The aim of the current study was to determine the organic iron (Fe) requirements of gilthead sea bream (Sparus aurata). A total number of four experiments have been carried out each one for 12 weeks, in order to address and extend the knowledge on nutritional issues and challenges related with the culture of the gilthead sea bream in the Greek aquaculture industry and therefore enhance the fish health status under intensive culture conditions. These experiments aimed to determine the optimum level of organic Fe supplemented in commercial type diets of sea bream, the comparison between an organic Fe form and two inorganic Fe forms added in the diet of the fish, the effect of supplemented organic Fe on sea bream species exposed to oxygen deprivation stressors related to poor aquaculture husbandry practices and finally the interaction of organic Fe in the diet of sea bream with various levels of other trace minerals (Zn, Cu). The parameters evaluated were the growth performance of the fish, the Fe concentration in three selected tissues (the spleen, the liver and the muscle), the haematological status of the fish (the haematocrit, the red blood cell count, and the haemoglobin) and both the humoral and cellular immunology of the fish (the antibacterial activity of serum and the respiratory burst respectively). 150 mg/Kg of added organic Fe appears to be the recommended level as well as the minimum amount on fish exposed to overstocking conditions. The comparison between the two inorganic Fe forms (Ferrous Sulphate and Ferrous Carbonate) added in the diets show no significant effect on the fish. While, the fish fed the diets with 150 mg/Kg organic Fe and Cu levels lower that 5 mg/Kg had higher Hb values.

Tesis por compendio / [ES] La acuicultura se proyecta como un medio vital para alimentar de manera sostenible a la creciente población mundial. Sin embargo, para lograrlo, la producción de peces debe abordarse con sostenibilidad y adaptabilidad en mente, especialmente frente a desafíos como el cambio climático y la disminución de recursos. Esto requiere innovaciones en genética y nutrición para garantizar la resiliencia de las poblaciones de peces cultivados. Comprender las interacciones entre organismos, microbiota y el medio ambiente es crucial, y las tecnologías ómicas ofrecen una manera de profundizar en estas dinámicas. Se ha secuenciado el genoma del dorado, una especie significativa de acuicultura europea, lo que ha llevado a conocer la expansión génica y la plasticidad fenotípica. Esta tesis tuvo como objetivo aprovechar este conocimiento integrando diversas aproximaciones ómicas para anotar el genoma y la microbiota intestinal de esta importante especie mediterránea. El enfoque se centró en acciones para hacer más sostenibles las prácticas futuras de acuicultura. Un aspecto crítico abordado fue la gestión de los niveles de oxígeno, dada su disminución debido al cambio climático. Comprender las respuestas de los peces al oxígeno reducido es vital para la acuicultura sostenible. La investigación sobre el dorado reveló adaptaciones a la hipoxia leve, incluida una disminución general de la respuesta metabólica y variaciones a nivel de expresión génica. La selección genética y los avances en piensos acuícolas también son esenciales para la acuicultura sostenible. La tesis monitoreó la evolución de los peces y la dieta junto con un programa de cría para el crecimiento, revelando respuestas diferenciales en peces alimentados con recursos marinos reducidos. La selección genética por un crecimiento rápido es capaz de influir en la composición y la actividad de la microbiota intestinal. La caracterización de esta comunidad también reveló su importancia en la salud y el crecimiento de los peces. Los factores genéticos parecían jugar un papel más importante que la dieta en la formación de la composición de la microbiota intestinal, pero las interacciones entre genética y dieta influenciaron tanto las respuestas del huésped como las microbianas. En resumen, la tesis presenta resultados prometedores para mejorar el crecimiento, la salud y la adaptación ambiental en especies de acuicultura, contribuyendo también a la sostenibilidad del sector