PhD / An important component of fish health is an optimally functioning reproductive system. The Luvuvhu River Catchment in the Limpopo Province, South Africa, is a tropical, high-risk malaria area where 1,1,1-trichloro-2,2-bis(p-chlorophenyl)ethane (DDT), an endocrine disrupting chemical (EDC), has been used annually since 1945 as a malaria vector control. DDT is known to affect testes morphology and motility of fish sperm. As such, testicular histology and sperm motility (kinematic) parameters were studied as reproductive indicators of the reproductive capacity for two wild, indigenous fish species (Oreochromis mossambicus and Clarias gariepinus) from the currently DDT sprayed area. Three field studies were carried out over two years (2007 – 2008), including two high flow (HF) periods and one low flow (LF) period [HF 1 (March 07), LF (October 07), HF 2 (February 08)]. Both species were sampled from three sites on the Luvuvhu River for testicular histology and computer assisted sperm analysis (CASA), during all three field studies. The sites included a reference site outside the DDT sprayed area, Albasini Dam (AD), and two exposed sites within the DDT sprayed area, Xikundu Weir (XW) and Nandoni Dam (ND). CASA, based on open-source software, was used for the first time in South Africa to assess sperm kinematic parameters of indigenous fish species in field conditions. These included percent motile sperm (% MOT), curvilinear velocity (VCL μm s-1), velocity of an average path (VAP μm s-1), straight line velocity (VSL μm s-1), linearity (LIN %), progression (PROG μm), and average efficiency (AVE. EFF.). Water and sediment samples were collected during all field studies from the three sites for metal and EDC analysis. Controlled laboratory studies were also carried out on the sperm of both species, externally sourced from aquaculture farms equipped to breed and raise fish in toxicant free water. The laboratory studies involved in vitro exposure of spermatozoa to two different, but environmentally relevant, concentrations of both DDT (DDT 1: 0.27 μg L-1; DDT 2: 0.5 μg L-1) and 1,1-dihloro-2,2-bis(p-chlorophenyl)ethylene (DDE) (DDE 1: 0.11 μg L-1; DDE 2: 1.0 μg L-1) with the aim to provide data to support the possible outcomes found in the field studies using CASA. Furthermore, peroxidation of sperm lipids was assayed by production of malondialdehyde (MDA) after in vitro exposure of spermatozoa to DDT and DDE. DDT and its metabolites were found in varying concentrations in the water from all three sites (0.1 μg L-1 – 1.2 μg L-1). Levels of dieldrin (3.5 μg L-1) and lindane (9.4 μg L-1) residues were also found at XW in HF 2. The histological results revealed alterations to testis tissue of both species at all three sites. The testes were assessed through the identification of alterations and an organ index was calculated: Testes Index (IT). The index is indicative of the histological response in the respective tissue type. O. mossambicus at XW had the highest mean IT value during LF (7.45 ± 5.73) and for all field studies combined (5.47 ± 4.63), primarily due to the occurrence of testicular oocytes (intersex), where the frequency of prevalence was 72.73% and 58.82% respectively. These results were statistically higher than the laboratory control (C) group. The CASA results showed statistical differences primarily for O. mossambicus, where motility parameters were lower at XW when compared to AD. Laboratory exposures found a decrease in sperm motility (% MOT) between the control (C) group and the DDT 1, DDE 1 and DDE 2 exposed groups for C. gariepinus. No significant differences were seen for lipid peroxidation (MDA). On the other hand, no significant differences were seen in CASA parameters between the control and exposed laboratory groups for O. mossambicus, but there was an increase in MDA production from the control to the DDT 1 exposure group.

