No description available.

Modeling electrophoresis of peptides, proteins, DNA, blood cells and colloids is based on classical electrokinetic theory. The coupled field equations-Poisson, Navier-Stokes or Brinkman, and ion transport equations are solved numerically to calculate the electrophoretic mobilities. First, free solution electrophoretic mobility expressions are derived for weakly charged rigid bead arrays. Variables include the number of beads (N), their size (radius), charge, distribution (configuration), salt type, and salt concentration. We apply these mobility expressions to rings, rigid rods, and wormlike chain models and then apply the approach to the electrophoretic mobilities and translational diffusion constants of weakly charged peptides. It is shown that our bead model can predict the electrophoretic mobilities accurately. In order to make the method applicable at higher salt concentrations and/or to models consisting of larger sized subunits, account is taken of the finite size of the beads making up the model structure. For highly charged particles, it is also necessary to account for ion relaxation. This ion relaxation effect is accounted for by correcting "unrelaxed" mobilities on the basis of model size and average electrostatic surface, or "zeta" potential. With these corrections our model can be applied to the system with absolute electrophoretic mobilities exceeding approximately 0.20 cm2/kV sec and also models involving larger subunits. This includes bead models of duplex DNA. Along somewhat different lines, we have investigated the electrophoresis of colloidal particles with an inner hard core and an outer diffusive layer ("hairy" particles). An electrokinetic gel layer model of a spherical, highly charged colloid particle developed previously, is extended in several ways. The charge of the particle is assumed to arise from the deprotonation of acidic groups that are uniformly distributed over a portion (or all) of the gel layer. Free energy considerations coupled with Poisson-Boltzmann theory is used to calculate the change of the local pKa of the acidic groups depending on the local electrostatic environment. Based on the modeling of electrophoresis and viscosity, we predict that the thickness of the gel layer decreases as the salt concentration increases. And only the outermost portion of the gel layer is charged.

The otolith organs are commonly modeled as a system consisting of three distinct elements, a viscous endolymph fluid in contact with a rigid otoconial layer that is attached to the skull by a viscoelastic gel layer. However, in this model the gel layer is considered as a bi-layered viscoelastic solid and is modeled as a simple Kelvin-Voigt material. The governing differential equations of motion are derived and nondimensionalized yielding - three non-dimensional parameters: nondimensional viscosity, nondimensional elasticity and nondimensional density. These non-dimensional parameters are derived from experimental research. The shear stresses acting at the interface of the viscoelastic bi-layered gel are nondimensionalized and equated. The governing differential equations are then solved using finite difference techniques on a digital computer for a step-change in velocity and a constant acceleration stimulus. The results indicate that the inclusion of a viscoleastic bi-layered gel is essential for the model to produce greater otoconial layer deflections that are consistent with physiologic displacements. Future mathematical modeling of the otolith organs should include the effects of a viscoelastic bi-layered gel, as this is a major contributor to system damping and response and increased otoconial layer deflections. / Master of Science