acuícola. / [CA] L'aqüicultura es projecta com un mitjà vital per a alimentar de manera sostenible la creixent població mundial. No obstant això, per a aconseguir-ho, la producció de peixos ha d'abordar-se amb sostenibilitat i adaptabilitat en ment, especialment front a desafiaments com el canvi climàtic i la disminució de recursos. Això requereix innovacions en genètica i nutrició per a garantir la resiliència de les poblacions de peixos cultivats. Comprendre les interaccions entre organismes, microbiota i el medi ambient és crucial, i les tecnologies òmiques oferixen una manera de profunditzar en aquestes dinàmiques. S'ha sequenciat el genoma de l'orada, una espècie significativa d'aqüicultura europea, la qual cosa ha portat a conèixer l'expansió gènica i la plasticitat fenotípica de l'espècie. Aquesta tesi té com a objectiu aprofitar aquest coneixement integrant diverses aproximacions òmiques per a anotar el genoma i la microbiota intestinal d'aquesta important espècie mediterrània. L'enfocament es va centrar en accions per a fer més sostenibles les pràctiques futures d'aqüicultura. Un aspecte crític abordat va ser la gestió dels nivells d'oxigen, donada la seua disminució a causa del canvi climàtic. Comprendre les respostes dels peixos a l'oxigen reduït és vital per a l'aqüicultura sostenible. La investigació va revelar adaptacions a la hipòxia lleu, inclosa una disminució general de la resposta metabòlica i variacions a nivell d'expressió gènica. La selecció genètica i els avanços en pinso per a l'aqüicultura també són essencials per a la sostenibilitat del sector. La tesi va monitorar l'evolució dels peixos i la dieta juntament amb un programa de sel·lecció genètica per creixement, revelant respostes diferencials en peixos alimentats amb recursos marins reduïts. La selecció genètica per a un creixement ràpid és capaç d'influir en la composició i l'activitat de la microbiota intestinal. La caracterització d'aquesta comunitat també va revelar la seua importància en la salut i el creixement dels peixos. Els factors genètics semblaven jugar un paper més important que la dieta en la formació de la composició de la microbiota intestinal, però les interaccions entre genètica i dieta van influir tant en les respostes de l'organisme com en les microbianes. En resum, la tesi presenta resultats prometedors per a millorar el creixement, la salut i l'adaptació ambiental en espècies d'aqüicultura, contribuint també a la sostenibilitat del sector aqüícola. / [EN] Aquaculture is projected as a vital means to feed the growing global population sustainably. However, to achieve this, fish production must be approached with sustainability and adaptability in mind, especially in the face of challenges like climate change and resource depletion. This requires innovations in genetics and nutrition to ensure the resilience of farmed fish populations. Understanding the interactions between organisms, microbiota, and the environment is crucial, and omics technologies offer a way to delve deeper into these dynamics. The genome of the gilthead sea bream, a significant European aquaculture species, has been sequenced, leading to insights into gene expansion and phenotypic plasticity. This thesis aimed to leverage this knowledge by integrating various omics approaches to annotate the genome and gut microbiome of this important Mediterranean species. The focus was on actions to conserve and "green" future aquaculture practices. One critical aspect addressed was the management of oxygen levels, given their declining availability due to climate change. Understanding fish responses to reduced oxygen is vital for sustainable aquaculture. Research on gilthead sea bream revealed adaptations to mild hypoxia, including a hypo-metabolic general response and changes in metabolic processes and gene expression profiling. Selective breeding and advancements in aquafeeds are also essential for sustainable aquaculture. The thesis monitored fish and diet evolution alongside a breeding program for growth, revealing differential responses in fish fed with reduced marine resources. Genetic selection for fast growth influenced the gut microbiota, highlighting the interconnectedness of genetics, diet, and