M.Sc. Aquatic Health) / The Klip River runs past heavy urbanization and industrialization as a consequence it is possibly one of the most abused river systems in Gauteng and perhaps the country as a whole. Eight sites were selected along the course of the Klip River for biomonitoring purposes. The sites were selected to represent the upper, middle and lower reaches of the river, while sites representing point source pollution sources were also included. Various biomonitoring techniques have been included to determine the present ecological state of the Klip River. This includes biotic indices to assess the ecological integrity of the fish and invertebrate communities and the habitat. In addition, fish health was assessed using a variety of histological, biomarker and bioaccumulation based assessments. From the results it is evident that the sites on the Klip River represent the three main regions of a river including headwaters, middle reaches and a mature river. These natural changes in river ecology also caused natural variations in the habitat availability and the resultant biotic communities. There were, however, many changes not related to these natural variations but rather the numerous anthropogenic activities present on the river. The most noticeable change has occurred due to alteration in the flow regime. These changes are brought about by the many weirs and bridges in the system, return flow from the numerous settlements and agricultural activities and the various WWTW. These alterations in flow have caused serious erosion of the stream banks and may lead to siltation of the system. It is clear from the results of the sediment particle size analysis that there is an increase in the percentage contribution of medium and very fine sand below site 3. This is a good indication that the increased flow below the Olifantsvlei WWTW is already causing siltation. Ultimately this can lead to loss of riffle habitat within the river. These flow alterations have also caused an alteration to habitat availability and quality and as a result caused a modified invertebrate community. The macroinvertebrate community at all the sites (below site 1) consisted of taxa that are tolerant to pollution. This is also reflected in the poor SASS 5 and ASPT scores observed at the various sites. These tolerant organisms probably occur in the system due to an altered habitat template and a change in water quality. It is important to note that although the values obtained for the water quality variables are within the TWQR that the oxygen saturation at some sites decreased. These sites included the sites below the Olifantsvlei WWTW, after the confluence with the Rietspruit and the last monitoring site. The Fish Health Assessment Index scores were the highest at site 3 and decreased to site 8. This indicated that the fish condition improved from site 3 to site 8. However, there was a large variation in the index scores from the individual specimens. The results of this assessment cannot be compared to other studies as no fish health assessment index has been applied on the Klip River. This study will serve as a baseline assessment for future studies of the fish health of the Klip River. The results of the metal analysis in the fish muscle tissue indicated relatively low levels that correspond to levels measured by Kotze (1999) while still being lower than fish sampled from the polluted Olifants River. It is therefore recommended that further studies be completed on the fish health of the Klip River and that the fish health of specimens in the Klip River is compared to those of the Vaal River to determine the impact of the Klip River system on the Vaal River. As it has become clear that the Rietspruit also influences the water quality of the Klip River it is recommended that further studies be completed on the Rietspruit to determine the cause of the impacts. Because the histological alterations identified may be the result of a range of different biological and/or chemical stressors, it is difficult to assign specific causative agents for the various alterations identified. Based on the selected parameters investigated, the results show that fish in the Klip River appears to be in a relatively healthy condition and the organs seem to be in a functional state. Establishing a histology-based monitoring programme for fish health in the Klip River, by incorporating appropriate sample sizes and various fish species is recommended. Monitoring of biological responses for assessing the significance of pollutants has become a reasonable measurement in biomonitoring, and use of biomarker responses has played a significant role in this aspect. However, no biomarker has been validated as a unique tool to determine the effects of pollutants on organisms. Furthermore, it is necessary to understand how bioaccumulation and biomarkers relate to each other on exposure to specific pollutants and how it varies between species, to interpret the effects of pollutant exposure in both the field and laboratory. The results obtained in this study indicate that there are definite impacts on the entire system, although these have not altered fish biology and functionality to a large extent. However, sample size should be considered when evaluating individual biomarker responses, as a larger sample size will be more representative of the resident fish community’s response to the pollutants and other stressors. It is difficult to assign specific stressors for the various biomarker responses identified. It is recommended that further biomarker studies be undertaken on the Klip River to increase the level of confidence in the results obtained.

Mean salinity concentrations in the four reservoirs (Moss, Ray Hubbard, Texoma and Possum Kingdom) ranged from 0.2 ppt in Moss Lake to 2.01 ppt in Possum Kingdom Lake. Reservoir sodium and chloride concentrations were hypotonic to hypertonic to plasma levels in all species. Interspecific differences were seen in ionic concentrations within each reservoir. Total osmotic and sodium concentrations in carp, Cyprinus carpio, were correlated to their concentrations in the reservoirs. No such relationship was noted for chloride, potassium and calcium. A laboratory study indicated that fish collection by electroshock did not bias plasma ion concentrations. Exposures to wide variations in ionic concentrations did not appear to induce stress in the species studied.