L’hydratation en phase vapeur des verres inactif (simples et complexes) du domaine AVM (Atelier de Vitrification de Marcoule) a été étudiée en se focalisant sur l’influence de la composition du verre. Dans la première partie, les échantillons de verre ont été altérés à 50°C et 95% d’humidité relative, et les couches altérées (gel) ont été caractérisés par SEM, TEM, XRD, ToFSIMS et SAXS. Les résultats montrent que la teneur en aluminium par rapport à celle des alcalino-terreux joue un rôle clé dans la durabilité du verre. Lorsque le rapport molaire Al2O3/MgO<1, la vitesse d’hydratation en phase vapeur est augmentée de 10 à 20 fois par la formation des précipités riches en Mg. Dans d’autres cas, l’hydrolyse du réseau vitreux a été identifiée comme le mécanisme contrôlant la vitesse d’hydratation en phase vapeur. Des études complémentaires sur l’effet de la température et de l’humidité relative ont montré que le mécanisme prédominant d’hydratation en phase vapeur varie en fonction de la température et de la composition du verre. Dans la deuxième partie, des expériences avec des verres hydratés en phase vapeur puis immergés dans de l’eau pure ont montré que le gel n’avait pas d’effet passivant vis-à-vis l’altération aqueuse et que des phases secondaires formées pendant l’hydratation en phase vapeur pouvaient être solubles. Deuxièmement, une étude comparative de la structure des gels enrichies en ¹⁷O formées lors d’hydratation en phase vapeur (à 90 °C) et de l’altération aqueuse à très fort S/V par la spectroscopie RMN a montré pour la première fois, de la recondensation du bore avec de l’oxygène provenant de la phase vapeur. Les résultats suggèrent que l’altération du verre en phase vapeur n’est pas équivalente à l’altération en milieu aqueux à très fort S/V. / The vapor hydration of inactive surrogates of AVM (Atelier de Vitrification de Marcoule) glasses (simple and complex) has been studied in this thesis work with a special focus on the influence of glass composition. In the first part of the thesis, multiple glass samples were altered at 50°C and 95% RH and the altered samples were characterized using SEM, TEM, XRD, ToFSIMS and SAXS to study the altered (gel) layer. The results show that aluminum plays a key role in glass durability under the given conditions, especially in relative proportions to alkaline-earth elements. When the molar ratio of Al2O3/MgO<1, the overall vapor hydration rate was accelerated by 10-20 times due to the formation of Mg-rich smectites. In other cases, network-hydrolysis was identified as the rate controlling vapor hydration mechanism for the first six months. Complementary studies on the effect of temperature and relative humidity gave further insights into secondary phase precipitation, behavior of elements in the gel layer and altered layer morphology. These studies show that the predominant vapor hydration mechanism varies with temperature and glass composition as well. In the second part of the thesis, aqueous alteration experiments are discussed in two contexts. First, vapor hydrated glasses immersed in pure water showed that the gel layer did not have a passivating effect against aqueous alteration and that some of the secondary phases formed during vapor hydration are readily soluble. Secondly, comparative structural study of ¹⁷O enriched gel layers that were formed during vapor hydration (at 90°C) and aqueous alteration at a very high SA/V ratio using NMR spectroscopy showed for the first time, evidence of recondensation of boron with oxygen from the vapor phase. The results suggest that glass alteration in vapor phase is not equivalent to alteration in aqueous medium at a very high SA/Vratio.

<p>The human stomach normally contains high levels of bioactive nitric oxide (NO). This NO derives from salivary nitrate (NO₃^-) that is converted to nitrite (NO₂^-) by oral bacteria and thereafter non-enzymatically reduced in the acidic gastric lumen to NO. Nitrate is a common component in vegetables, and after ingestion it is absorbed in the small intestine. Interestingly, circulating nitrate is then concentrated by the salivary glands. Hence, intake of nitrate-rich vegetables results in high levels of NO in the stomach. The physiological effects of the high concentration of NO gas normally present in the gastric lumen have been hitherto unknown, and the present investigations were therefore conducted to address this issue.</p><p>NO produced in the gastric lumen after nitrate ingestion increased gastric mucosal blood flow and the thickness of the firmly adherent mucus layer in the stomach. The blood flow and mucus layer are essential defense mechanisms that protect the mucosa from luminal acid and noxious agents. Nonsteroidal antiinflammatory drugs (NSAID) are commonly prescribed and effective drugs for treating pain and inflammation, but are associated with severe gastrointestinal side effects. We demonstrated that a nitrate-rich diet protects against NSAID-induced gastric damage, as a result of the increased formation of NO in the stomach. We also showed that the gastroprotective effect attributed to nitrate depended completely on conversion of nitrate to nitrite by the bacterial flora colonizing the tongue, and that the oral microflora is therefore important in regulating physiological conditions in the stomach.</p><p>In summary, this thesis challenges the current dogma that nitrate intake is hazardous, and on the contrary suggests that dietary nitrate plays a direct role in regulating gastric homeostasis. It is likely that a sufficient supply of nitrate in the diet together with the oral microflora is essential for preventing pathological conditions in the gastrointestinal tract.</p>

