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Le devenir des hydrocarbures (HC) dans les environnements hypersalins constitue une problématique environnementale majeure. Ce travail pour objectifs (1) d’évaluer l’impact d’une pollution pétrolière sur les communautés microbiennes d’un milieu hypersalin, (2) de déterminer comment les archées hydrocarbonoclastes accèdent aux HC et, (3) de déterminer si la biodégradation est possible en conditions anaérobies dans ces environnements hypersalés. Nous avons démontré qu’une biodégradation modérée du pétrole est possible en milieu hypersalin environ 10 % de la fraction aliphatique du pétrole sont biodégradé. Une disparition progressive des composés aromatiques les plus légers est également observée, liée aux processus abiotiques. La dynamique des communautés procaryotiques montre un changement dans la structure de la communauté bactérienne autochtone des saumures. Une résistance à la contamination pétrolière a en revanche été observée pour les communautés archéennes des saumures. Dans une deuxième partie du travail, nous avons pu montrer, à l’aide d’une souche d’archée hyperhalophile modèle (Haloferax volcanii MSCN14), que les archées hydrocarbonoclastes de ces environnements mettent en oeuvre plusieurs mécanismes leur permettant d’augmenter la biodisponibilité des HC. Dans une dernière partie des travaux, nous avons testé les capacités d’une souche modèle (Hfx. volcanii MSNC 16) à dégrader les HC en anaérobiose. Si Hfx. volcanii MSNC16 est bien capable d’utiliser le fumarate comme accepteur terminal d’électrons, elle n’est en revanche pas capable de dégrader l’alcane testé (heptadécane) en absence d’oxygène. / The fate of hydrocarbons (HC) in hypersaline environments is an important environmental issue. This work aimed to (1) assess the impact of oil pollution on microbial communities of a hypersaline environment, (2) determine how hydrocarbonoclastic archaea can access to HC and (3) whether biodegradation is possible in these hypersaline environments in the absence of oxygen. We have shown that moderate oil biodegradation is possible under hypersaline conditions. In these conditions close to natural ones, about 10% of the aliphatic hydrocarbons were biodegrade. A gradual disappearance of the lighter aromatic compounds was also observed, but these losses were mainly due to abiotic processes. The monitoring of prokaryotic communities based on molecular fingerprints showed a change in the structure of the indigenous bacterial community. On the contrary, resistance to oil contamination was observed among the indigenous archaeal communities of brines. In the second part of this work, laboratory cultures of a hyperhalophilic archaeal strain (Haloferax volcanii MSCN14), allowed to demonstrate that, in hypersaline environments, hydrocarbonoclastic archaea use several strategies to increase the bioavailability of HC. Indeed, strain MSCN14 was capable of producing one or several biosurfactants during growth on different HC, and was adhering to the surface of the HC. In the last part of this work, we tested the capacities of a model archaeal strain (Hfx. volcanii MSNC 16) to degrade HC anaerobically. If Hfx. volcanii MSNC16 was able to use fumarate as a terminal electron acceptor, it was, however, not capable of degrading heptadecane in the absence of oxygen.