microbial communities. Characterization of the gut microbiota revealed its importance in fish health and growth. Genetic factors appeared to play a more significant role than diet in shaping the gut microbiota composition, but interactions between genetics and diet influenced both host and microbial responses. Overall, the thesis presents promising outcomes for enhancing growth, health, and environmental adaptation in aquaculture species. By understanding the interconnectedness of genetics, nutrition, and microbiota, it aims to contribute to the sustainability of the aquaculture sector. / This PhD thesis has been elaborated by the PhD candidate thanks to two research contracts appointed to the framework of two H2020 European projects: AQUAEXCEL2020 “AQUAculture infrastructures for EXCELlence in European fish research towards 2020” (2015-2020; grant agreement nº 652831), and AquaIMPACT “Genomic and nutritional innovations for genetically superior farmed fish to improve efficiency in European aquaculture” (2019-2023; grant agreement nº 818367). During the thesis, the candidate completed a 3-months (91 days) stay in the Centre for Integrative Genetics (CIGENE), belonging to the Norwegian University of Life Sciences (NMBU) in Ås, Norway. This stay was financed by an EMBO Scientific Exchange Grant (grant agreement nº 10168). A grant from the iMOVE program from CSIC (grant agreement nº IMOVE23080) was also awarded, but not financially executed. Core publications of this thesis were funded by: AQUAEXCEL2020 H2020 EU Project (652831); PerformFISH H2020 EU Project (H2020-SFS-2016-2017; 727610); AquaIMPACT H2020 EU Project (818367); ThinkInAzul (THINKINAZUL/2021/024, PRTR-C17.I1); Bream-AquaINTECH (RTI2018–094128-B-I00); The rest of publications in which the candidate was involved received extra funding from: GAIN H2020 EU Project (773330) y AQUAEXCEL3.0 H2020 EU Project (871108) / Naya Català, F. (2024). The Two Genomes of Gilthead Sea Bream (Sparus aurata): a Multi-Omics and Holobiont Approach [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/205692 / Compendio

Conselho Nacional de Desenvolvimento Científico e Tecnológico / The essential oil (EOs) extracted from plants Hesperozygis ringens and Lippia alba possess anesthetic and sedative properties and is an alternative to traditional anesthetics used in aquaculture for ease of handling and/or reduce stress. In this sense, the study aimed to investigate the effects of these EOs on the physiology of fish, through physiological, biochemical and endocrine indicators. In the article 1 was determined (a) the anesthetic activity of the EOs of H. ringens (EOHR) and L. alba (EOLA) and (b) its effects on silver catfish (Rhamdia quelen) after induction and recovery from anesthesia. Fish were subjected to one of the following treatments for each EO: basal group, control or anesthetized (150, 300 or 450 uL L-1 EO), evaluating the ventilatory rate (VR) during the induction period and thereafter transferred to anesthetics-free tanks for recovery from anesthesia. At 0, 15, 30, 60 and 240 min of recovery, samples of plasma and gills were collected to measure metabolic indicators and ionregulatory enzymes, respectively. In the article 2, the effects of prolonged exposure to low EOHR concentrations were studied on silver catfish. After 6 h of exposure to 0 (control), 30 or 50 uL L-1 EOHR added to water, it was analyzed: VR, metabolic indicators of stress in plasma, enzyme activity in liver, and expression of pituitary hormones (growth hormone - GH, prolactin - PRL and somatolactina - SL). In the manuscript, (a) evaluated the effectiveness of anesthesia EOLA on gilthead sea bream (Sparus aurata) and (b) we investigated the effects of 35 uL L-1 EOLA and 2-phenoxyethanol (2-PHE) on the stress response in gilthead sea bream undergoing persecution. After 4 h of exposure, the plasma was sampled (for the determination of cortisol, metabolites and osmolality), brain and pituitary (to evaluate the expression of endocrine indicators). In the article 1, anesthesia with EOs caused changes in some parameters measured in silver catfish, but did not prevent the restoration of most of the indicators assessed after 240 min of recovery. In