Anthropogenic activities are fundamentally altering the chemistry of the world’s oceans. Many of these modifications could have a significant impact on the health of marine organisms. Yet, despite being proposed as one of the most significant threats that marine ecosystems face, to date very little is known about the impact of anthropogenic climate change, and ocean acidification in particular, on host defence. The aims of this thesis are to investigate the impact of environmental stressors on the invertebrate immune response, providing empirical data on how anthropogenically induced stressors will impact the invertebrate immune system and how this will impact organism condition and subsequent physiological trade-offs. Exposure to reduced seawater pH and increased temperature significantly reduced the immune response in the blue mussel, Mytilus edulis. This reduction in immune response could indicate stress-induced immune dysfunction. However, the immune system protects an organism from infectious disease, ensuring survival, and should therefore be evaluated functionally rather than immunologically. By subsequently exposing mussels to a bacterial challenge this study demonstrated that an earlier study which measured a reduction in host defence represented a trade-off of immune system maintenance costs, with mussels maintaining a capacity to up-regulate immune defence when required. However, whilst this immune plasticity ensures mussels are able to survive a pathogen exposure, such a strategy appears to be physiologically costly. This cost is seen as a reduction in reproductive investment, an altered energy metabolism and an altered fatty acid composition in organisms exposed to low pH. Therefore the overarching picture that emerges is, without measuring physiological processes functionally, and in neglecting any physiological trade-offs, it is possible that many studies may misinterpret the complex physiological responses of marine organisms to ocean acidification.

Antimicrobial peptides (AMPs) are small proteins produced by epithelial surfaces, which have broad-spectrum antimicrobial and immunomodulatory activities. In the lung, skin and alimentary tract AMPs are known to be important in infectious and inflammatory conditions. Far less is known regarding the role of AMPs within the female reproductive tract, but as infection and inflammation are causes of preterm labour, AMPs may have a key function in maintain and protecting pregnancy. The major groups of human AMPs include the human beta defensins (HBDs), two antileukoproteinases (secretory leukocyte protease inhibitor (SLPI) and Trappin-2/Elafin), and the human cathelicidin hCAP18/LL-37, with several studies identifying their presence at sites throughout the reproductive tract. The cervix in pregnancy is positioned between the upper genital tract containing the developing fetus and the lower tract where infections usually arise. I hypothesise that AMPs are fundamental to mucosal immune defence of the cervix in pregnancy, preventing ascending infection and excessive inflammation that can cause preterm labour. This thesis focused on the human cathelicidin hCAP18/LL-37 and its role within the cervix and vagina. The aims of this thesis were to; investigate the inflammatory effects of LL-37 from cervical and vaginal derived epithelial cells and determine the pathways and receptors in which LL-37 may elicit its effects and how production may be regulated; investigate the role of CRAMP in a mouse model of preterm birth; and determine the production of AMPs by the pregnant cervix whilst investigating the relationship between AMP concentrations in cervicovaginal secretions and preterm labour. The inflammatory effect of LL-37 was investigated using cell lines derived from endocervical, ectocervical and vaginal epithelium. The study of these cell lines suggests divergent responses of cervical and vaginal epithelial cells. LL-37 mediated induction of IL-8 and IL-6 production from endocervical epithelial cells was observed in a dose-dependent and time-dependent manner, whilst ectocervical and vaginal cells also respond to treatment with LL-37 through IL-8 and IL-6 production. To determine a possible mechanism of action of LL-37 on IL-8 and IL-6 in the three cell lines, inhibitors against MAPK cascades, ERK, p38 MAPK and JNK, and known LL-37 receptors were investigated. In endocervical cells LL-37 mediated IL-8 occurs via activation of unidentified GPCRs, whilst in ectocervical cells this effect on IL‐8 and IL-6 is via the activation of ERK and p38 MAPK cascades. The mechanism by which LL-37 induces IL-8 secretion in vaginal epithelial cells remains unknown. Expression of LL-37 was shown to be mediated by vitamin D3 in vitro in cervical and vaginal epithelial cells. However when this relationship was investigated in vivo, using matched serum and cervicovaginal secretions from woman at early pregnancy, no correlation was observed between circulating vitamin D and cervicovaginal or circulating hCAP18/LL-37. However, the majority of women in this study reported with insufficient levels of vitamin D, which may effect the relationship observed with hCAP18/LL-37. Using a mouse model of LPS-induced preterm labour, to mimic the presence of intrauterine infection bacterial infection, I aimed to characterise the role of CRAMP, the mouse orthologue of hCAP18/LL-37, in the lower inflammatory and immune response that results in preterm labour. Wild type C57Bl/6J mice receiving an intrauterine injection of LPS deliver prematurely, within 24 hours of injection. However mice deficient in CRAMP (Camp -/-) receiving an intrauterine injection of LPS deliver significantly later and have a non-significant increase in pup survival compared to wild type C57Bl/6J mice. Cervical tissue collected post partum showed no difference in inflammatory markers between wild type C57Bl/6J and Camp -/- mice, however there was increased expression of the neutrophil chemoattractant marker, Cxcl5, and the neutrophil marker, Ngp in Camp -/- mice. In the lower genital tract, levels of antimicrobial peptides were determined in samples of cervicovaginal secretions collected from pregnant women. AMPs, hCAP18/LL-37, HBD-2 and SLPI were found in cervicovaginal secretions, and levels of hCAP18/LL-37 were increased in women with the common vaginal infection bacterial vaginosis. However no relationship was identified between the concentration of AMPs and preterm birth in this study. This work has shown that the lower genital tract, where infections that are associated with preterm labour originate, expresses the human cathelicidin hCAP18/LL-37. It may play an important role in modulating the immune response to invading infection associated with preterm labour. Further investigation of these responses may increase understanding of the physiology and pathophysiology of labour, and lead to strategies for the prevention of premature delivery.