<p>This thesis examines the role of dissolved inorganic nutrients in generating changes in phytoplankton community and pigment composition and if such changes can affect the production of the antioxidant astaxanthin in the ecosystem via pelagic copepods. The background of my studies is the possible relationship between eutrophication and a reproductive disturbance in Baltic populations of Atlantic salmon (M74), which is associated with astaxanthin and thiamine deficiencies and oxidative stress. In the southern Baltic Sea, changes in nutrient loads correlate with observed trends of flagellates replacing diatoms in the phytoplankton. Copepods are the main producers of astaxanthin and a major link between phytoplankton and higher trophic levels. In laboratory and field experiments in the Baltic Sea proper and the Norwegian Sea, I show that astaxanthin synthesis in copepods is fast and depends on pigment composition of the phytoplankton diet. Among single-species diets, a diatom and a green algal cyst yielded the highest astaxanthin levels in copepods, and another diatom species, a green alga and a cyanobacterium the lowest. In nutrient-generated phytoplankton blooms in mesocosms, copepods grazing on diverse communities dominated by weakly silicified diatoms produced more astaxanthin compared with copepods grazing on communities dominated by strongly silicified diatoms. This suggests that diatoms invested in defence mechanisms and escaped grazing at surplus Si. A nutrient-starved diatom culture subjected to intraspecific competition exhibited decreased pigment levels, increased thiamine levels and increased oxidative stress. </p><p>My results suggest that diatoms are beneficial for astaxanthin and thiamine production compared to other phytoplankton groups, but not under all circumstances. Copepod growth and development also responded to inorganic nutrient availability and affected total astaxanthin production per volume seawater, with highest production when the copepods grazed on diatoms. From an ecosystem perspective, increased N and P loads seem to promote high astaxanthin production, but not when diatoms disappear completely.</p>

This thesis examines the role of dissolved inorganic nutrients in generating changes in phytoplankton community and pigment composition and if such changes can affect the production of the antioxidant astaxanthin in the ecosystem via pelagic copepods. The background of my studies is the possible relationship between eutrophication and a reproductive disturbance in Baltic populations of Atlantic salmon (M74), which is associated with astaxanthin and thiamine deficiencies and oxidative stress. In the southern Baltic Sea, changes in nutrient loads correlate with observed trends of flagellates replacing diatoms in the phytoplankton. Copepods are the main producers of astaxanthin and a major link between phytoplankton and higher trophic levels. In laboratory and field experiments in the Baltic Sea proper and the Norwegian Sea, I show that astaxanthin synthesis in copepods is fast and depends on pigment composition of the phytoplankton diet. Among single-species diets, a diatom and a green algal cyst yielded the highest astaxanthin levels in copepods, and another diatom species, a green alga and a cyanobacterium the lowest. In nutrient-generated phytoplankton blooms in mesocosms, copepods grazing on diverse communities dominated by weakly silicified diatoms produced more astaxanthin compared with copepods grazing on communities dominated by strongly silicified diatoms. This suggests that diatoms invested in defence mechanisms and escaped grazing at surplus Si. A nutrient-starved diatom culture subjected to intraspecific competition exhibited decreased pigment levels, increased thiamine levels and increased oxidative stress. My results suggest that diatoms are beneficial for astaxanthin and thiamine production compared to other phytoplankton groups, but not under all circumstances. Copepod growth and development also responded to inorganic nutrient availability and affected total astaxanthin production per volume seawater, with highest production when the copepods grazed on diatoms. From an ecosystem perspective, increased N and P loads seem to promote high astaxanthin production, but not when diatoms disappear completely.

