The results of the laboratory study of reaction rate coefficients of several ion- molecule reactions with atomic and molecular hydrogen and molecular deuterium at low temperatures are presented in the thesis. The reaction rate coefficients of the N+ and H+ reaction with H2 were measured with respect to the nuclear spin configuration and rotational excitation of H2. The reactions of anions were a subject of the isotope exchange and isotope effect study. The measurements of the rate coefficients of H2O and D2O formation in the reaction of O- with H2 and D2, isotope exchange reactions OH- + D2 and OD- + H2, and associative detachment and charge transfer channels of D- + H interaction were performed. Experiments were carried out using an AB-22PT instrument with an ion trap. It has producing, guiding, trapping, and detecting systems for ions and a separate source of atomic H. The cooling system allowed to measure the temperature dependencies of the reaction rate coefficients at temperatures relevant to astrochemistry (10 K - 300 K)

This thesis describes development of the new selected ion flow-drift tube mass spectrometry technique, SIFDT-MS, for online quantification of volatile organic compounds, VOCs, based on gas phase ion-molecule reactions. SIFDT-MS represents a new generation of the successfully used selected ion flow tube, SIFT- MS, analytical method. The essential extension of SIFDT-MS is the uniform electric field E applied across the flow tube reactor, thus converting it to the flow-drift tube where the ion processes can be governed by strength of field E. Newly introduces Hadamard modulation of the gate lens before the flow-drift tube enables direct ion residence, and correspondently ion-molecule reaction, time measurement that is necessary for the precise concentration calculations under variable conditions. The detailed experimental study of these processes results was carried out to form a basis of the analytical method. In order to overcome a well-known issue of SIFT-MS, when mass spectral peaks of isobaric ions overlap, the pseudoinverse matrix multiplication for isobaric mixtures was demonstrated. Finally two data mining approaches were successfully tested on the data of the fragmentation signals of seven monoterpene isomers obtained in SIFT-MS.

In the present work, the results of the experimental study of reactions of ions with molecular hydrogen in the temperature range 15 - 300 K using a 22-pole ion trap apparatus are presented. The reaction of OD- with para-enriched hydrogen was studied using a combination of the 22-pole ion trap apparatus with a para-hydrogen generator. Also reactions of O- with H2, D2, and HD were studied. These reactions have a channel of water production and a channel of hydrogen or deuterium transfer. Another field of study was a sequence of reactions of oxygen hydride cations with H2 and D2 which leads to the production of H3O+ or its isotopic variant, specifically reactions OH+ with H2, H2O+ with H2, D2O+ with H2, and D2O+ with D2. This reaction chain can be followed by the electron recombination of H3O+ or its isotopologue, which has a channel of water production.

<p>Mass spectrometry (MS) is a versatile analytical tool that is especially useful for identification of unknown compounds in mixtures when coupled with chromatography. In MS experiments, the analytes are ionized, separated based on their mass-to-charge (<i>m/z</i>) ratios, and detected. The molecular weight of the analyte can often be derived from the mass spectrum if stable molecular ions (M^•+) or stable protonated/deprotonated analyte molecules ([M+H]⁺ or [M-H]^–) are generated. Further, MS can also be used to obtain structural information for the ionized analytes via their fragmentation reactions. Tandem mass spectrometry (MSⁿ) experiments are powerful for the characterization of unknown compounds in mixtures without the need for coupling them with chromatography. In MSⁿ experiments, the analytes are ionized, the ions of interest are isolated and subjected to reactions, such as collision-activated dissociation (CAD) or ion-molecule reactions with neutral reagent molecules. The fragmentation pattern or the diagnostic ion-molecule reaction product ions can be utilized to elucidate the structures of the analytes. The fragment ions or diagnostic product ions can further be subjected to CAD to obtain more structural information. Besides analytical purposes, MSⁿ also provides a powerful tool for exploring the reactivities of reaction intermediates that are elusive, such as phenylcarbyne anions and phenylcarbene anions.</p> <p>The research described in this dissertation mainly focuses on the development of MSⁿ methods based on diagnostic gas-phase ion-molecule reactions followed by CAD for (1) the characterization of differently substituted ureas and (2) the differentiation of sulfonate esters from their isomeric analogs, such as sulfite esters and sulfones. HPLC was coupled with the MSⁿ methods discussed above to demonstrate its usefulness in the identification of compounds in mixtures. Additionally, a gas-phase reactivity study on phenylcarbyne anions is discussed in this dissertation. The phenylcarbyne anions were generated by CAD of two nitrogen molecules from negatively charged phenyl tetrazole precursors. Their reactivities towards various reagents were explored and rationalized with the help of quantum chemical calculations.</p>