The human stomach normally contains high levels of bioactive nitric oxide (NO). This NO derives from salivary nitrate (NO3-) that is converted to nitrite (NO2-) by oral bacteria and thereafter non-enzymatically reduced in the acidic gastric lumen to NO. Nitrate is a common component in vegetables, and after ingestion it is absorbed in the small intestine. Interestingly, circulating nitrate is then concentrated by the salivary glands. Hence, intake of nitrate-rich vegetables results in high levels of NO in the stomach. The physiological effects of the high concentration of NO gas normally present in the gastric lumen have been hitherto unknown, and the present investigations were therefore conducted to address this issue. NO produced in the gastric lumen after nitrate ingestion increased gastric mucosal blood flow and the thickness of the firmly adherent mucus layer in the stomach. The blood flow and mucus layer are essential defense mechanisms that protect the mucosa from luminal acid and noxious agents. Nonsteroidal antiinflammatory drugs (NSAID) are commonly prescribed and effective drugs for treating pain and inflammation, but are associated with severe gastrointestinal side effects. We demonstrated that a nitrate-rich diet protects against NSAID-induced gastric damage, as a result of the increased formation of NO in the stomach. We also showed that the gastroprotective effect attributed to nitrate depended completely on conversion of nitrate to nitrite by the bacterial flora colonizing the tongue, and that the oral microflora is therefore important in regulating physiological conditions in the stomach. In summary, this thesis challenges the current dogma that nitrate intake is hazardous, and on the contrary suggests that dietary nitrate plays a direct role in regulating gastric homeostasis. It is likely that a sufficient supply of nitrate in the diet together with the oral microflora is essential for preventing pathological conditions in the gastrointestinal tract.

<p>The gastrointestinal mucus gel layer and blood flow are two important mechanisms for protection at the pre-epithelial and sub-epithelial levels, respectively. <i>Helicobacter pylori</i> might circumvent these mechanisms and elicit a chronic inflammatory response with consequent ulcers in the stomach and duodenum. In this thesis, the physical state and properties of the adherent mucus gel layer was studied from the stomach to colon. Furthermore, the acute and chronic effects of <i>H. pylori</i> on the integrity of the mucus gel layer and mucosal blood flow were studied in the anesthetized rat.</p><p>A translucent mucus gel covers all studied segments of the gastrointestinal tract during fasting conditions, with the thickest layers in the colon and ileum. Carefully applied suction revealed that the mucus gel was a multi-layered structure comprising a firmly adherent layer covering the mucosa, impossible to remove, and a loosely adherent upper layer. The firmly adherent layer was thick and continuous in the corpus (80μm), antrum (154μm) and colon (116μm), but thin (<20μm) and discontinuous in the small intestine.</p><p>Following mucus removal, a rapid renewal of the loosely adherent layer ensued. The highest rate was observed in the colon with intermediate values in the small intestine. Mucus renewal in the stomach was attenuated on acute luminal application of water extracts from <i>H. pylori</i> (HPE). In animals with a chronic <i>H. pylori</i> infection the mucus renewal rate was unaffected, but the total gastric mucus gel thickness was reduced and the mucus secretory response to luminal acid (pH1) attenuated in the antrum. </p><p>HPE from type I strains acutely reduced corporal mucosal blood flow, measured with laser-Doppler flowmetry, by approximately 15%. The reduction in blood flow was mediated by a heat stable factor other than VacA and CagA. Inhibition of endogenous nitric oxide production with Nω-nitro-l-arginine augmented the decrease. However, ketotifen, a mast cell stabilizer, completely attenuated the effect of the extract as did the platelet activating factor (PAF) receptor-antagonist, WEB2086, thus depicting a detrimental role for the microvascular actions of PAF.</p>

<p>The stomach is frequently exposed to hazardous agents and to resist this harsh environment, several protective mechanisms exist. Of special interest is the gastric pathogen <i>Helicobacter pylori </i>which causes gastritis, ulcers and cancer but the mechanism leading to these diseases are still unclear. However it is very likely that <i>H. pylori </i>negatively influence the protection mechanisms that exist in the stomach. </p><p>The aims of the present investigation were first to develop an in vivo mouse model in which different protection mechanisms could be studied, and second to investigate the influence of <i>H. pylori</i> on these mechanisms. </p><p>An in vivo preparation of the gastric mucosa in mice was developed. This preparation allows studies of different gastric mucosal variables and can also be applied for studies in other gastro-intestinal organs. </p><p>Mice chronically infected with <i>H. pylori</i>, were shown to have a reduced ability of the mucosa to maintain a neutral pH at the epithelial cell surface. This could be due to the thinner inner, firmly adherent mucus gel layer, and/or to defective bicarbonate transport across the epithelium. The Cl^-/HCO₃^- exchanger SLC26A9 was inhibited by NH₄⁺, which also is produced by <i>H. pylori</i>. The mRNA levels of SLC26A9 were upregulated in infected mice, suggesting a way to overcome the inhibition of the transporter. Furthermore, the hyperemic response to acid pH 2 and 1.5 was abolished in these mice. The mechanisms by which the bacteria could alter the blood flow response might involve inhibition of the epithelial iNOS.</p><p>Water extracts of <i>H. pylori </i>(HPE) reduces the blood flow acutely through an iNOS and nerve-mediated pathway, possibly through the endogenous iNOS inhibitor ADMA. Furthermore, HPE alters the blood flow response to acid as the hyperemic response to acid pH 0.8 is accentuated in mice treated with HPE. </p>

