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Indiana University-Purdue University Indianapolis (IUPUI) / Dynamic changes to the extracellular matrix (ECM) impact many cell fate pro- cesses. The ECM can experience changes in sti ness as well as changes in composi- tion in response to injury, development, and diseases. To better understand the role that these dynamic processes have on the cells residing within the environment, re- searchers have turned towards 4-dimensional (4D) hydrogel designs. These 4D hydro- gels re-capitulate not only 3-dimensional (3D) matrix architectures, but also temporal changes in the physicochemical properties. The goal of this thesis was to design a unify chemistry (i.e., Sortase A (SrtA)-mediated transpeptidation) for dynamic tun- ing hydrogel sti ness and the presence of bioactive ligands. The rst objective was to establish a tunable and cytocompatible enzymatic scheme for softening cell-laden hydrogels. Brie y, the e ects of SrtA-mediated matrix cleavage were investigated us- ing poly(ethylene glycol) (PEG)-peptide hydrogels crosslinked by SrtA-sensitive and insensitive peptides. Initially, the e ects of various parameters with respect to cat- alytic reactions of SrtA were characterized rheologically, including enzyme and sub- strate concentrations, macromer content, peptide composition, and treatment time. Gel moduli pre- and post-enzyme treatment were measured to verify SrtA-mediated hydrogel softening. The cytocompatibility of SrtA-mediated gel softening system was investigated using human mesenchymal stem cell (hMSC). Upon treatment with SrtA and an oligoglycine substrate, encapsulated hMSCs exhibited extensive spreading in comparison to those within statically sti matrices. The second objective was to es- tablish a reversible ligand exchange system utilizing SrtA-mediated transpeptidation. SrtA-sensitive pendant ligands were immobilized within PEG hydrogels, which were treated with SrtA and an oligoglycine substrate to a ord tunable removal of the pen- dant ligand. Through measurement of the liberated pendant peptide concentration, it was found that higher concentrations of SrtA or extending treatment times led to higher ligand removal e ciency. Finally, the e ect of peptide ligand removal on cell behaviors were evaluated using NIH 3T3 broblasts. Fibroblasts were culture both on and within hydrogels containing SrtA-cleavable cell adhesion peptide. After treatment, both conditions led to a decrease in broblast spreading in comparison to non-treated gels. Overall, the utility of SrtA as versatile agent for controlling the mechanical properties and the presence of biologically active components within a hydrogel system was demonstrated. These systems could be further explored with natural-based materials to better mimic the physiological environment experienced by cells.

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Methylmercury (MeHg) is a neurotoxic compound that threatens the well-being of humans and wildlife. It is formed through the methylation of inorganic mercury (HgII) under suboxic/anoxic conditions in soils, sediment and waters. The chemical speciation of HgII, including specific HgII species in aqueous and solid/adsorbed phases, plays a key role in MeHg formation. Chemical forms of HgII which have been reported to be available for uptake in methylating bacteria include neutral HgII–sulfide complexes, HgII complexes with specific low molecular mass (LMM) thiols, and nanoparticulate HgS(s). Accurate determination of the chemical speciation of HgII is thus crucial when elucidating the mechanism of MeHg formation. The concentration of HgII–LMM thiols complexes is predicted to be extremely low (sub fM range). Current analytical methods do not allow direct quantification of HgII complexes due to the very low concentration of these complexes, and therefore determination rely on thermodynamic modeling. Accurate stability constants for HgII–LMM thiols complexes and quantification of LMM thiol ligands in environments are thus required to precisely determine the concentration of such complexes. In this thesis, a novel analytical method was developed based on online pre-concentration coupled with liquid chromatography tandem mass spectrometry to determine the concentration of 16 LMM thiols (Paper I). This method was successful in detecting 8 LMM thiols in boreal wetland porewaters, with mercaptoacetic acid and cysteine being the most abundant. The total concentration of individual detected LMM thiols ranged from sub nM (LOD=0.1 nM) to 77 nM. Moreover, the stability constant (β2) for HgII complexes with 15 LMM thiols were directly determined for the first time by competing ligand exchange experiments combined with liquid chromatography ICPMS analysis (Paper II). Values of log β2 for the reaction Hg2+ + 2LMM-RS- = Hg(LMM-RS)2 ranged from 34.6 for. Based on the determined constants of Hg(LMM-RS)2 complexes and state-of-the-art constants from literature for other HgII complexes, we established comprehensive thermodynamic speciation models for MeHg and HgII in boreal wetlands (Paper III). The speciation of HgII was coupled with the HgII methylation rate constant (km) determined with different enriched Hg isotope tracers (Paper IV). There was a good correlation (R2=0.88) between the km determined by a HgII(aq) tracer added as Hg(NO3)2 with high bioavailability and a tracer where HgII was bond to thiol groups in natural organic matter (HgII-NOM(ads)) and has a lower bioavailability. The HgII(aq) tracer was consistently methylated at 5 times higher rate than the HgII-NOM(ads) tracer. A good correlation was observed between the concentration of biologically produced LMM thiols and km in the boreal wetlands. In a mesocosm study of estuarine sediment-brackish water systems, increased concentration of phytoplankton chlorophyll α due to macro nutrient additions led to an increase in HgII methylation rate of the HgII(aq) but not of the HgII-NOM(ads) tracer or ambient HgII species (Paper V). Furthermore, simulated newly deposited HgII species from atmospheric and terrestrial sources were exhibited significantly higher HgII methylation rates when compared with simulated aged sediment HgII pools. Through the development and adoption of novel analytical methods, this thesis reveals the significance of LMM thiols in Hg biogeochemistry by precise determination of HgII–LMM thiol complexes in natural environmental systems.