Made available in DSpace on 2016-06-02T19:28:57Z (GMT). No. of bitstreams: 1 TeseMVR.pdf: 1800586 bytes, checksum: c44cb463d61ffeb5394f543684f66e59 (MD5) Previous issue date: 2003-06-24 / Concern with the effect of oil spills in coastal regions resulting from the production, refining and transport of this product has been one of the priorities of the institutions working with this sector. Consequently, there is a large demand for research on the impacts of by accidents on the environment and, particularly, on natural communities. In the present study, a mesocosm experiment was used to evaluate the effects of a mixture of light Arabian and Russian oil with the chemical dispersant Corexit® 9500, over a coastal plankton community. The experiment was carried out in Rio de Janeiro and lasted 25 consecutive days. Three replicates were used as control, with only seawater, three were treated with 800 mL of petroleum and the other three were treated with the mixture 800 mL of petroleum and 80 mL of dispersant. The chemical alterations in the water were striking, especially the rise in the concentration of organic compounds. The results demonstrated a severe reduction of phytoplankton density, as a result of the addition of oil. There was also a change in the composition of the organism groups, with alteration of dominance of diatoms to phytoflagelates. Similar effect was found for the zooplankton. Both the oil and its mixture with dispersant resulted in a reduction of population densities and changes, or disappearance, of some components. Meroplanktonic organisms had a higher sensitivity to the acute effects of the oil and oil-dispersant mixture than holoplanktonic organisms. Copepods were resistant to the effects of oil and oil-dispersant mixture. Among the herbivores, Acartia lilljeborgi had greater resistance to the acute toxic effect of oil, whereas Pseudodiaptomus acutus was more resistant to the chronic effects of both oil and the mixture. Among carnivores, Oithona hebes appeared as a resistant species to both acute and chronical effects. Mesocosms were shown to be useful for investigating the effects of oil spills on marine environments since standardized laboratory tests with algae and invertebrate test-organisms corroborated the field findings. / A avaliação dos efeitos de derrames de petróleo nas regiões costeiras decorrentes das atividades de produção, refinamento ou transporte deste produto tem sido uma das prioridades das instituições ligadas a este setor e há uma demanda muito grande de pesquisas sobre os impactos ocasionados por estes sobre o ambiente e as comunidades naturais, em particular. No presente estudo a experimentação em mesocosmos foi utilizada para avaliar os efeitos do derrame do petróleo ARLE/URAL e deste tratado com o dispersante químico Corexit® 9500, sobre uma comunidade planctônica costeira. O experimento foi realizado no Rio de Janeiro, Brasil e teve a duração de 25 dias consecutivos (19/06 a 13/07/2002). Os tratamentos foram feitos em triplicata com um volume aproximado de 1,7m3 de água do mar em cada unidade. Foram utilizadas três réplicas como controle, contendo apenas água do mar, três réplicas foram tratadas com 800 mL de petróleo e três outras réplicas foram tratadas com a mistura de 800 mL de petróleo e 80 mL de dispersante. As alterações químicas na água foram marcantes, principalmente em relação ao aumento na concentração dos compostos orgânicos. Os resultados evidenciaram uma redução severa na densidade do fitoplâncton, em decorrência da adição do óleo ou da mistura de óleo e dispersante. Houve também uma mudança na composição dos grupos, com alteração da dominância de diatomáceas para fitoflagelados. Em relação aos grupos zooplanctônicos também foi observado um efeito mais acentuado no tratamento com petróleo e dispersante. Os organismos meroplanctônicos foram mais sensíveis ao petróleo do que os holoplanctônicos. Os copépodes foram dominantes, em todos os tratamentos. A espécie herbívora Acartia lilljeborgi foi mais resistente ao efeito agudo do petróleo, enquanto Pseudodiaptomus acutus foi mais resistente ao efeito crônico Entre os Copepoda carnívoros Oithona hebes foi a espécie mais resistente, tanto ao impacto agudo quanto ao impacto crônico. Os mesocosmos são adequados para a avaliação dos efeitos do derrame de petróleo ou da mistura de petróleo e dispersante, como corroborado pelos estudos de toxicidade com algas e organismos-teste invertebrados, que corroboraram os efeitos observados em campo. A utilização de dispersante químico na etapa de remediação após os derrames necessita ser reavaliada tendo em vista os resultados deste trabalho que indicam que a mistura petróleodispersante é ainda mais tóxica do que o petróleo sozinho.