4 Title: Reactions of astrophysically important positive ions with molecules and atoms at low temperatures Author: Serhiy Rednyk Department: Department of Surface and Plasma Science Supervisor of the doctoral thesis: prof. RNDr. Juraj Glosík, DrSc, Ph.D., Department of Surface and Plasma Science Abstract: In the present work, the results of the experimental study of reactions of ions with atomic and molecular hydrogen are presented. Experiments were performed using a cold radiofrequency 22-pole ion trap apparatus in the temperature range, relevant for interstellar clouds (from 300 down to 15 K). The present study is devoted to experimental investigation of the reactions of NH+, NH2 + and NH3 + ions with H2. The reaction of NH+ with H2 has two channels, which lead to NH2 + (about 97 %) and H3 + (3 %) formation with nearly constant reaction rate coefficients. The reaction of NH2 + + H2 produces only NH3 + ions and the measured reaction rate coefficient is decreasing with increasing temperature from 6∙10−10 cm3 s−1 to 2∙10−10 cm3 s−1 . The measured reaction rate coefficient of NH3 + with H2, producing NH4 +, is increasing with decreasing temperature from 80 K down to 15 K, confirming predicted mechanism of tunneling through a potential barrier. Reaction of NH+ + H was studied using a combination of the 22-pole...

This thesis describes the combination of two sources of cold atomic or molecular species which can be used to study a wide range of ion-molecule reactions. The challenges in forming these species and in determining the fate of reactive events are explored throughout. Reactions occur in a volume within a radio-frequency ion trap, in which ions have previously been cooled to sub-Kelvin temperatures. Ions are laser-cooled, with migration of ions slowed sufficiently to form a quasi-crystalline spheroidal structure, deemed a Coulomb crystal. Fluorescence emitted as a consequence of laser-cooling is detected; the subsequent fluorescence profiles are used to determine the number of ions in the crystal and, in combination with complementary simulations, the temperature of these ions. Motion imparted by trapping fields can be substantial and simulations are required to accurately determine collision energies. A beam of decelerated molecules is aimed at this stationary ion target. An ammonia seeded molecular beam enters a Stark decelerator, based on the original design of Meijer and co-workers. The decelerator uses time-varying electric fields to remove kinetic energy from the molecules, which exit at speeds down to 35 m/s. A fast-opening shutter and focussing elements are subsequently used to maximise the decelerated flux in the reaction volume while minimising undecelerated molecule transmission. Substantial fluxes of decelerated ammonia are obtained with narrow velocity distributions to provide a suitable source of reactant molecules. Combination of these two techniques permits studies of reactions between atomic ions and decelerated molecules that can be entirely state-specific. Changes in the Coulomb crystal fluorescence profile denote changes in the ion identities, the rate of these changes can be used to obtain rate constants. Determination of rate constants is even possible despite the fact that neither reactant nor product ions are directly observed. This work has studied reactions between sympathetically cooled Xe⁺ ions and guided ND3 and has obtained data consistent with prior studies. Determination of reactive events is complicated if ion identities can change without affecting the fluorescence profile, or if multiple reaction channels are possible. A range of spectroscopic techniques are discussed and considered in regards to determining rate constants and product identities. Pulsed axial excitation of trapped ions can follow rapid changes in average ion weights and subtle changes for small crystals. Time-of-flight mass spectrometry is also demonstrated using the trapping electrodes and is suitable for discrimination of ions formed within the trap.

