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As computer system usage grows in our world, system administrators need better visibility into the workings of computer systems, especially when those systems have problems or go down. Most system components, from hardware, through OS, to application server and application, write log files of some sort, be it system-standardized logs such syslog or application specific logs. These logs very often contain valuable clues to the nature of system problems and outages, but their verbosity can make them difficult to utilize. Statistical data mining methods could help in filtering and classifying log entries, but these tools are often out of the reach of administrators. This research tests the effectiveness of three off-the-shelf Bayesian spam email filters (SpamAssassin, SpamBayes and Bogofilter) for effectiveness as log entry classifiers. A simple scoring system, the Filter Effectiveness Scale (FES), is proposed and used to compare these filters. These filters are tested in three stages: 1) the filters were tested with the SpamAssassin corpus, with various manipulations made to the messages, 2) the filters were tested for their ability to differentiate two types of log entries taken from actual production systems, and 3) the filters were trained on log entries from actual system outages and then tested on effectiveness for finding similar outages via the log files. For stage 1, messages were tested with normalized bodies, normalized headers and with each sentence from each message body as a separate message with a standardized message. The impact of each manipulation is presented. For stages 2 and 3, log entries were tested with digits normalized to zeros, with words chained together to various lengths and one or all levels of word chains used together. The impacts of these manipulations are presented. In each of these stages, it was found that these widely available Bayesian content filters were effective in differentiating log entries. Tables of correct match percentages or score graphs, according to the nature of tests and numbers of entries are presented, are presented, and FES scores are assigned to the filters according to the attributes impacting their effectiveness. This research leads to the suggestion that simple, off-the-shelf Bayesian content filters can be used to assist system administrators and log mining systems in sifting log entries to find entries related to known conditions (for which there are example log entries), and to exclude outages which are not related to specific known entry sets.

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Thesis (MScPhysio (Physiotherapy))--Stellenbosch University, 2008. / Cerebral palsy (CP) is a common neurological condition seen in children which results in childhood disability. Damage to the developing brain results in abnormal muscle tone and decreased force generation, which leads to loss of independent function. Previous studies investigating interventions targeting the typical equinus gait pattern seen in spastic CP have reported inconclusive and widespread outcomes. Objectives The objectives of the study were to determine (1) the effect of functional electrical stimulation (FES) after a single botulinum toxin injection into the triceps surae muscle as a functional orthosis on various gait parameters and economy of movement; (2) caregivers’ perceptions of the impact of the intervention on their child’s function and participation, and (3) optimal timing intervals for introducing FES after a botulinum toxin injection. Method Single-subject research with a multiple baseline approach was conducted on five ambulant subjects (average age 5.1 years, SD=1.4) in the Cape Metropole with a dynamic equinus gait due to hemiplegic CP. Two-dimensional gait analysis, isometric dynamometry, Energy Expenditure Index (EEI), and a caregiver questionnaire were used to gather data on walking speed, ankle angles at initial contact of gait, isometric plantarand dorsiflexior muscle strength, energy expenditure during gait, as well as caregiver perception on participation changes. Statistical analysis was conducted by means of ANOVA tests and graphic data illustrations. Results A statistically significant pre- to post intervention (FES after botulinum toxin) change was found for plantarflexor muscle strength. This effect was partially maintained over the withdrawal phase. Caregivers felt the intervention to have a positive influence on their children’s walking speeds, as well as on age-appropriate function and participation. Selfselected walking speed, dorsiflexor muscle strength, and ankle angles at initial contact did not change significantly. A 32-day interval between between botulinum toxin and the FES programme resulted in the most pronounced improvements in terms of walking speed, EEI scores, and plantarflexor muscle strength. Conclusion FES to the lower limb, 32 days after botulinum toxin into the triceps surae, applied for 30 minutes per day, five times a week over a total of four weeks, seemed to improve selected gait parameters as well as caregiver perception of impact on function and activities of daily living. However, further research is needed.