Made available in DSpace on 2014-12-17T14:01:57Z (GMT). No. of bitstreams: 1 RosembergFM.pdf: 688143 bytes, checksum: b1661c0d65a3b582ed47216926346188 (MD5) Previous issue date: 2008-06-02 / Coordena??o de Aperfei?oamento de Pessoal de N?vel Superior / ?The major aim of this study was to test the hypothesis that the introduction of the Nile tilapia (Oreochromis niloticus) and the enrichment with nutrients (N and P) interact synergistically to change the structure of plankton communities, increase phytoplankton biomass and decrease water transparency of a semi-arid tropical reservoir. One field experiment was performed during five weeks in twenty enclosures (8m3) to where four treatments were randomly allocated: with tilapia addition (T), with nutrients addition (NP), with tilapia and nutrients addition (T+NP) and a control treatment with no tilapia or nutrients addition (C). A two-way repeated measures ANOVA was done to test for time (t), tilapia (T) and nutrient (NP) effects and their interaction on water transparency, total phosphorus, total nitrogen, phytoplankton and zooplankton. The results show that there was no effect of nutrient addition on these variables but significant fish effects on the biomass of total zooplankton, nauplii, rotifers, cladocerans and calanoid copepods, on the biovolume of Bacillariophyta, Zygnemaphyceae and large algae (GALD ? 50 ?m) and on Secchi depth. In addition, we found significant interaction effects between tilapia and nutrients on Secchi depth and rotifers. Overall, tilapia decreased the biomass of most zooplankton taxa and large algae (diatoms) and decreased the water transparency while nutrient enrichment increased the biomass of zooplankton (rotifers) but only in the absence of tilapia. In conclusion, the influence of fish on the reservoir plankton community and water transparency was greater than that of nutrient loading. This finding suggests that biomanipulation should be a greater priority in the restoration of eutrophic reservoirs in tropical semi-arid regions / ?O principal objetivo deste estudo foi testar a hip?tese de que a introdu??o da til?pia do Nilo (Oreochromis niloticus) e o enriquecimento por nutrientes (N e P) interagem sinergicamente ocasionando mudan?as na estrutura da comunidade planct?nica atrav?s do aumento da biomassa fitoplanct?nica e diminui??o da transpar?ncia da ?gua em um reservat?rio tropical do semi-?rido. Um experimento de campo foi realizado durante cinco semanas em vinte mesocosmos (8m3) nos quais quatro tratamentos foram alocados aleatoriamente: com adi??o de til?pia (T), com adi??o de nutrientes (NP), com adi??o de til?pia e nutrientes (T+NP) e um tratamento controle sem adi??o de til?pia ou nutrientes (C). Uma ANOVA bifatorial com medidas repetidas foi realizada para testar os efeitos do tempo, da til?pia (T) e dos nutrientes (NP) e seus efeitos de intera??o sobre a transpar?ncia da ?gua, f?sforo total, fitopl?ncton e zoopl?ncton. Os resultados mostraram que n?o houve efeito da adi??o de nutrientes sobre essas vari?veis mas houve um efeito significativo dos peixes sobre a biomassa do zoopl?ncton total, n?uplios, rot?feros, clad?ceros e cop?podos calan?ides, sobre o biovolume de Bacillariophyta, Zygnemaphyceae e algas de grande porte (GALD ? 50?m) e sobre a profundidade do disco de Secchi. Al?m disso, foi encontrado um efeito significativo da intera??o entre as til?pias e nutrientes sobre a profundidade do disco de Secchi e tamb?m sobre a biomassa de rot?feros. As til?pias diminu?ram a biomassa da maioria dos taxa zooplanct?nicos, das algas de grande porte e diminu?ram a transpar?ncia da ?gua, enquanto que o enriquecimento por nutrientes aumentou a biomassa do zoopl?ncton (rotiferos) mas somente na aus?ncia das til?pias. Portanto podemos concluir que a influ?ncia dos peixes sobre a comunidade planct?nica do reservat?rio e a transpar?ncia da ?gua foi maior do que o aporte por nutrientes, sugerindo assim que a biomanipula??o deve ter maior prioridade na restaura??o de reservat?rios eutrofizados em regi?es semi-?ridas tropicais

Mon travail de thèse s'est attaché à étudier les effets de la diversité des litières et de la macrofaune du sol sur les communautés microbienne, sous contrainte hydrique. Dans une première partie, le suivi des communautés microbiennes associées aux feuilles de la litière (feuilles mortes) et de la phyllosphère (feuilles vivantes), pendant un an en conditions naturelles, a montré des différences marquées selon l'état physiologique de la feuille, l'importance de l'espèce végétale hôte sur les communautés microbiennes ainsi que l'évolution des communautés au cours de l'année. Une deuxième partie présente les résultats d'une expérience de décomposition en microcosmes selon deux modalités d'humidité, un gradient de dissimilarité fonctionnelle des espèces de litière, et la présence/absence d'une macrofaune détritivore. Nos résultats confortent l'importance de l'espèce végétale sur les communautés microbiennes et montrent que la présence de détritivores favorise la diversité microbienne. Enfin, une dernière partie évalue l'impact d'une diminution des précipitations et de la diversité des litières sur les communautés microbiennes lors d'une expérience de décomposition d'un an in situ, à l'aide de dispositifs d'exclusion de pluie. La composition des mélanges de litières a une influence plus marquée sur les communautés microbiennes que la baisse des précipitations. En conclusion, les résultats de mes travaux ont tendance à minorer