Íons polihalogenados de Si, X3Si+ (X = F, Cl), são fragmentos facilmente gerados em espectrometria de massas por ionização eletrônica de compostos de silício polihalogenados. Estes cátions possuem um elevado caráter eletrofílico e desempenham um papel importante como intermediários em processos de corrosão auxiliados por plasma utilizados na fabricação de dispositivos em microeletrônica. Esta dissertação apresenta um estudo sobre a reatividade dos íons +SiCl3, em fase gasosa, perante uma série de substratos neutros simples como água, alcoóis, amônia, aminas e algumas bases doadoras de elétrons &pi;. As reações íon-molécula em fase gasosa foram caracterizadas do ponto de vista experimental por espectrometria de massas de ressonância ciclotrônica de íons por transformada de Fourier (FTICR) a pressões da ordem de 10-8 Torr. As reações foram acompanhadas em função do tempo de reação na cela do espectrômetro, o que permitiu a elucidação de uma série de reações sequenciais. O perfil de energia das reações e as estruturas dos íons silicênios formados nestas reações foram também caracterizados por métodos de química computacional, usando métodos ab initio e métodos baseados na teoria do funcional da densidade, a fim de elucidar o mecanismo das reações. Observou-se que o cátion +SiCl3 reage rapidamente em fase gasosa com os diversos substratos neutros através de processos semelhantes a reações de solvólise que resultam na adição do neutro seguida de eliminação de HCl. Em vários dos casos, foi possível observar a solvólise total do cátion com substituição dos três átomos de cloro. Os cálculos revelam que estas reações se processam inicialmente pela adição do eletrófilo aos centros ricos em densidade eletrônica dos substratos neutros e que estes adutos são mais estáveis que os reagentes isolados. O estado de transição destas reações envolve uma migração 1,3 de um hidrogênio e a energia calculada para o estado de transição é consideravelmente menor que a energia dos reagentes, fato este comum para reações rápidas íon/molécula em fase gasosa. Os cálculos para a espécie correspondente +CCl3 revelam que este tipo de reação não é favorável para os cátions metílicos substituídos e experimentalmente reações semelhantes não são observadas para +CCl3. No caso dos íons ClnSi(OH)3-n+ (n=1, 2 e 3), oriundos das reações de hidrólise do íon +SiCl3, observou-se reações secundárias de condensação com SiCl4 que levam a formação de espécies iônicas com ligações tipo siloxanas (-Si-O-Si-). Os cálculos teóricos sugerem que estas reações se processam inicialmente através de um intermediário tipo clorônio, R1-Cl+-R2 seguida de uma transferência formal de um átomo de Cl e rearranjo para uma estrutura tipo siloxana. / Polyhalogenated silicenium ions, X3Si+ (X = F, Cl), are common fragment ions in the mass spectra of polyhalogenated silanes obtained by electron ionization. These ions are powerful electrophiles and are believed to play a role in plasma enhanced corrosion processes and plasma enhanced chemical vapour deposition processes. In this dissertation, we present some new results on the gas-phase reactivity of the +SiCl3 ion with a number of simple n electron donor bases such as water, alcohols, ammonia, amines and some &pi; electron donor bases. Ion-molecule reactions were characterized experimentally by Fourier transform ion cyclotron resonance mass spectrometry (FTICR) at pressures in the 10-8 Torr range. Reactions were followed as a function of trapping time of the ions in the cell of the spectrometer and this allowed for the identification of subsequent reactions of the primary product ions. The energy diagram and structure of the different silicenium ions were also characterized by computational chemistry using both ab initio and density functional theory methods in order to understand the mechanism of these reactions. +SiCl3 reacts rapidly in gas phase with various neutral substrates through processes similar to solvolysis in which the neutral substrate adds onto the silicenium ion followed by elimination of HCl. In some cases, complete solvolysis is observed with substitution of all three chlorine atoms. The calculations show that reactions proceed by initial addition of the electrophile onto the electron center of the neutral substrates giving rise to stable adducts. The transition state for these reactions involve a 1,3 hydrogen migration and the calculated energy for these transition states is less than the energy of the isolated reactants, a fact that is common to fast gas-phase ion-molecule reactions. Similar calculations for +CCl3 reveal similar solvolysis reactions to be energetically unfavourable, and in fact these reactions are not observed experimentally. Secondary reactions have been observed for the product ions ClnSi(OH)3-n+ (n = 1, 2 and 3), obtained from successive hydrolysis of +SiCl3, with the parent SiCl4 neutral. These secondary condensation reactions yield ionic species containing a siloxane type linkage (-Si-O-Si-). The theoretical calculations suggest that is that these secondary condensation reactions initially proceed via chloronium ion intermediate, R1-Cl+-R2 , followed by formal Cl transfer and rearrangement to a siloxane type structure.

