Single frame ultrasound B-mode image quality is largely governed by the ability to focus the ultrasound beam over a range in depths both in transmission and reception. By developing a comprehensive understanding of acoustic wave propagation two signal processing methods were identified for solving the transmission problem. We made use of both the impulse response using the classical point spread function (PSF) and the spatial sensitivity function (SSF) which describes the spatial distribution at a particular time. Using the angular spectrum method, an accurate analytical model was developed for the field distribution arising from a finite geometry, apodized and focused, plane piston transducer. While there is a thorough understanding of the radiated field arising from uniformly excited plane piston transducers, the focused equivalent (i.e., one that allows a continuous change in phase over the plane piston surface) is incomplete and assumes the Fresnel approximation. Our model addresses the effects of diffraction and evanescent waves without the use of the Fresnel approximation and is applicable at all near- and far-field locations in a lossless medium. The model was analyzed to identify new insights into wave propagation and compared with the Fresnel approximation and the spherically-focused, concave transducer. The piston transducer model was then extended to an attenuating and dispersive medium. After analysing existing models of power-law frequency dependent attenuation, a causal, spherical wave Green’s function was derived from the Navier-Stokes equation for a classical viscous medium. Modifications to the angular spectrum method were presented and used to analyze the radiated field of a focused, planar piston transducer. Finally, after presenting our signal processing strategy for improving imaging spatial resolution through minimization of the SSF, two signal processing methods were derived and analysed in simulation: a deconvolution technique to remove the effects of the ultrasound excitation wave and suppress additive noise from the received ultrasound signal, and a retrospective transmit focusing method that changed the response from a predefined transmit focus to an arbitrary transmit focal depth. Proof-of-concept simulations were presented using a variable number of scatterers and compared with the traditional matched filtering and envelope detection technique.

In this thesis a powerful and practical method for characterizing ultrashort pulses in space and time is described (called SEA TADPOLE). First we focus on measuring pulses that are spatially uniform but very complicated in time or frequency. We demonstrate and verify that SEA TADPOLE can measure temporal features as small as 30 femtoseconds over durations as long as 14 picoseconds. The spectral resolution of this device is carefully studied and we demonstrate that for certain pulses, we achieve spectral super resolution. We also develop and test an algorithm for measuring polarization shaped pulses with SEA TADPOLE. Our simple interferometer can even be used to measure the spatiotemporal electric field of ultrashort pulses at a focus. This is because SEA TADPOLE samples the field with an optical fiber which has a small core size. Therefore this fiber can be used to spatially sample the beam, so that the temporal electric field can be measured at every position to obtain E(x, y, z, t). The single mode fiber can be replaced with an NSOM (Near Field Scanning Optical Microscopy) fiber so that spatial resolution as low as 500nm (and possibly lower) can be achieved. Using this device we make the first direct measurements of the compete field of focusing ultrashort pulses. These measurement can be viewed as "snap shots" in flight of the focusing pulse. Also, for the first time, we have observed some of the interesting distortions that have been predicted for focusing ultrashort pulses such as the "forerunner" pulse, radially varying group delay dispersion, and the Bessel-like X-shaped pulse. We have also made the first direct measurements of the electric field of Bessel X-pulses and their propagation invariance is demonstrated. We also use SEA TADPOLE to study the "boundary wave pulses" which are due to diffraction.

