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The rational design and construction of Metal-Organic Frameworks (MOFs) with intricate structural complexity are of prime importance in reticular chemistry. However, the design of intricate structures that can practically be synthesized is very difficult, and the suitable targeted intricate nets are still unexplored. Evidently, it is of great value to build the fundamental theory for the design of intricate structures. This dissertation is focused on the exploration of cutting-edge design methodologies in reticular chemistry. This research shows the design and synthesis of several MOF platforms (hex, fcu, gea and the) based on rare earth polynuclear clusters. Furthermore, this research unveils the latest addition, named merged nets approach, to the design toolbox in reticular chemistry for the rational design and construction of intricate mixed-linker MOFs. In essence, a valuable net for design enclosing two edges is rationally generated by merging two edge-transitive nets, spn and hxg. The resultant merged net, named sph net, offers potential for the deliberate design and construction of highly symmetric isoreticular intricate mixed-linker MOFs, sph-MOF-1 to 4, which represent the first examples of MOFs where the underlying net is merged from two 3-periodic edge-transitive nets. Furthermore, the underlying principle of the merged net approach, the fundamental merged net equation, and two key parameters are disclosed. Also, we discovered three analysis methods to check and validate corresponding signature nets in an edge-transitive net. Based on these analysis methods, a signature map of all edge-transitive nets was established. This map showing the systematic relationship among edge-transitive nets will help the material chemist to comprehend more about the underlying nets in reticular chemistry. Based on the revealed map, we systematically described the nine types of merging combination and 140 merged nets based on two edge-transitive nets. Among these enumerated nets, only 18 of them was shown on the RCSR database before. These enumerated merged nets significantly increased the designable targets in reticular chemistry. Using an example of enumerated sub net, we show how this approach can be utilized to design and synthesis mixed-linker porous materials based on the intricate sub-MOF platform, which presents one of the most intricate MOF structures synthesized by design.

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Production of efficiently synthesizable, strongly associating crown ether-based cryptands is desired for pseudorotaxane complexation of bipyridinium guests to produce suprapolymers and supramolecularly-linked block copolymers. Cryptands based on bis(meta-phenylene)-32-crown-10 (BMP32C10) were synthesized. The functionality of phenylenemethanol-BMP32C10 cryptand III-3 (Ka = 2.0 x 104 M-1) did not negatively affect binding strength, although the strength of complexation is marginal to achieve the desired suprapolymers. The cryptand dimethylpyridyl-BMP32C10 IV-2 was synthesized in an attempt to improve over the binding ability of the pyridyl-BMP32C10 cryptand IV-1; instead, interesting host design insights were discovered as binding strengths were reduced over 1000-fold. The crystal structure of IV-2 shows acyl-aryl conjugation which limits the host's ability to accept guests. Synthesis of larger cis-di(carbomethoxybenzo)-3n-crown-n crown ethers was explored using the high concentration, template technique previously reported for cDB24C8 diester. cDB30C10 diester (V-1c) was produced in 93% yield; the desired pyridyl-cDB30C10 cryptand V-12 binds paraquat strongly (Ka = 1-2x105 M-1) and diquat stronger than any other host (Ka = 1.9x106 M-1), both in 1:1 fashions; association constants were measured by ITC. X-ray crystallography of the complexes shows the cryptand's para arm is too far away to interact with paraquat and the host has numerous bifurcated interactions with diquat, explaining the difference in binding strengths. Syntheses of the regioisomers of cDB27C9 diester was also explored; the cyclization yields (cDB27C9S, VI-2: 59% and cDB27C9L, VI-3: 44%) are lower, likely due to poor attack angles due to mismatched arm length in cyclization, than the equivalent length ethyleneoxy-armed cDB24C8 and cDB30C10. Modeling of the cryptand isomers, pyridyl-cDB27C9S and pyridyl-cDB27C9L, showed that the former should improve para arm interaction with paraquat, but should be sterically hindered for diquat and the latter should have a highly flexible, poorly preorganized interaction with either type of guest. ITC, MS, and crystallography data supported the predictions. Derivatization of the pyridyl-cDB30C10 cryptand V-12 was explored using chelidamic acid (VII-1). Schemes yielding alcohol, alkyl halide, alkyne, and TEMPO functionality were followed, but failed. Currently, functionalized cryptand derivatives have not been achieved, future directions are proposed. / Ph. D.