O desenvolvimento desta tese foi direcionado ao estudo da química iônica, em fase gasosa, de alguns compostos organo-metálicos, como: Ge(OEt)4, Ti(i-Pro)4, BU3SnOMe, GeE4, GeMe4, SiMe4 e Me6Si2NH. Foram abordados vários aspectos da química iônica destes compostos desde o estudo dos seus processos de fragmentação, a reatividade de cátions e ânions derivados destes compostos, a fotodisssociação de espécies hipervalentes formadas a partir de reações de adição, e por último foram obtidos dados sobre a afinidade protônica de ânions derivados de germânio. Além disto, foram promovidas outras investigações experimentais destinadas á obtenção de informações sobre a estrutura de espécies hipervalentes e a análise de substâncias químicas desconhecidas contendo átomos de Ge. Os resultados obtidos em algumas investigações são conclusivos, e por isto em alguns casos não foi criada uma seção voltada exclusivamente para as conclusões. Mesmo assim, algumas observações podem ser destacadas. De modo geral, os alcóxidos metálicos reagem com íon fluoreto através de reações de adição-eliminação formando complexos pentacoordenados, que no caso dos derivados de germânio e titânio, absorvem radiação infravermelha de um laser de CO2, e por absorção multifotônica promovem sucessivos processos de eliminação de espécies neutras simples. O mesmo comportamento não é observado nas alquilas metálicas. Os cátions derivados destes compostos são poderosos ácidos de Lewis, e sofrem reações de adição-eliminação com diversos substratos neutros, do tipo base de Lewis. O mais surpreendente foi à observação de reações de abstração de ligantes como CH3- por alguns destes cátions, e a subseqüente formação, em alguns casos, de espécies formadas através de reações de troca de ligantes. A afinidade protônica de alguns ânions formados através da fotodissociação de espécies hipervalentes, derivadas de germânio, foi obtida por meio de reações de abstração de prótons com substratos de afinidade protônica conhecida. Foi possível caracterizar a acidez dos ácidos conjugados destes ánions como sendo próxima a das mercaptanas. / The present thesis describes the study of the gas-phase ion chemistry of a number of organometallic compounds such as Ge(OEt)4, Ti(i-Pro)4, BU3SnOMe, GeE4, GeMe4, SiMe4 and Me6Si2NH. Several aspects of the ion chemistry of these compounds were investigated including fragmentation processes in their mass spectra, reactivity of cations and anions obtained from these compounds by electron ionization, photodissociation of hypervalent species formed by nucleophilic addition, and the proton affinity of a number of germanium-containing anions. Additional experimental investigations were carried out to characterize the structure of hypervalent studies and to explore analytical applications of unknown germanium-containing substrates. The results in several cases are sufficiently conclusive such that a general section of conclusions was considered unnecessary. For example, the metal alkoxides studied in this work react with fluoride ion in the gas-phase by an addition-elimination mechanism that initially results in the formation of a pentacoordinated species. The germanium and titanium pentacoordinated species absorb readily infrared radiation from a CO2 laser and undergo successive elimination of sim pie neturals by sequential mutiphoton absorption. This behavior is not observed for the metal alkyls. Cations derived from these compounds are powerful Lewis acids and are capable of promoting addition-elimination reactions with several neutral substrates that can act as Lewis bases. The most surprising reactions have been the abstraction of methide (formally a CH3- ion) by some of these cations followed, in the case of some Si- and Ge-containing ions, by a ligand exchange reaction. The proton affinity of Ge-containing anions obtained from the photodissociation of hypervalent precursors was established using the bracketing technique by studying the proton abstraction reaction with a number of substrates of well-known proton affinities. The absolute values derived for the proton affinities of these species, and the corresponding gas-phase acidities of the conjugate acids are close to the values of similar mercaptans.

