In metabolic engineering of prokaryotes, combinatorial approaches have developed recently that induce random genetic perturbations to achieve a desired cell phenotype. A screening strategy follows the randomized genetic manipulations to select strain(s) with the more optimal phenotype of interest. This screening strategy is often divided into two categories: (i) a growth competition assay and (ii) selection by high-throughput screening. The growth competition assay involves culturing strains together. The strain with the highest growth rate will ultimately dominate the culture. This strategy is ideal for selecting strain with cellular fitness (e.g., solvent tolerance), but it does not work for selecting a strain that can over-produce a product (e.g., an amino acid). For the case of selecting highly productive phenotypes, high-throughput screening is used. This method analyzes strains individually and is costly and time-consuming. In this research, a synthetic genetic circuit was developed to select highly productive phenotypes using a growth competition assay rather than high-throughput screening. This novel system is called Feed-back Inhibition of Transcription for Growth Selection (FITSelect), and it uses a natural feedback inhibition mechanism in the L-arginine production pathway to select strains (transformed with a random genomic library) that can over-produce L-arginine in E. coli DH10B. With FITSelect, the cell can thrive in the growth competition assay when L-arginine is over-produced (i.e., growth is tied to L-arginine production). Cell death or reduced growth results if L-arginine is not over-produced by the cell. This system was created by including an L-arginine concentration responsive argF promoter to control a ccdB cell death gene in the FITSelect system. The effects of ccdB were modulated by the antidote ccdA gene under control of an L-tryptophan responsive trp promoter. Several insights and construction strategies were required to build a system that ties the growth rate of the cell to L-arginine concentrations. / Master of Science

Nous avons étudié in situ et en temps réel la structure de grains du silicium multi-cristallin issue de la solidification dirigée en utilisant l’imagerie X synchrotron. La radiographie X permet de suivre l’évolution de l’interface solide/liquide et de caractériser sa dynamique et sa morphologie. La topographie X nous donne des informations sur la structure de grains formée, les contraintes et les défauts issus de la solidification. Nous avons montré l’importance la préparation de l’état initial de la solidification en particulier pour les expériences de reprise sur germe. L’analyse de la morphologie de l’interface solide/liquide nous a permis de caractériser la surfusion cinétique du front de solidification, de comprendre l’évolution des sillons de joints de grains et d’analyser les mécanismes de compétition de grains ainsi que de révéler l’impact des impuretés sur la structure de grains formée à l’issue de la solidification. Le phénomène de maclage a aussi été observé dans nos expériences et nous avons démontré que les macles dans le silicium multi-cristallin peuvent être des macles de croissance. Deux types de macles ont été identifiés et le phénomène de compétition de grains en présence de macles étudié. / We studied in situ and real-time the grain structure of multi-crystalline silicon from directional solidification using synchrotron X-ray imaging techniques. X-ray Radiography gives information on the evolution, dynamics and morphology of the solid/liquid interface. X- ray Topography gives more information on the grain structure, strains and defects that occur during solidification step. We showed the importance of the preparation of the initial stage of solidification in particular in the experiments where solidification is initiated from seed. The analysis of the solid/liquid interface morphology allowed us to characterize the kinetic undercooling of the solidification front, to understand the evolution of the grains boundary grooves and to analyze the mechanisms of grain competition and also to reveal the impurities impact on the grain structure formed at the end of the solidification. We also observed twinning phenomenon in our experiments and we demonstrated that twins in multi-crystalline silicon can be growth twins. Two kinds of silicon twins have been identified and the grain competition phenomenon with twins studied.