Yes / The association constants for formation of 1 : 1 complexes between a H-bond donor, 1-naphthol, and a diverse range of charged and neutral H-bond acceptors have been measured using UV/vis absorption and fluorescence emission titrations. The performance of 1-naphthol as a dual colorimetric and fluorescent molecular recognition probe for determining the H-bond acceptor (HBA) parameters of charged and neutral solutes has been investigated in three solvents. The data were employed to establish self-consistent H-bond acceptor parameters (β) for benzoate, azide, chloride, thiocyanate anions, a series of phosphine oxides, phosphate ester, sulfoxide and a tertiary amide. The results demonstrate both the transferability of H-bond parameters between different solvents and the utility of the naphthol-based dual molecular recognition probe to exploit orthogonal spectroscopic techniques to determine the HBA properties of neutral and charged solutes. The benzoate anion is the strongest HBA studied with a β parameter of 15.4, and the neutral tertiary amide is the weakest H-bond acceptor investigated with a β parameter of 8.5. The H-bond acceptor strength of the azide anion is higher than that of chloride (12.8 and 12.2 respectively), and the thiocyanate anion has a β value of 10.8 and thus is a significantly weaker H-bond acceptor than both the azide and chloride anions. / Supported by the ESPRC.

Ce travail s'inscrit dans le cadre de la chimie supramoléculaire, domaine s'intéressant à l'étude d'édifices moléculaires liés par des interactions non-covalentes, fréquemment rencontrés dans le monde du vivant. Afin de mieux comprendre les phénomènes de complexation, de nombreux récepteurs moléculaires synthétiques ont été développés depuis ces cinquante dernières années. Dans le cadre de la reconnaissance moléculaire, les calix[6]arènes s'avèrent être des plateformes idéales puisqu'ils sont aisément fonctionnalisables et possèdent une cavité hydrophobe propice à l'inclusion de petites molécules organiques. D'ailleurs de nombreux récepteurs calix[6]aréniques ont déjà été développés et ont été étudiés pour leur aptitude à complexer des molécules neutres, des anions, des paires d'ions ou des ions métalliques. Cependant, ils souffrent de certaines limitations puisqu'ils ne sont pas hydrosolubles et sont difficilement post-fonctionnalisables limitant de ce fait leur applicabilité. Nous nous sommes donc intéressés à la synthèse de récepteurs calix[6]aréniques fonctionnalisés ainsi qu'à l'étude de leurs propriétés réceptrices vis-à-vis d'entités chargées ou de molécules neutres. Les études de ces systèmes ont été réalisées essentiellement par spectroscopie de Résonance Magnétique Nucléaire (RMN).<p>Dans le cadre de ce travail, des récepteurs ditopiques mono- et trisfonctionnalisés de type calix[6]cryptamide ont tout d'abord été développés. Ces récepteurs présentent un motif trenamide qui constitue un second site de reconnaissance, distinct mais proche du premier formé par la cavité calix[6]arénique. Ces récepteurs se sont révélés capables de complexer les molécules neutres polaires ainsi que des entités chargées avec une grande sélectivité en milieu aprotique mais également en présence d'un solvant protique. Le chapeau trenamide étant relativement contraint et bien préorganisé, il assure un fort effet chélate et permet une sélectivité de taille pour l'anion fluorure. La proximité des deux sites de reconnaissance ainsi que la sélectivité pour l'anion fluorure permettent à ces récepteurs de reconnaître des ammoniums sous forme de paires d'ions de contact uniquement avec le fluorure comme partenaire anionique. Les résultats obtenus ont démontré que l'introduction de fonctionnalisations soit au niveau du chapeau trenamide, à proximité du site de reconnaissance, soit au niveau du petit col du calix[6]arène n'inhibait pas les propriétés de complexation de ces récepteurs. Les premiers essais d'introduction de groupes hydrosolubilisants ont alors été réalisés et se sont révélés très prometteurs. En effet, l'introduction de groupements PEG sur un calix[6]cryptamide trisfonctionnalisé a permis de démontrer l'aptitude de ce récepteur à complexer des molécules neutres en milieu aqueux (CD3OD/D2O).<p>Dans un second temps, des récepteurs mono- et trisfonctionnalisés de type calix[6]tren ont été développés. Les études préliminaires réalisées ont permis de mettre en évidence que, comme le calix[6]tren non fonctionnalisé, ces récepteurs étaient capable de complexer de petites molécules organiques lorsqu'ils sont polarisés, soit sous leur forme per-protonnée soit sous la forme d'un complexe métallique (Zn2+ ou Cun+). <p><p>L'ensemble de ces travaux a ainsi permis de valider la stratégie de synthèse visant à introduire des bras fonctionnels sur des récepteurs ditopiques calix[6]aréniques et de démontrer que ces nouveaux récepteurs fonctionnalisés conservaient des propriétés de reconnaissance. Ces travaux permettent donc d'envisager de multiples applications pour ce type de récepteurs.