the most important serotype involved in foodborne disease outbreaks among Shiga toxin-producing E. coli (STEC), other serogroups are receiving more attention such as O26, O45, O103, O111, O121 and O145, that are being called the \"Top Six STEC non O157\". STEC are responsible for symptoms ranging from simple diarrhea to bloody diarrhea, which can further evolve to hemolytic uremic syndrome and thrombotic thrombocytopenic purpura, which may cause damage such as chronic renal failure and lead to death. To do so, they have several virulence factors, including the Shiga toxins (Stx) or verotoxins (Vtx). The vehicles of these microorganisms are many foods, most notably, the ground beef. Despite the importance of ground beef as a vehicle for transmitting STEC, little is known about their presence in this kind of food sold in São Paulo, SP. Therefore, the objective of this study was to investigate the presence of STEC in ground beef sold at retail level in Sao Paulo city and characterize the isolates for the presence of the following virulence factors: stx1, stx2, eae and ehx. 248 samples were collected in different districts of Sao Paulo city. For the detection of E. coli O157 serogroup the methodology ISO 16654 was used and for the detection of serogroups O103, O111, O145 and O26 the methodology described by the Surveillance Group for Diseases and Infections of Animals (NRM 006) was used. One sample of ground beef (0.4%) showed the presence of the microorganism studied. The biochemical and genotypical identification characterized this isolate as STEC O157:H7, carrying all of the investigated virulence factors: stx1, stx2, eae and ehx. The expression of stx proteins in Vero cells was also observed. This is the first report on the isolation of E. coli O157:H7 Shiga toxin-producing from ground beef in Brazil.

The number of food borne illnesses associated with the consumption of fresh fruits and vegetables and their minimally processed products (juices) has increased over the past years. Of particular interest is the ability of microbial pathogens to internalize and survive in fresh produce that are commonly used for juices. This research project addresses the issue of the ability of Escherichia coli O157:H7 to internalize and survive in whole apples before and after harvest. Four cultivars of apples, Redfree, Red Delicious, Golden Delicious, and York, were inoculated under field conditions with a surrogate strain of E. coli, Escherichia coli ATCC 25922. The Redfree cultivar was inoculated at the beginning of its growth stage (day 0), and again 30 days later, and sampled for two weeks, until E. coli was not recoverable through microbiological methods after three successive sampling days. Red Delicious, Golden Delicious, and York cultivars were spray inoculated with the surrogate strain two weeks before their anticipated harvest date and sampled every other day until E. coli was not recoverable for three successive sampling days. For each cultivar, the presence of E. coli ATCC 25922 was not detectable after 7 to 9 days. In the laboratory study the Red Delicious, Golden Delicious, Rome, and York cultivars received one of three treatments; unblemished control, bruising, or puncturing. The apples were inoculated by immersion in cold water containing E. coli O157:H7 GFP, incubated for three days then microbiologically analyzed for presence of the bacteria. In all cases, the punctured apples of each cultivar showed the greatest uptake of E. coli O157:H7 GFP. Escherichia coli O157:H7 GFP was visualized in flesh and core sections of untreated, bruised, and punctured apples of all cultivars. The microbe was found in between cells, but not within cells of the apple. Internalization of Escherichia coli in whole apples on the tree is not likely, and leads to the conclusion that internalization is a post-harvest problem. Internalization may occur before pressing or processing of apples, leading to an increased risk of infection with E. coli for consumers of apple products that are not properly treated to destroy pathogens. Internalization does occur when apples are immersed in solutions containing the pathogen Escherichia coli O157:H7, and better post harvest controls need to be implemented in order to prevent this in whole apples that are used for cider and juice production. / Master of Science

No / Enteroaggregative Escherichia coli (EAEC), increasingly recognized as an important cause of infant and travelers' diarrhoea, exhibits an aggregative, stacked-brick pattern of adherence to epithelial cells. Adherence is mediated by aggregative adherence fimbriae (AAFs), which are encoded on the pAA virulence plasmid. We recently described a highly prevalent pAA plasmid-borne gene, aap, which encodes a protein (nicknamed dispersin) that is secreted to the bacterial cell surface. Dispersin-null mutants display a unique hyper-aggregating phenotype, accompanied by collapse of AAF pili onto the bacterial cell surface. To study the mechanism of this effect, we solved the structure of dispersin from EAEC strain 042 using solution NMR, revealing a stable beta-sandwich with a conserved net positive surface charge of +3 to +4 among 23 dispersin alleles. Experimental data suggest that dispersin binds non-covalently to lipopolysaccharide on the surface of the bacterium. We also show that the AAF organelles contribute positive charge to the bacterial surface, suggesting that dispersin's role in fimbrial function is to overcome electrostatic attraction between AAF and the bacterial surface

No description available.

Call number: LD2668 .T4 1933 B33 / Master of Science

The lexA protein in E. coli is a specific repressor of the recA gene. The lexA protein is cleaved by the recA protein in response to DNA damage. Cleavage derepresses the recA gene resulting in high level synthesis of recA protein and the expression of other DNA damage inducible functions (SOS functions). The lexA3 mutation makes the lexA protein resistant to cleavage and thus inhibits expression of DNA damage inducible functions. A mutant of E. coli has been isolated which exhibits many of the properties expected of a strain carrying an operator-constitutive mutation in the recA gene. The mutation partially suppresses the UV sensitivity of lexA3 strains, maps near the recA structural gene, allows constitutive synthesis of the recA protein and the recA message, and is cis-acting. Strains carrying the recAo('c) mutation were used to study the role of amplified levels of recA protein in the expression of certain SOS functions. The recAo('c) mutation did not suppress the UV inhibitory effect of the lexA3 mutation on the expression of UV induced cellular mutagenesis, and the reactivation and mutagenesis of UV irradiated phage (lamda). The expression of these functions in lexA('+) strains was not enhanced by the recAo('c) mutation. Constitutive recA synthesis did not result in lethal filamentous growth. These results are consistent with those reported elsewhere that the expression of SOS function is not dependent on high levels of recA protein and that the various "SOS genes" are repressed by the lexA protein as is the recA gene. Thus, recA protein is required in SOS expression for the inactivation of lexA protein and recA amplification is a consequence, not a cause of SOS expression. The DNA sequence of the recA operator region from a (lamda)precA transducing phage thought to carry the recAo('c) mutation isolated here, was determined. No difference was detected between the supposed mutant DNA and wild type controls. The significance of these results and the possibility that the recAo('c) mutation was not transferred to the phage are discussed.