La blessure médullaire est un traumatisme aux conséquences désastreuses pour le patient. Au-delà de déficiences motrices immédiatement identifiables (paralysie des membres), l’interruption de la communication entre tissu nerveux sous-lésionnel et centres nerveux responsables de l’intégration et de la régulation des processus physiologiques, conduit souvent à un tableau clinique plus complexe. Parmi ces troubles insidieux, l’altération des fonctions urinaires et intestinales est d’une importance majeure. La régulation de ces fonctions étant sous la dépendance des segments les plus caudaux de la moelle épinière, toute altération du tissu spinal engendrera de manière quasi systématique un fonctionnement anarchique des organes conduisant à des dérèglements socialement handicapants (rétention ou/et incontinence urinaire et fécale). Bien que pour corriger cela, une stratégie basée sur la stimulation électrique fonctionnelle au niveau des racines sacrées, ait déjà été implémentée et commercialisée (Implant Brindley-Finetech), son recours ne demeure que trop marginal eu égard aux contreparties exigées (sections des racines afférentes de la moelle sacrée, avec perte de la sensibilité et des réflexes fonctionnels). Il n’est alors pas surprenant d’observer que les patients continuent à leur préférer des alternatives thérapeutiques (cathétérisme, toxine botulique…). L’objectif de cette thèse est d’évaluer les potentialités d’une stimulation directe de la moelle épinière dans la restauration des fonctions urinaires et intestinales chez le sujet lésé médullaire en proposant l’utilisation d’un nouveau modèle expérimental – le cochon domestique (40-60kg, 3-4 mois d’âge) – et une approche chirurgicale. / Spinal cord injury results in the loss of movement and sensory sensations but also in the disruption of some organ functions. Nearly all spinal cord injured subjects lose bladder control and are prone to kidney failure if they do not apply intermittent (self-) catheterization. Electrical stimulation of the sacral spinal roots with an implantable neuroprosthesis is one option besides self-catheterization to become continent and control micturition. However, many persons do not ask for this neuroprosthetic device (Brindley-Finetech implant) since deafferentation and loss of sensory functions and reflexes are serious side effects and since alternative treatments are available to patients (drugs, botulinus toxin….). This PhD work aimed at investigating various techniques for spinal cord electrical stimulation in order to address dysfunctions in spinal cord injured individuals on lesion levels that have an impact on lower limb movements and bladder, bowel and sexual functions. Orderly recruitment of fibers at the spinal cord level should eventually lead to orderly recruitment of the detrusor muscle without activation of the bladder sphincter. Thereby, low pressure voiding, for example, should be obtained that is currently impossible with existing active implantable medical devices. A new large animal model – the domestic pig – was investigated to overcome size effects of rodent models and be able to translate results and technology more easily to human.

SoxR est un régulateur transcriptionnel à centre [2Fe-2S] qui induit une réponse adaptative permettant à E. coli de résister aux composés redox actifs, générateurs de stress superoxyde. En présence de composés redox actifs, le centre [2Fe-2S] de SoxR est oxydé ce qui lui permet d’activer l’expression du gène soxS codant pour un régulateur transcriptionnel activant l’expression d’une centaine de gènes. Parmi les gènes du régulon SoxRS on trouve ceux permettant de résister au superoxyde mais aussi aux antibiotiques. J’ai montré qu’en présence de phénazine méthosulfate (PMS), un composé redox actif, la machinerie de biogénèse des centres Fe-S utilisée pour la maturation de SoxR est différente suivant les conditions environnementales. En effet, en aérobie la maturation de SoxR est assurée par la machinerie SUF, alors qu’en anaérobie c’est la machinerie ISC qui intervient. J’ai également étudié l’importance de SoxR, et des machineries ISC et SUF, dans la résistance aux antibiotiques induite par la présence de PMS. J’ai montré qu’en présence de PMS, E. coli peut résister à la norfloxacine, par un mécanisme SoxR dépendent, et ceci quelque soit la machinerie de biogénèse des centres FeS présente. D’autre part, j’ai étudié l’impact des conditions environnementales, comme la teneur en CO2 dans l’atmosphère sur la capacité d’ E. coli à résister au stress oxydant. J’ai testé, expérimentalement les prédictions obtenues par un modèle d’équations différentielles permettant de simuler la concentration des ROS dans la cellule. J’ai montré que le CO2 a un effet de protection lors d’un stress au H2O2 probablement en capturant les HO• produits par la réaction de Fenton. / SoxR is a [2Fe-2S] cluster-containing transcriptional regulator that mounts the adaptive response allowing E. coli to tolerate superoxide-propagating compounds. When cells are exposed to redox cycling drugs the Fe-S cluster of SoxR undergoes a reversible univalent oxidation to yield the oxidized active protein. The only known target of SoxR is the soxS gene that is itself a transcriptional regulator activating the expression of more than 100 genes including those for superoxide and antibiotic resistance. I showed that the machinery used to mature SoxR under phenazine methosulfate (PMS) exposition, a redox cycling drug, was different depending on the environmental conditions used. In aerobiosis, the SUF machinery ensured SoxR maturation, while in anaerobiosis the ISC machinery was required. I also monitored the implication of SoxR, the ISC and SUF machineries, in antibiotic resistance induced by PMS exposition. I showed that E. coli can resist to norfloxacin under PMS exposition in a SoxR-dependent manner whatever the Fe-S cluster biogenesis machinery available. Last, I studied the impact of environmental conditions, such as atmospheric CO2 concentration, on the ability of E. coli to cope with oxidative stress. I have experimentally tested the predictions obtained by a mathematical model that simulates ROS dynamics. I showed that carbon dioxide has a protective effect on hydrogen peroxide stress likely by scavenging the radical hydroxyl produced by the Fenton reaction.

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