Ph.D. (Zoology) / The study concept was derived following an information requirement related to the need for the development of a scientifically sound technique to minimize illegal entries at major South African freshwater fishing tournaments. The hypothesis was that fish that are in equilibrium with the environment that they live in should reflect the chemistry of that environment. Therefore it would be possible to chemically link the fish to a specific impoundment and identify whether the fish are indeed from that impoundment or whether they were brought there to be illegally entered at a fishing tournament. The project area consisted of selected lakes within the Vaal, Mgeni, Crocodile (West) and Olifants River catchments in South Africa. The catchments were chosen to contain major sport fishing lakes and to have different sizes, different sources of pollution, different underlying geological compositions and different climates. Soil analyses data from the regional geochemical mapping program of the Council for Geoscience as well as lake sediment and lake water analyses were used to trace chemical elements during weathering, erosion and deposition. This was done to identify unique characteristics that are able to distinguish between water and sediment from individual lakes. It was found that Rb, Sr, Ba, Cu, Ni,Th, Pb, Sc, K, Mg and Ca could be effectively used as single elements or element ratios to distinguish between lakes. Large variation in sediment compositions within individual lakes limited this distinction. Anomalous catchment soil concentrations related to the underlying geology or anthropogenic contamination can however be traced to lake sediments. Rare earth elements are not uniformly distributed in lake sediments or lake waters and sampling localities should be carefully considered when comparing lakes. Leachable soil sulphate distribution patterns from coal mining areas above Lake Witbank and Lake Middelburg extend downstream through Lake Loskop to Lake Arabie (Flag Boshielo). Leachable fluoride, abundant in the Pilanesberg Alkaline Complex extends northwards along rivers draining the complex. The mineralogy of lake sediments was also compared with the major element composition of these sediments as well as with the anion composition of lake water. Genetic rock classification diagrams could be used effectively to show correlations between catchment soil and lake sediment samples both in terms of mineralogy and chemistry. Lake water and fish tissue samples were collected and analysed to investigate the link between element concentrations in lake water and otolith, fin spine, muscle, liver and gill tissues. Using the Sr/Ca elemental ratio, a species-specific correlation was identified between lake water, otolith, spine and gill tissue samples. The best discrimination between fish species was achieved using a Na/Ca versus Mg/Ca elemental ratio diagram of gill tissues. The best discrimination between fish from different lakes was achieved using a Ba/Mg versus Sr/Mg elemental ratio diagram for spine tissue. Sediments from most lakes in the project area showed elevated Hg values during the dry season as well as elevated Hg levels in sediments from the deeper/central part of these lakes. Lake Sterkfontein has a low sediment Hg concentration but contains fish with the highest Hg tissue concentration in the project area. When comparing the Hg distribution in fish muscle and spine tissue from the project area there is a better correlation with species than with location. The Sr isotope ratio of lake water shows a remarkable correlation with the Sr isotope ratio of fish from the same lake. Analytical data showed that fish within a specific lake all have the same Sr isotope ratio in their spines regardless of species, age, sex and condition. The Sr isotope ratio of water generally increases with distance from the source within tertiary catchments and is determined by the prevalent geology of the formations being weathered. In large rivers like the Vaal River where pollution also plays a role the pattern is much more complicated. The Pb isotopic composition of soil samples from Pretoria and the surrounding areas correspond well to the major underlying geological units. Superimposed on this pattern is an anomalous anthropogenic Pb component possibly related to leaded fuel, which extends from the Pretoria city center northwards along the road and railway networks. Water and sediments from Lake Bon Accord and Lake Marais also contain this anthropogenic signature. The hypothesis that fish, which are in equilibrium with the environment that they live in, should reflect the chemistry of that environment, is therefore not rejected since the results of analysing lake water and fish tissues from 23 South African lakes, within 4 major catchments showed definite correlations. Comparing single elements is the least effective method of establishing such correlations. Comparing elemental ratios is a much better method, while comparing isotope ratios is the most effective method.