Membrane-bound proteins and charged lipids are separated based on their charge-to-size ratio by electrophoretic-electroosmotic focusing (EEF) method on supported lipid bilayers (SLBs). EEF uses opposing electrophoretic and electroosmotic forces to focus and separate proteins and lipids into narrow bands from an initially homogeneous mixture. Membrane-associated species were focused into specific positions within the SLB in a highly repeatable fashion. The steady-state focusing positions of the proteins could be predicted and controlled by tuning experimental conditions, such as buffer pH, ionic strength, electric field and temperature. Careful tuning of the variables should enable one to separate mixtures of membrane proteins with only subtle differences. The EEF technique was found to be an effective way to separate protein mixtures with low initial concentrations and it overcame diffusive peak broadening problem. A "SLB differentiation" post-separation SLB treatment method was also developed by using magnetic particles to rapidly slice the whole SLB into many small patches after electrophoretic separation, while keeping the majority of materials on surface and avoiding the use of chemical reactions. Label-free detection techniques were also developed based on EEF on SLBs. First, a new separation based label-free detection method was developed based on the change of focusing position of fluorescently labeled ligands. This technique is capable of simultaneous detecting multiple protein competitive binding on the same ligand on SLBs. Low concentration protein can be detected in the presence of interfering proteins and high concentration of BSA. The fluorescent ligands were moved to different focusing positions in a charged SLB patch by different binding proteins. Both free ligand and protein bound ligand concentrations were obtained. Therefore, both protein identity and quantity information were obtained simultaneously. Second, the focusing position of fluorescent biomarkers on SLB was used to monitor the phospholipase D catalyzed hydrolysis of phosphatidylcholine (PC) to form phosphatidic acid (PA), which is involved with the change of charge on the phospholipids. The focusing position of fluorescent membrane-bound biomarker in the EEF experiment is directly determined by the negative charge density on SLB. Other enzyme reactions involved with the change of phospholipids charge can be monitored in a label-free fashion in a similar way.

The general aim of this thesis was to investigate affective forecasting in the context of public transport. Paper I, Study 1 revealed that non-users of public transport were less satisfied with the services than users. It was hypothesised that non-users were biased in their satisfaction ratings, a claim that was subsequently investigated in Paper I, Study 2, where a field experiment revealed that car users suffer from an impact bias, due to being more satisfied with the services after a trial period than they predicted they would be. To address the question of whether a focusing illusion is the psychological mechanism responsible for this bias, two experiments containing critical incidents were conducted in Paper II. These experiments investigated whether car users exaggerate the impact that specific incidents have on their future satisfaction with public transport. A negative critical incident generated lower predicted satisfaction with public transport, both for car users with a stated intention to change their current travel mode (in Paper II, Study 1) and for car users with no stated intention to change their travel mode (in Paper II, Study 2), which support the hypothesis that the impact bias in car users’ predictions about future satisfaction with public transport is caused by a focusing illusion. Paper III showed that car users misremember their satisfaction with public transport as a result of their recollections of satisfaction with public transport being lower than their on-line experienced satisfaction. Additionally, the desire to repeat the public transport experience is explained only by remembered satisfaction, not by on-line experienced satisfaction. Paper IV investigated whether a defocusing technique would counteract the focusing illusion by introducing a broader context, thereby generating higher predicted satisfaction. A generic defocusing technique, conducted in Paper IV, Study 1, did not generate higher predicted satisfaction, whereas a self-relevant defocusing technique conducted in Paper IV, Study 2 generated higher predicted satisfaction with public transport. Additionally, it was found that car-use habit accounts for the level of predicted satisfaction regardless of defocusing; the stronger the car-use habit, the lower the predicted satisfaction. The conclusions from this thesis are that non-users of public transport rate the services lower than users do, and that car users become more satisfied when using the services than they predicted. These mispredictions are a result of over-focusing on a limited range of aspects in public transport (i.e., a focusing illusion). Car users’ desire to repeat the public transport experience is influenced by their inaccurate memories of the services and not by their actual experiences. However, defocusing techniques may help car users make more accurate predictions about future satisfaction with public transport; this could facilitate a mode switch from using the car to using public transport services more often. Switching to a more sustainable transport mode could be beneficial for the individual and for society.

This thesis descibes a theoretical study of nonlinear self-focusing as applied to the metrology of the nonlinear optical parameters of a medium. It also studies the phe- nomenon of optical power limiting which utilizes self-focusing e ects. As an analytical tool, a mode decomposition method which uses an orthogonal and complete set of Gaussian-Laguerre modes as a basis set is used to treat these problems. Nonlinear media both in the thin and thick limits are investigated. For thin media, a closed form expression is derived which describes the optical eld of an initally Gaussian beam that is perturbed by a thin nonlinear material which exhibits nonlinear absorption as well as nonlinear refraction. This result is valid for any regime of nonlinearity in the thin medium approximation. Thick media are treated using a numerical extension of the Gaussian-Laguerre Mode Decomposition technique. Spatial scanning techniques such as the Z-scan that rely on self-focusing e ects and that are used to measure the nonlinear optical parameters of a material are studied in detail. Optical limiting in both thick and thin media is also investigated.