Íons polihalogenados de Si, X3Si+ (X = F, Cl), são fragmentos facilmente gerados em espectrometria de massas por ionização eletrônica de compostos de silício polihalogenados. Estes cátions possuem um elevado caráter eletrofílico e desempenham um papel importante como intermediários em processos de corrosão auxiliados por plasma utilizados na fabricação de dispositivos em microeletrônica. Esta dissertação apresenta um estudo sobre a reatividade dos íons +SiCl3, em fase gasosa, perante uma série de substratos neutros simples como água, alcoóis, amônia, aminas e algumas bases doadoras de elétrons &pi;. As reações íon-molécula em fase gasosa foram caracterizadas do ponto de vista experimental por espectrometria de massas de ressonância ciclotrônica de íons por transformada de Fourier (FTICR) a pressões da ordem de 10-8 Torr. As reações foram acompanhadas em função do tempo de reação na cela do espectrômetro, o que permitiu a elucidação de uma série de reações sequenciais. O perfil de energia das reações e as estruturas dos íons silicênios formados nestas reações foram também caracterizados por métodos de química computacional, usando métodos ab initio e métodos baseados na teoria do funcional da densidade, a fim de elucidar o mecanismo das reações. Observou-se que o cátion +SiCl3 reage rapidamente em fase gasosa com os diversos substratos neutros através de processos semelhantes a reações de solvólise que resultam na adição do neutro seguida de eliminação de HCl. Em vários dos casos, foi possível observar a solvólise total do cátion com substituição dos três átomos de cloro. Os cálculos revelam que estas reações se processam inicialmente pela adição do eletrófilo aos centros ricos em densidade eletrônica dos substratos neutros e que estes adutos são mais estáveis que os reagentes isolados. O estado de transição destas reações envolve uma migração 1,3 de um hidrogênio e a energia calculada para o estado de transição é consideravelmente menor que a energia dos reagentes, fato este comum para reações rápidas íon/molécula em fase gasosa. Os cálculos para a espécie correspondente +CCl3 revelam que este tipo de reação não é favorável para os cátions metílicos substituídos e experimentalmente reações semelhantes não são observadas para +CCl3. No caso dos íons ClnSi(OH)3-n+ (n=1, 2 e 3), oriundos das reações de hidrólise do íon +SiCl3, observou-se reações secundárias de condensação com SiCl4 que levam a formação de espécies iônicas com ligações tipo siloxanas (-Si-O-Si-). Os cálculos teóricos sugerem que estas reações se processam inicialmente através de um intermediário tipo clorônio, R1-Cl+-R2 seguida de uma transferência formal de um átomo de Cl e rearranjo para uma estrutura tipo siloxana. / Polyhalogenated silicenium ions, X3Si+ (X = F, Cl), are common fragment ions in the mass spectra of polyhalogenated silanes obtained by electron ionization. These ions are powerful electrophiles and are believed to play a role in plasma enhanced corrosion processes and plasma enhanced chemical vapour deposition processes. In this dissertation, we present some new results on the gas-phase reactivity of the +SiCl3 ion with a number of simple n electron donor bases such as water, alcohols, ammonia, amines and some &pi; electron donor bases. Ion-molecule reactions were characterized experimentally by Fourier transform ion cyclotron resonance mass spectrometry (FTICR) at pressures in the 10-8 Torr range. Reactions were followed as a function of trapping time of the ions in the cell of the spectrometer and this allowed for the identification of subsequent reactions of the primary product ions. The energy diagram and structure of the different silicenium ions were also characterized by computational chemistry using both ab initio and density functional theory methods in order to understand the mechanism of these reactions. +SiCl3 reacts rapidly in gas phase with various neutral substrates through processes similar to solvolysis in which the neutral substrate adds onto the silicenium ion followed by elimination of HCl. In some cases, complete solvolysis is observed with substitution of all three chlorine atoms. The calculations show that reactions proceed by initial addition of the electrophile onto the electron center of the neutral substrates giving rise to stable adducts. The transition state for these reactions involve a 1,3 hydrogen migration and the calculated energy for these transition states is less than the energy of the isolated reactants, a fact that is common to fast gas-phase ion-molecule reactions. Similar calculations for +CCl3 reveal similar solvolysis reactions to be energetically unfavourable, and in fact these reactions are not observed experimentally. Secondary reactions have been observed for the product ions ClnSi(OH)3-n+ (n = 1, 2 and 3), obtained from successive hydrolysis of +SiCl3, with the parent SiCl4 neutral. These secondary condensation reactions yield ionic species containing a siloxane type linkage (-Si-O-Si-). The theoretical calculations suggest that is that these secondary condensation reactions initially proceed via chloronium ion intermediate, R1-Cl+-R2 , followed by formal Cl transfer and rearrangement to a siloxane type structure.