A ordem Characiformes compreende cerca de 1700 espécies formalmente descritas que habitam a região Neotropical e com três famílias exclusivas da região da Etiópica subsaariana. Possui formas herbívoras, carnívoras e detritívoras, sendo uma ordem com hábitos ecológicos diversos. A classificação formal das famílias da ordem é baseada quase que estritamente em caracteres osteológicos e poucos caracteres de outras naturezas são utilizados para estabelecer hipóteses filogenéticas no grupo. Dessa maneira, o estudo do complexo morfológico encefálico preencheu essa lacuna representada pela ausência de novos caracteres de outra natureza morfológica que contribuam para o melhor entendimento das relações de parentesco entre os Characiformes. O presente estudo teve como objetivos principais a descrição e ilustração da macro morfologia encefálica de representantes das famílias de Characiformes e o levantamento de caracteres filogeneticamente informativos relacionados a esse complexo morfológico. Foram examinados 52 táxons terminais e 42 caracteres encefálicos. Adicionalmente a matriz de dados encefálicos, foram incoporados 126 caracteres osteológicos que definem os principais agrupamentos de Characiformes. O comportamento dos caracteres encefálicos foi mapeado através de uma análise de parcimônia, dessa maneira auxiliando a sustentar vários arranjos filogenéticos. Alguns arranjos filogenéticos novos foram obtidos, tais como, a relação de grupo-irmão entre Hemiodontidae + Chalceidae; Cynodontidae + Acestrorhynchidae como clado-irmão de Erythrinoidea; Gasteropelecidae + Triportheidae + Bryconidae sendo mais relacionados entre si; Crenuchidae como grupo-irmão de Characidae. Além dessas relações, corroborramos a elevação de algumas subfamílias de Characidae para o status de família, como Acestrorhynchidae, Bryconidae, Cynodontidae, Iguanodectidae e Triportheidae. A família Characidae tendo Heterocharacinae como ramo basal e sustentada principalmente por caracteres osteológicos tendo adicionalmente, um caráter exclusivo encefálico. Aphyoditeinae + Aphyocharacinae + Cheirodontinae mais relacionados e a subfamília Characinae como um grupo monofilético. / Characiformes comprises about 1.700 formally described species inhabiting the Neotropical region and three exclusives families of sub-Saharan Etiopic. The species of the order have herbivorous, carnivorous and detritivores feeding habits, being an order of several ecological habits. The formal classification of the families of the order is based almost exclusively on osteological characters and very few of characters of other types are used to establish phylogenetic hypotheses in the group. Thus, the present study of brain morphological complex aims to fill this gap represented by the absence of new morphological characters of another nature that might contribute to a better understanding of the relationships among the Characiformes. Thus, the present study had as main objectives the description and illustration of external brain morphology of representatives of all the families of Characiformes and the searching for phylogenetically informative encephalic morphological characters. For this, 52 terminal taxa and 42 brain characters were examined, in addition of brain data set, have been examined 126 osteological characters that define the main groups of Characiformes. The behavior of brain characters was mapped through a parsimony analysis, thus helping to sustain several phylogenetic arrangements of Characiformes. Some new phylogenetic arrangements were obtained, such as: the sister-group relationship between Hemiodontidae + Chalceidae; Cynodontidae + Acestrorhynchidae as clade-sisters of Erythrinoidea; Gasteropelecidae + Triportheidae + Bryconidae forming a monophyletic group; Crenuchidae as sister group of Characidae. In addition to these relationships, we corroboratethe elevation of some subfamilies of Characidae to family status, such as Acestrorhynchidae, Bryconidae, Cynodontidae, Iguanodectidae and Triportheidae. The Characidae family having Heterocharacinae as the most basal clade and sustained mainly by osteological characters, plus an exclusive character of brain nature. Aphyoditeinae + Aphyocharacinae related to Cheirodontinae and, Characinae subfamily as a monophyletic group.