<p>This work falls within the field of supramolecular chemistry, a field concerned with the study of molecular structures linked by non-covalent interactions. Such weak interactions are frequently encountered in the living world and in particular in molecular recognition processes. In order to better understand and exploit these recognition processes, many synthetic molecular receptors have been developed over the last fifty years. In this regard, calix[6]arenes have proved to be ideal platforms because they can be easily functionalized and they possess a hydrophobic cavity suitable for the inclusion of small organic molecules. Hence, many calix[6]arene based receptors have been studied for their ability to complex neutral molecules, anions, ion pairs or metal ions. However, most of these receptors suffer from major limitations that limit their applicability: they are not water soluble and hardly post-functionalizable. In the frame of this thesis, we were therefore interested in the synthesis of functionalized calix[6]arene based receptors and in the study of their host-guest properties toward charged species or neutral molecules. Studies of these host-guest systems have been carried out mainly by Nuclear Magnetic Resonance spectroscopy (NMR).<p><p>First, mono- and trisfunctionalized ditopic receptors based on a calix[6]cryptamide skeleton were synthesized. These receptors possess two binding sites in close proximity: a trenamide subunit and the calix[6]arene cavity. They have proved to be capable of complexing neutral polar molecules as well as charged species with high selectivity in aprotic solvents but also in a protic environment. The trenamide cap being relatively constrained and well pre-organized, it provides a strong chelate effect and allows a selectivity of size for the fluoride anion. Remarkably, the proximity of the two recognition sites allow these receptors to recognize ammonium ions in the form of contact ion pairs but only with a fluoride anion as the partner. The results have shown that the introduction of functionalizations at the trenamide cap or at the narrow rim of the calix[6]arene do not inhibit the complexation properties of these receptors. First attempts in order to introduce water-solubilizing groups have been undertaken and promising results have been obtained. Indeed, the introduction of PEG groups on a trisfunctionalized calix[6]cryptamide has led to a receptor able to complex neutral molecules in an aqueous environment (CD3OD/D2O).<p><p>In a second step, mono- and trisfunctionalized receptors derived from calix[6]tren have been synthesized. Preliminary studies have highlighted that, similarly to the parent calix[6]tren, these receptors are able to complex small organic molecules when they are polarized either in their per-protonated form or in the form of a metal complex (Zn2+ or Cun+).<p><p>All this work validates the synthetic strategy that consists of introducing functional arms on ditopic calix[6]arene based receptors and opens new perspectives for the elaboration and study of molecular receptors in an aqueous environment. <p> / Doctorat en Sciences / info:eu-repo/semantics/nonPublished

In the last 20 years there has been a number of synthetic and natural product based molecular replicators published in the literature. The majority of these systems have focused on the minimal model with only a few examples of cross-catalytic or reciprocal replication. Of the cross-catalytic systems investigated the majority focus around the use of natural products, oligonucleotides, peptides etc. This thesis will investigate the design, synthesis and kinetic analysis of both synthetic minimal and reciprocal replicating systems, and how these two forms of replication interact in a complex hypercyclic network. Chapter 1 introduces key concepts such as molecular recognition, intramolecularity/ enzyme kinetic, bisubstrate systems and the work conducted into replication systems to date. Chapter 2 describes the design, synthesis and kinetic analysis of a reciprocal replicating system, based on Diels-Alder and 1,3-dipolar cycloadditions, before going on to discuss what we have learned and how this system can be improved. Chapter 3 focuses on the design, synthesis and kinetic analysis of a replicating network (minimal and reciprocal replication), based on 1,3-dipolar cycloadditions. Initial individual systems are examined in isolation to determine their behavior and nature. After which the systems are combined to observe how each species interacts in a potential complex hypercyclic network. Chapter 4 investigates the redesign of the replicating network in Chapter 3 in order to overcome the problems identified from its kinetic analysis. Chapter 5 introduces the shift in direction away from kinetically controlled replicating networks towards systems in thermodynamic equilibrium.