the article 2, 50 uL L-1 EOHR led to an increase of glucose, lactate, protein and osmolality, as well as an increase in metabolic enzyme activity and reduced expression of GH and SL. In the manuscript, gilthead sea bream exposed to EOLA, stressed or not, exhibited higher levels of cortisol, glucose, lactate and osmolality. EOLA exposure added to the stress reduced the expression levels of CRH-BP (corticotropin releasing hormone bound to protein). PRL expression was reduced in the stressed control group and after exposure to EOLA and 2-PHE in fish not stressed. Higher expression of pro-opiomelanocortin (POMC) "a" and "b" were observed in fish stressed and exposed to EOLA and 2-PHE, respectively. We conclude that: (1) the EOLA is more efficient for silver catfish that EOHR in anesthesia concentrations; (2) for sedating the fish, it is recommended 30 uL EOHR L-1 (or less); (3) the EOLA was effective as an anesthetic for gilthead sea bream at 100-300 uL L-1, but for 4 h exposure, the 2-PHE was more effective in preventing the stress response. / Os óleos essenciais (OEs) extraídos das plantas Hesperozygis ringens e Lippia alba possuem propriedades anestésica e sedativa, constituindo uma alternativa aos anestésicos tradicionalmente usados em aquicultura para facilitar o manejo e/ou reduzir o estresse. Neste sentido, o estudo teve por objetivo investigar os efeitos desses OEs sobre a fisiologia de peixes, através de indicadores fisiológicos, bioquímicos e endócrinos. No artigo 1 determinou-se (a) a atividade anestésica dos OEs de H. ringens (OEHR) e L. alba (OELA) e (b) seus efeitos em jundiá (Rhamdia quelen) depois da indução e recuperação da anestesia. Os peixes foram submetidos a um dos seguintes tratamentos para cada OE: grupo basal, controle ou anestesiado (150, 300 ou 450 μL L-1 OE), avaliando-se a taxa ventilatória (TV) durante o período de indução e, posteriormente, transferidos para aquários sem anestésicos para recuperação da anestesia. Nos tempos 0, 15, 30, 60 e 240 min de recuperação foram realizadas amostragens de plasma e brânquias para medir indicadores metabólicos e enzimas ionorregulatórias, respectivamente. No artigo 2, os efeitos da exposição prolongada de jundiás a baixas concentrações do OEHR foram estudados. Após 6 h de exposição a 0 (controle), 30 ou 50 μL L-1 OEHR adicionado à água, analisou-se: TV, indicadores metabólicos e de estresse em plasma, atividade enzimática em fígado e expressão de hormônios hipofisários (hormônio do crescimento - GH, prolactina - PRL e somatolactina - SL). No manuscrito (a) avaliou-se a eficácia anestésica do OELA em dourada (Sparus aurata) e (b) investigaram-se os efeitos de 35 μL L-1 de OELA e 2-fenoxietanol (2-PHE) sobre a resposta ao estresse em douradas submetidos à perseguição. Após 4 h de exposição, foram amostrados plasma (para determinação dos níveis de cortisol, metabólitos e osmolalidade), cérebro e hipófise (para avaliar a expressão de indicadores endócrinos). No artigo 1, a anestesia com os OEs provocou alterações em alguns parâmetros medidos em jundiás, mas não impediu a restauração da maioria dos indicadores avaliados após 240 min de recuperação. No artigo 2, 50 μL L-1 do OEHR provocou a elevação dos níveis de glicose, lactato, proteína e osmolalidade, bem como aumento na atividade de enzimas metabólicas e redução na expressão do GH e SL. No manuscrito, douradas expostos ao OELA, estressados ou não, exibiram maiores níveis de cortisol, glicose, lactato e osmolalidade. A exposição ao OELA somado ao estresse reduziu os níveis de expressão de CRH-BP (hormônio liberador de corticotrofina ligado à proteína). A expressão de PRL foi reduzida no grupo controle estressado e após a exposição ao OELA e 2-PHE em peixes não estressados. Maiores expressões de pro-opiomelanocortina (POMC) a e b foram observadas em peixes estressados e expostos ao OELA e 2-PHE, respectivamente. Conclui-se que: (1) o OELA é mais eficiente para jundiás que o OEHR em concentrações para anestesia; (2) para sedar os peixes, recomenda-se 30 μL L-1 do OEHR (ou menos); (3) o OELA foi eficaz como anestésico para dourada entre 100-300 μL L-1, mas para 4 h de exposição o 2-PHE foi mais eficiente em prevenir a resposta ao estresse.