Investigations presented here are (a) the study of reorientational dynamics and internal rotation in transition metal complexes by NMR relaxation experiments, and (b) the study of ligand exchange dynamics in transition metal complexes by exchange NMR experiments. The phenyl ring rotation in Ru3(CO)9(μ3-CO)(μ3-NPh) and Re(Co)2(CO)10(μ3- CPh) was monitored by 13C NMR relaxation experiments to probe intramolecular electronic and/or steric interactions. It was found that the rotation is relatively free in the first complex, but is restrained in the second one. The steric interactions in the complexes were ascertained by the measurement of the closest approach intramolecular distances. The rotational energy barriers in the two complexes were also calculated by using both the Extended Hiickel and Fenske-Hall methods. The study suggests that the barrier is due mainly to the steric interactions. The exchange NMR study revealed two carbonyl exchange processes in both Ru3(CO)9(μ3-CO)(μ3-NPh) and Ru3(CO)8(PPh3)(μ3-CO)(μ3-NPh). The lower energy process is a tripodal rotation of the terminal carbonyls. The higher energy process, resulting in the exchange between the equatorial and bridging carbonyls, but not between the axial and bridging carbonyls, involves the concerted formation of edge-bridging μ2-CO moieties. The effect of the PPh3 ligand on the carbonyl exchange rates has been discussed. A combination of relaxation and exchange NMR found that PPh3 ligand rotation about the Ru-P bond is slow on the exchange NMR time scale and the phenyl rotation about the P-Cipso bond is fast on the exchange NMR time scale but is slow on the NMR relaxation time scale.

No / Spheric and anisotropic gold nanoparticles (GNPs) such as rods, stars or nanoprism prepared using hexadecyltrimethyl ammonium bromide (CTAB) as the stabilising agent have received a great deal of interest in the last years. The literature procedures exploited lead to GNPs in aqueous solution. We herein describe a fast, efficient, and cheap method to transfer particles of different shapes from water into toluene solution via ligand exchange (CTAB to dodecanethiol), which was mediated by acetone as a cosolvent. Absorption spectra and TEM-pictures before and after the transfer revealed that the particles survived the transfer intact and without change in shape.

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Mechanisms of adsorption of alkaline copper quat (ACQ) components in wood were investigated with emphasis on: copper chemisorption, copper physisorption, and quat adsorption. Various factors were investigated that could affect the adsorption of individual ACQ components in red pine wood. Copper chemisorption in wood was affected by ligand types coordinating with Cu and the stability of the Cu-ligand complexes in solution. For Cu-monoethanolamine (Cu-Mea) system, the prevailing active solvent species at the solution pH, [Cu(Mea)2-H]+ complexes with wood acid sites and loses one Mea molecule through a ligand exchange reaction. The amount of adsorbed Cu was closely related to the cation exchange capacity of wood. An increase in Mea/Cu ratio increased the proportion of the uncharged Cu-Mea complex and resulted in decreased Cu chemisorption in wood. Copper precipitation is also an important Cu fixation mechanisms of Cu-amine treated wood. X-ray diffraction analysis revealed that in vitro precipitated Cu was a mixture of copper carbonates (azurite and malachite) and possibly Cu2O. Higher concentration Cu-amine solutions retarded the Cu precipitation to a lower pH because of higher free amine in the preservative-wood system. The changes in zeta potential of wood in relationship to the quaternary ammonium (alkyldimethylbenzylammonium chloride: ADBAC) adsorption isotherm showed two different adsorption mechanisms for quat in wood: ion exchange reaction at low concentration and additional aggregation form of adsorption by hydrophobic interaction at high concentration. Because of the aggregation effect, when wood was treated with ACQ, high amounts of ADBAC were concentrated near the surface creating a steep gradient with depth. This aggregated ADBAC was easily leached out while the ion exchanged ADBAC had high leaching resistance. Free Mea and Cu of ACQ components appeared to compete with ADBAC for the same bonding sites in wood.