The gastrointestinal mucus gel layer and blood flow are two important mechanisms for protection at the pre-epithelial and sub-epithelial levels, respectively. Helicobacter pylori might circumvent these mechanisms and elicit a chronic inflammatory response with consequent ulcers in the stomach and duodenum. In this thesis, the physical state and properties of the adherent mucus gel layer was studied from the stomach to colon. Furthermore, the acute and chronic effects of H. pylori on the integrity of the mucus gel layer and mucosal blood flow were studied in the anesthetized rat. A translucent mucus gel covers all studied segments of the gastrointestinal tract during fasting conditions, with the thickest layers in the colon and ileum. Carefully applied suction revealed that the mucus gel was a multi-layered structure comprising a firmly adherent layer covering the mucosa, impossible to remove, and a loosely adherent upper layer. The firmly adherent layer was thick and continuous in the corpus (80μm), antrum (154μm) and colon (116μm), but thin (&lt;20μm) and discontinuous in the small intestine. Following mucus removal, a rapid renewal of the loosely adherent layer ensued. The highest rate was observed in the colon with intermediate values in the small intestine. Mucus renewal in the stomach was attenuated on acute luminal application of water extracts from H. pylori (HPE). In animals with a chronic H. pylori infection the mucus renewal rate was unaffected, but the total gastric mucus gel thickness was reduced and the mucus secretory response to luminal acid (pH1) attenuated in the antrum. HPE from type I strains acutely reduced corporal mucosal blood flow, measured with laser-Doppler flowmetry, by approximately 15%. The reduction in blood flow was mediated by a heat stable factor other than VacA and CagA. Inhibition of endogenous nitric oxide production with Nω-nitro-l-arginine augmented the decrease. However, ketotifen, a mast cell stabilizer, completely attenuated the effect of the extract as did the platelet activating factor (PAF) receptor-antagonist, WEB2086, thus depicting a detrimental role for the microvascular actions of PAF.

The stomach is frequently exposed to hazardous agents and to resist this harsh environment, several protective mechanisms exist. Of special interest is the gastric pathogen Helicobacter pylori which causes gastritis, ulcers and cancer but the mechanism leading to these diseases are still unclear. However it is very likely that H. pylori negatively influence the protection mechanisms that exist in the stomach. The aims of the present investigation were first to develop an in vivo mouse model in which different protection mechanisms could be studied, and second to investigate the influence of H. pylori on these mechanisms. An in vivo preparation of the gastric mucosa in mice was developed. This preparation allows studies of different gastric mucosal variables and can also be applied for studies in other gastro-intestinal organs. Mice chronically infected with H. pylori, were shown to have a reduced ability of the mucosa to maintain a neutral pH at the epithelial cell surface. This could be due to the thinner inner, firmly adherent mucus gel layer, and/or to defective bicarbonate transport across the epithelium. The Cl-/HCO3- exchanger SLC26A9 was inhibited by NH4+, which also is produced by H. pylori. The mRNA levels of SLC26A9 were upregulated in infected mice, suggesting a way to overcome the inhibition of the transporter. Furthermore, the hyperemic response to acid pH 2 and 1.5 was abolished in these mice. The mechanisms by which the bacteria could alter the blood flow response might involve inhibition of the epithelial iNOS. Water extracts of H. pylori (HPE) reduces the blood flow acutely through an iNOS and nerve-mediated pathway, possibly through the endogenous iNOS inhibitor ADMA. Furthermore, HPE alters the blood flow response to acid as the hyperemic response to acid pH 0.8 is accentuated in mice treated with HPE.