l'effet d'une diminution des précipitations sur les communautés microbiennes, mais soulignent la sensibilité des interactions entre communauté végétale, macrofaune et microorganismes face au changement climatique. / My PhD work focused on studying the effects of litter diversity and soil macrofauna on microbial communities under water stress. In the first part, the monitoring of microbial communities associated with leaf litter (dead leaves) and phyllosphere (living leaves) for one year under natural conditions, showed marked differences depending on the physiological state of leaves, the importance of the host plant species on microbial communities and the changes of communities during the year. A second part presents the results of a microcosms decomposition experience under two humidity conditions, a functional dissimilarity gradient of litter species and the presence / absence of a detritivorous macrofauna. Our results reinforce the importance of the plant species on microbial communities and show that the presence of scavengers encourages microbial diversity. A final section assesses the impact of a decrease in precipitation and litter diversity on microbial communities in an in situ decomposition experiment during one year, using rain excluder devices . The composition of litter mixtures has a stronger influence on the microbial communities than lower rainfall. In conclusion, the results of my work tend to underestimate the effect of a decrease in precipitation on microbial communities, but emphasize the sensitivity of the interactions between plant community, macro- and micro-organisms to climate change.

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Aquesta tesi tracta sobre l'efecte de la contaminació per cru de petroli sobre l'ecosistema costaner mediterrani i sobre el paper fonamental dels sediments marins en la regulació i el manteniment dels processos biogeoquímics. L'estudi presta especial atenció a les comunitats bacterianes reductores de sulfat i la seva implicació en la degradació de contaminants orgànics. La diversitat, abundància i fisiologia dels bacteris reductors de sulfat que habiten el sediment arenós del nord de Mallorca (Illes Balears), van ser analitzades mitjançant un enfocament polifàsic, basat en la combinació d'experiments in situ i in vitro, biologia molecular clàssica i d’última generació, cultius i determinació d'activitats metabòliques. Els resultats obtinguts durant aquesta tesi demostren que el sediment mediterrani alberga una microbiota autòctona que podria prosperar després d'un vessament de cru de petroli i el paper de la qual podria ser crucial per a la transformació i l'eliminació de compostos orgànics xenobiòtics en aquest ambient. / Esta tesis trata sobre el efecto de la contaminación por crudo de petróleo en el ecosistema costero mediterráneo y sobre el papel fundamental de los sedimentos marinos en la regulación y el mantenimiento de los procesos biogeoquímicos. El estudio presta especial atención a las comunidades bacterianas reductoras de sulfato y a su implicación en la degradación de contaminantes orgánicos. La diversidad, abundancia y fisiología de las bacterias reductoras de sulfato que habitan el sedimento arenoso del norte de Mallorca (Islas Baleares), fueron analizadas mediante un enfoque polifásico, basado en la combinación de experimentos in situ e in vitro, biología molecular clásica y de última generación, cultivos y determinación de actividades metabólicas. Los resultados obtenidos durante esta tesis demuestran que el sedimento mediterráneo alberga una microbiota autóctona que podría prosperar después de un derrame de crudo de petróleo y cuyo papel podría ser crucial para la transformación y la eliminación de compuestos orgánicos xenobióticos en este ambiente. / This thesis discusses the fate and behave of crude oil contamination in the Mediterranean coastal ecosystem, and the essential role of the marine sediments in the regulation and maintenance of biogeochemical processes. The study pays particular attention to the role of sulphate reducing bacterial communities in the degradation of organic matter and pollutants entering the Mediterranean environment. A polyphasic approach based in the combination of in situ and in vitro experiments, next generation and classical molecular biology, cultivation, and the determination of metabolic activities, provided first insights into the diversity, abundance and physiology of sulphate reducing bacteria inhabiting the undisturbed sandy sediment at the north of Mallorca (Balearic Islands). The results obtained during the thesis demonstrate that the undisturbed Mediterranean sediment harbours an autochthonous microbiota that could prosper after a crude oil spill and which role might be crucial for the transformation and removal of hazardous organic compounds in this environment.