This thesis descibes a theoretical study of nonlinear self-focusing as applied to the metrology of the nonlinear optical parameters of a medium. It also studies the phe- nomenon of optical power limiting which utilizes self-focusing e ects. As an analytical tool, a mode decomposition method which uses an orthogonal and complete set of Gaussian-Laguerre modes as a basis set is used to treat these problems. Nonlinear media both in the thin and thick limits are investigated. For thin media, a closed form expression is derived which describes the optical eld of an initally Gaussian beam that is perturbed by a thin nonlinear material which exhibits nonlinear absorption as well as nonlinear refraction. This result is valid for any regime of nonlinearity in the thin medium approximation. Thick media are treated using a numerical extension of the Gaussian-Laguerre Mode Decomposition technique. Spatial scanning techniques such as the Z-scan that rely on self-focusing e ects and that are used to measure the nonlinear optical parameters of a material are studied in detail. Optical limiting in both thick and thin media is also investigated.

Thesis (PhD)--Macquarie University, Division of Environmental & Life Sciences, Dept. of Chemistry & Biomolecular Sciences, 2009. / Bibliography: p. 200-212.

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This thesis is focused on the study of restrictive focusing adverbs in the Czech and Spanish languages. The thesis is divided into a theoretical and a practical part. The theoretical part describes the exclusion focusing adverbs in both languages using secondary literature. The practical part uses the parallel corpus to examine what lexical equivalents correspond to individual Czech focusing adverbs, and shows their individual semantic or positional differences in detail.

The work in the dissertation expands the applications of DIEF and describes the development of incorporating DIEF in a microfluidic chip to create a comprehensive proteomics tool. Proof-of-concept DIEF experiments have been done previously, so the focus of this work is to explore the capabilities of DIEF. Dynamic isoelectric focusing (DIEF) is a separation technique invented by Dr. Luke Tolley. It is similar to capillary isoelectric focusing except it uses four high voltage electrodes to form a pH gradient instead of only two. The additional two electrodes are able to manipulate the pH gradient resulting in selection of the region and of the range of pH within a pre-defined sampling or extraction point. One of the first applications described for DIEF was to isolate a single protein from a complex mixture. The protein isolated was a cellulase enzyme capable of degrading multiple cellulose materials over a wide range of environmental conditions. DIEF did isolate the protein in a pH span of 0.005 which is equivalent to 0.075% of the total pH range. Fractions were collected for sequencing analysis, but the fractions were contaminated with keratin both times. DIEF was also successfully performed in an open air channel. Though other electromigration techniques have been successfully done in open air channels, these techniques were severely time and pH limited. In contrast, DIEF in an open air channel is capable of using the entire 3-10 pH range and can perform isolations until the proteins are completely separated. The device developed was also an improvement on increasing sample capacity. The channel was significantly bigger than the traditional glass capillaries used. Since the channel was open, fraction collection was made simpler by collecting using a pipette. This work also demonstrated that DIEF can be made through the use of silicone molding compounds and polyurethane. The amount of milling needed is reduced, the pieces are produced quickly, and a single mold can produce several pieces. Machining pieces with fragile bits is not needed to be done as much since only one acrylic piece is required produce a mold. The mold can produce several polyurethane pieces. This fabrication method has proven useful for making DIEF holders. The next step was to make DIEF a truly comprehensive proteomic tool by incorporating it into a microfluidic chip. Multiple sample fractions are rapidly generated on chip through the use of multiple bubbles simultaneously injected into the separation channel. This stops the separation and, since each droplet is isolated from others by a bubble on each side, the protein peaks are not able to broaden. This novel use of digital microfluidics is still a work in progress, but the fundamentals have been demonstrated. The fabrication protocol for making molds and PDMS casts was developed using materials and procedures that can be done in a common laboratory environment. DIEF is a separation technique still in its infancy, with a wide variety of available applications. DIEF will continue to be tested in other areas and developed into a comprehensive proteomic tool.