This thesis investigates the impact of avian malaria (Haemosporidia) parasites on the outcome of interspecific competition between two closely related bird species, pied (Ficedula hypoleuca) and collared (F. albicollis) flycatchers. I further investigated how variation in timing of breeding, life history strategies and immune competence genes (MHC genes) modulate the fitness effects of malaria parasites in one of the two species i.e. collared flycatchers. Collared flycatchers colonized the Baltic island Öland in the late 1950-ties and has since then been expanding their breeding range while competitively excluding pied flycatchers from the favourable habitats (deciduous forests). I investigated the underlying mechanisms behind this exclusion by combining detailed long-term breeding data with modern molecular genetic techniques identifying both the presence/absence and lineage specificity of haemosporidian blood parasites. I found that the rapid decline of pied flycatchers can be explained by the combined effects of competition over nestling sites, hybridization and haemosporidian infections. Haemosporidian infections have a negative impact on survival of pied flycatcher females but no detectable effect on collared flycatchers’ longevity or reproductive success. This may be due to the fact that collared flycatchers carry (and are potentially exposed to) a higher diversity of parasites than pied flycatchers, which in turn may select for a higher diversity of MHC genes and hence a better overall protection from the negative impact of parasites. Indeed, functional MHC diversity correlates negatively with malaria prevalence among collared flycatchers from Gotland. Moreover, I found that both, malaria infection intensity and immunoglobulin level influences how infected collared flycatchers respond to increased nestling food-demands. The latter results mean that there is variation in allocation strategies (i.e. in resource allocation between reproductive effort and immune competence) within the collared flycatcher population. Hence, this population has the ability to respond to novel selection pressures in terms of optimal allocation of resources into immune functions. In summary, my results show that local parasites may facilitate the expansion of a new colonizer. This is important in the context of global climate change that will probably increase the colonization rate of southern species and lead to novel host-parasite interactions.

La diversité génétique intra-spécifique constitue le potentiel adaptatif des espèces et, à ce titre, elle est donc indispensable pour l'évolution de celles-ci. Chez les vertébrés, les gènes du complexe majeur d'histocompatibilité (CMH) sont une composante essentielle de quoi permet de faire face aux parasites en initiant une réponse immunitaire. La pression de sélection exercée par les parasites et la sélection sexuelle via le choix du partenaire devraient donc agir sur la diversité génétique du CMH. Cependant, la distinction empirique des pressions sélectives agissant sur la diversité génétique du CMH en milieu naturel nécessite de suivre un grand nombre individus tout au long de leur vie et d'effectuer leur génotypage. Le premier objectif de cette thèse a donc été développer et appliquer un protocole de génotypage chez la marmotte Alpine (Marmota marmota), sur quatre loci du CMH décrits précédemment. Ceci permet par la suite d'étudier, dans une population de marmottes Alpines vivant en milieu naturel, si les caractéristiques génétiques du CMH influencent (1) le choix de partenaire, (2) la présence et/ou l'abondance de trois espèces de parasites intestinaux et (3) leur survie juvénile. Ce travail a fourni une méthode appropriée pour la détermination de génotypes fiables sur un grand nombre d'échantillons en utilisant des techniques de séquençage de nouvelle génération. Ensuite, nous avons constaté l'existence d'un choix de partenaire basé sur le CMH mais aussi sur les caractéristiques de l'ensemble du génome. Par la suite, nous avons mis en évidence le faible rôle du CMH sur la présence et abondance de trois espèces de parasites intestinaux. Finalement, nous avons constaté que l'association entre la survie juvénile et les caractéristiques génétiques du CMH et de l'ensemble du génome ont changé au cours des vingt-trois ans de suivi de la population. Dans l'ensemble, cette thèse présente une approche intégrée de l'étude des rôles du CMH sur une population contemporaine de marmottes Alpines / Intra-specific genetic diversity represents the true potential of adaptation of species and is thus essential for evolutionary change. In vertebrates, the genes of the major histocompatibility complex (MHC) play a critical role in vertebrate disease resistance by initiating immune response. The selective pressure carried out by parasites and sexual selection via mate choice are supposed to maintain the extreme diversity found in the MHC. Yet, empirical differentiation of selective pressures acting on MHC in the wild requires individually based monitoring of a large number of individuals and genotyping them. The aim of this thesis was firstly to develop and apply a genotyping protocol in Alpine marmots (Marmota marmota) to genotype four previously described MHC loci. This allows subsequently to evaluate, in a wild population of Alpine marmots, if MHC characteristics play a role (1) on mate choice, (2) on the presence and/or abundance of three intestinal parasite species and (3) on juvenile survival. This work provided a suitable method to reliably genotype large number of individuals using next-generation sequencing techniques. Then, we found evidences for female mate choice based on MHC but also on neutral genetic characteristics. Subsequently, we evidenced the weak role of MHC characteristics on the presence and abundance of three intestinal parasites. Finally, we found evidences for a change of the effect of genetic diversity at both MHC and neutral loci on juvenile survival during the 23-year monitoring study. Overall, this thesis comprises an integrated approach for the study of the roles of MHC in a contemporaneous population of Alpine marmots