O desenvolvimento desta tese foi direcionado ao estudo da química iônica, em fase gasosa, de alguns compostos organo-metálicos, como: Ge(OEt)4, Ti(i-Pro)4, BU3SnOMe, GeE4, GeMe4, SiMe4 e Me6Si2NH. Foram abordados vários aspectos da química iônica destes compostos desde o estudo dos seus processos de fragmentação, a reatividade de cátions e ânions derivados destes compostos, a fotodisssociação de espécies hipervalentes formadas a partir de reações de adição, e por último foram obtidos dados sobre a afinidade protônica de ânions derivados de germânio. Além disto, foram promovidas outras investigações experimentais destinadas á obtenção de informações sobre a estrutura de espécies hipervalentes e a análise de substâncias químicas desconhecidas contendo átomos de Ge. Os resultados obtidos em algumas investigações são conclusivos, e por isto em alguns casos não foi criada uma seção voltada exclusivamente para as conclusões. Mesmo assim, algumas observações podem ser destacadas. De modo geral, os alcóxidos metálicos reagem com íon fluoreto através de reações de adição-eliminação formando complexos pentacoordenados, que no caso dos derivados de germânio e titânio, absorvem radiação infravermelha de um laser de CO2, e por absorção multifotônica promovem sucessivos processos de eliminação de espécies neutras simples. O mesmo comportamento não é observado nas alquilas metálicas. Os cátions derivados destes compostos são poderosos ácidos de Lewis, e sofrem reações de adição-eliminação com diversos substratos neutros, do tipo base de Lewis. O mais surpreendente foi à observação de reações de abstração de ligantes como CH3- por alguns destes cátions, e a subseqüente formação, em alguns casos, de espécies formadas através de reações de troca de ligantes. A afinidade protônica de alguns ânions formados através da fotodissociação de espécies hipervalentes, derivadas de germânio, foi obtida por meio de reações de abstração de prótons com substratos de afinidade protônica conhecida. Foi possível caracterizar a acidez dos ácidos conjugados destes ánions como sendo próxima a das mercaptanas. / The present thesis describes the study of the gas-phase ion chemistry of a number of organometallic compounds such as Ge(OEt)4, Ti(i-Pro)4, BU3SnOMe, GeE4, GeMe4, SiMe4 and Me6Si2NH. Several aspects of the ion chemistry of these compounds were investigated including fragmentation processes in their mass spectra, reactivity of cations and anions obtained from these compounds by electron ionization, photodissociation of hypervalent species formed by nucleophilic addition, and the proton affinity of a number of germanium-containing anions. Additional experimental investigations were carried out to characterize the structure of hypervalent studies and to explore analytical applications of unknown germanium-containing substrates. The results in several cases are sufficiently conclusive such that a general section of conclusions was considered unnecessary. For example, the metal alkoxides studied in this work react with fluoride ion in the gas-phase by an addition-elimination mechanism that initially results in the formation of a pentacoordinated species. The germanium and titanium pentacoordinated species absorb readily infrared radiation from a CO2 laser and undergo successive elimination of sim pie neturals by sequential mutiphoton absorption. This behavior is not observed for the metal alkyls. Cations derived from these compounds are powerful Lewis acids and are capable of promoting addition-elimination reactions with several neutral substrates that can act as Lewis bases. The most surprising reactions have been the abstraction of methide (formally a CH3- ion) by some of these cations followed, in the case of some Si- and Ge-containing ions, by a ligand exchange reaction. The proton affinity of Ge-containing anions obtained from the photodissociation of hypervalent precursors was established using the bracketing technique by studying the proton abstraction reaction with a number of substrates of well-known proton affinities. The absolute values derived for the proton affinities of these species, and the corresponding gas-phase acidities of the conjugate acids are close to the values of similar mercaptans.