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La diversité génétique intra-spécifique constitue le potentiel adaptatif des espèces et, à ce titre, elle est donc indispensable pour l'évolution de celles-ci. Chez les vertébrés, les gènes du complexe majeur d'histocompatibilité (CMH) sont une composante essentielle de quoi permet de faire face aux parasites en initiant une réponse immunitaire. La pression de sélection exercée par les parasites et la sélection sexuelle via le choix du partenaire devraient donc agir sur la diversité génétique du CMH. Cependant, la distinction empirique des pressions sélectives agissant sur la diversité génétique du CMH en milieu naturel nécessite de suivre un grand nombre individus tout au long de leur vie et d'effectuer leur génotypage. Le premier objectif de cette thèse a donc été développer et appliquer un protocole de génotypage chez la marmotte Alpine (Marmota marmota), sur quatre loci du CMH décrits précédemment. Ceci permet par la suite d'étudier, dans une population de marmottes Alpines vivant en milieu naturel, si les caractéristiques génétiques du CMH influencent (1) le choix de partenaire, (2) la présence et/ou l'abondance de trois espèces de parasites intestinaux et (3) leur survie juvénile. Ce travail a fourni une méthode appropriée pour la détermination de génotypes fiables sur un grand nombre d'échantillons en utilisant des techniques de séquençage de nouvelle génération. Ensuite, nous avons constaté l'existence d'un choix de partenaire basé sur le CMH mais aussi sur les caractéristiques de l'ensemble du génome. Par la suite, nous avons mis en évidence le faible rôle du CMH sur la présence et abondance de trois espèces de parasites intestinaux. Finalement, nous avons constaté que l'association entre la survie juvénile et les caractéristiques génétiques du CMH et de l'ensemble du génome ont changé au cours des vingt-trois ans de suivi de la population. Dans l'ensemble, cette thèse présente une approche intégrée de l'étude des rôles du CMH sur une population contemporaine de marmottes Alpines / Intra-specific genetic diversity represents the true potential of adaptation of species and is thus essential for evolutionary change. In vertebrates, the genes of the major histocompatibility complex (MHC) play a critical role in vertebrate disease resistance by initiating immune response. The selective pressure carried out by parasites and sexual selection via mate choice are supposed to maintain the extreme diversity found in the MHC. Yet, empirical differentiation of selective pressures acting on MHC in the wild requires individually based monitoring of a large number of individuals and genotyping them. The aim of this thesis was firstly to develop and apply a genotyping protocol in Alpine marmots (Marmota marmota) to genotype four previously described MHC loci. This allows subsequently to evaluate, in a wild population of Alpine marmots, if MHC characteristics play a role (1) on mate choice, (2) on the presence and/or abundance of three intestinal parasite species and (3) on juvenile survival. This work provided a suitable method to reliably genotype large number of individuals using next-generation sequencing techniques. Then, we found evidences for female mate choice based on MHC but also on neutral genetic characteristics. Subsequently, we evidenced the weak role of MHC characteristics on the presence and abundance of three intestinal parasites. Finally, we found evidences for a change of the effect of genetic diversity at both MHC and neutral loci on juvenile survival during the 23-year monitoring study. Overall, this thesis comprises an integrated approach for the study of the roles of MHC in a contemporaneous population of Alpine marmots