A tribo Glandulocaudini inclui os gêneros Lophiobrycon, Glandulocauda e Mimagoniates e dez espécies, distribuídas em ambientes de água doce do leste e sul do Brasil, no Paraguai e nordeste do Uruguai. São peixes neotropicais de pequeno porte, cujo grau de especialização morfológica e comportamental, bem como os padrões de distribuição das espécies, constituem interessante modelo para estudos evolutivos e para o entendimento de padrões biogeográficos de peixes de água doce na América do Sul. Embora os trabalhos sobre sistemática e biogeografia realizados recentemente representem avanço considerável no conhecimento de Glandulocaudini, nenhum foi embasado fundamentalmente em evidências moleculares. Além disso, amostragens recentes revelaram aspectos inéditos relativos à distribuição de populações alopátricas das espécies Glandulocauda melanopleura e Mimagoniates microlepis e estes novos dados indicaram a necessidade de estudos mais aprofundados em nível populacional, envolvendo a análise combinada de dados moleculares e morfológicos. A presente tese aborda estas questões, e para isto está dividida em três capítulos. No primeiro capítulo foi realizada uma análise filogenética com base em sequências gênicas do mtDNA e nuDNA para a tribo Glandulocaudini, que representa a primeira hipótese de relações proposta com base em dados moleculares para o grupo. No segundo e o terceiro capítulos foram realizadas análises filogenéticas, filogeográficas, de demografia histórica, e análises morfológicas das populações alopátricas de Mimagoniates microlepis e Glandulocauda melanopleura, respectivamente. / The tribe Glandulocaudini comprises three genera, Lophiobrycon, Glandulocauda and Mimagoniates, and ten species, distributed in freshwater environments of eastern and southern Brazil, Paraguay, and northeastern Uruguay. Its members include small Neotropical fishes, whose degree of morphological and behavioral specialization, as well as the distributional patterns of the species are of great value for evolutionary studies and understanding of biogeographical patterns of South American freshwater fishes. Although studies on systematics and biogeography carried out recently represent considerable progress on the knowledge of Glandulocaudini, none was grounded in molecular evidence. Furthermore, recent samples revealed unknown aspects concerning the allopatric distributions of populations of Glandulocauda melanopleura and Mimagoniates microlepis, and this new data indicates the need of more deep studies at population levels, combining both molecular and morphological analysis. This thesis addresses such issues and for this purpose it is divided in three chapters. In the first chapter, a phylogenetic analysis of the tribe Glandulocaudini, based on mtDNA and nuDNA data was performed, representing the first hypothesis of relationship for the group based on molecular data. In the second and third chapters, analysis of phylogeny, phylogeography and historical demography were performed, as well as morphological studies on allopatric population of Mimagoniates microlepis and Glandulocauda melanopleura, respectively.

Thesis (M.Sc. (Physiology)) -- University of Limpopo, 1993. / Refer to the document / University of Limpopo Research Office

Thesis (M.Sc. ( Physiology )) --University of Limpopo, 2011 / Refer to document / the National Research Foundation

The objective of this study was to determine the relationship between fish assemblage structure and habitat in streams dominated by an agricultural landscape. Fishes from 20 natural and 20 channelized streams were sampled using electrofishing gear in East Central Indiana. Streams that had been channelized had a lower quality fish assemblage when compared to natural streams as measured by the Indiana V. Eastern Corn Belt Plain Index of Biotic Integrity (IBI). Stream habitat was evaluated using the Qualitative Habitat Evaluation Index (QHEI), which indicated that channelized streams had lower quality primarily due to a loss of heterogeneous habitat. Pearson correlation analysis relating ECB IBI and QHEI was positive and significant, and demonstrated that a reduction in riffle and pool areas associated with channelization was the most significant factor influencing the fish community. Furthermore, species lost when streams are channelized were predictable, and often represented environmentally sensitive species. The results of this study suggested that stream channel alterations have a negative and lasting influence on the fish assemblage which should be recognized prior to any stream development. / Department of Biology

Thesis (Ph.D.)--University of Western Sydney, Hawkesbury, 1999. / "A Thesis submitted to the Faculty of Science and Technology in fulfilment of the requirements for the Degree of Doctor of Philosophy". "November 1999". Bibliography : leaves 147-155.