Hydraulic fracture conductivity in ultra-low permeability shale reservoirs is directly related to well productivity. The main goal of hydraulic fracturing in shale formations is to create a network of conductive pathways in the rock which increase the surface area of the formation that is connected to the wellbore. These highly conductive fractures significantly increase the production rates of petroleum fluids. During the process of hydraulic fracturing proppant is pumped and distributed in the fractures to keep them open after closure. Economic considerations have driven the industry to find ways to determine the optimal type, size and concentration of proppant that would enhance fracture conductivity and improve well performance. Therefore, direct laboratory conductivity measurements using real shale samples under realistic experimental conditions are needed for reliable hydraulic fracturing design optimization. A series of laboratory experiments was conducted to measure the conductivity of propped and unpropped fractures of Barnett shale using a modified API conductivity cell at room temperature for both natural fractures and induced fractures. The induced fractures were artificially created along the bedding plane to account for the effect of fracture face roughness on conductivity. The cementing material present on the surface of the natural fractures was preserved only for the initial unpropped conductivity tests. Natural proppants of difference sizes were manually placed and evenly distributed along the fracture face. The effect of proppant monolayer was also studied.

The antioxidant capacity of phenolic compounds in red wine is suggested to be responsible for their health-promoting effects. Compared to other wines, little information is available on phenolic compositions and antioxidant capacity of Australian wine. Information related to the fate of these phenolics in the body once consumed is also very limited. The overall aim of this research was to investigate the relevance of red wine consumption as a source of health-giving antioxidants in humans. The phenolic composition of wine was determined using the Folin-Ciocalteu (total phenolic), aluminium chloride (total flavonols), methyl cellulose precipitation (MCP) (total tannins), pH differential (total monomeric anthocyanins), bisulfite bleaching (total polymeric anthocyanin fractions), and liquid chromatographic (LC-MS) (individual phenolics) methods. Antioxidant activities were measured using 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2’-azino-bis-93-ethylbenzthiazoline-6-sulfonic acid (ABTS) and oxygen radical absorbance capacity (ORAC) assays. The phenolic and antioxidant data were then used to establish the relationship between these two parameters in wines from different varieties (Shiraz, Cabernet Sauvignon and Merlot) and winemaking stages (crushing, fermentations, oaking and bottling). By using an in vitro digestion model that mimics the upper gastrointestinal tract (GIT) digestion, the stability of the wine phenolics during digestion was examined. Finally, to gain a better understanding of the post-digestion absorption of wine phenolics, their permeability across Caco-2 cell monolayers was evaluated. A total of 8 monomeric anthocyanins and 17 other phenolic compounds were positively identified in the red wines using LC-MS analysis. Most of the phenolic categories showed some positive correlations with the antioxidant activities but none of the individual phenolic compounds showed a strong correlation with the total antioxidant activity of the wine, implying a combined contribution of many wine phenolics to antioxidant effects. The phenolic compositions and antioxidant activities of three of Australia’s most common red wines varieties - Shiraz, Cabernet Sauvignon and Merlot were not different from each other, possibly due to the variability within each grape cultivar. During the winemaking process, the total phenolic content and the associated antioxidant activity of the wine increased during the fermentation process, as more phenolics are being extracted from grape skin, seeds and stems into the wine. During oak and bottle ageing, the total phenolic contents were stabilised. Most of the wine phenolics were more stable under acidic conditions (pH 2 and 5.5) than neutral or alkaline conditions (pH 7.4 and 9). This may partly explain the stability of the wine phenolics subjected to the acidic (pH 2) gastric digestion and their loss following simulated pancreatic digestion (pH 7.4). In addition, sample pre-treatment procedures prior to LC-MS analysis may have removed some antioxidants in the form of degradation products and/or new polymeric compounds following the in vitro gastric and pancreatic digestion processes. The missing products appeared to be detected by both the Folin-Ciocalteu method and ORAC assay, which measured the phenolic compounds and their antioxidant activity, after the pancreatic digestion. This suggests that the instability of phenolic compounds at pH 7.4, results in the transformation of most of the oral phenolic antioxidants into more stable forms in the GIT, which in turn contribute positively to the overall antioxidant activities of the ingested wine. All of the original wine phenolics had very low permeabilities across Caco-2 cell monolayers, except for syringic acid, p-coumaric acid and an unknown phenolic acid. Limited surface area for absorption (0.33 cm2) and the limited peak detection sensitivity in the LC method may have contributed towards the difficulty in detecting and identifying compounds with low permeability. In addition, extensive metabolism of absorbed phenolics by the Caco-2 cells may occur based on the appearance of several new peaks. However, due to their low concentrations and lack of reference, the identities of the new products and metabolites remain unknown. The present in vitro study suggests that upon ingestion, most of the original phenolic compounds in red wine are lost either through degradation to new compounds and/or complexation with other compounds. However, these products seem to possess some antioxidant activity and may be the key compounds responsible for the health-promoting effects of red wine. The limitation of the present study in detecting and fully identifying these breakdown products and metabolites should be addressed in future studies.

Doctor of Philosophy (Medicine) / Glutamate transporters play a role in removing extracellular excitatory neurotransmitter, L-glutamate into the cells. The rate of the uptake depends on the density of the transporters at the membrane. Some studies claimed that glutamate transporters could transit between the cytoplasm and the membrane on a time-scale of minutes. The present study examined the distribution of glutamate transporter GLAST predominantly expressed in rat cortical cultured astrocytes between the membrane and the cytoplasm by using deconvolution microscopy and then analyzing the images. The regulation of the distribution of GLAST was studied in the presence of glutamate transporter substrate (D-aspartate), purinergic receptor activators (α,β-methylene ATP, adenosine), neuroleptic drugs (clozapine, haloperidol), ammonia (hyperammonia) and Na+/K+-ATPase inhibitors (ouabain, digoxin and FCCP). It was demonstrated that the translocation of GLAST towards the plasma membrane was induced by D-aspartate, α,β-methylene ATP, adenosine, clozapine and ammonia (at 100 μM and very high concentrations of 10 mM). However, the inhibition of Na+/K+-ATPase activity had an opposite effect, resulting in redistribution of GLAST away from the membrane. It has previously been claimed that the membrane-cytoplasm trafficking of GLAST was regulated by phosphorylation catalysed by protein kinase C delta (PKC-delta). Involvement of this mechanism has, however, been put to doubt when rottlerin, a PKC-delta inhibitor, used to test the hypothesis showed to inhibit Na+/K+-ATPase-mediated uptake of Rb+, suggesting that rottlerin influenced the activity of Na+/K+-ATPase. As Na+/K+-ATPase converts ATP to energy and pumps Na+, K+ ions, thus helping to maintain normal electrochemical and ionic gradients across the cell membrane. Its inhibition also reduced D-aspartate transport and could impact on the cytoplasm-to-membrane traffic of GLAST molecules. Furthermore, rottlerin decreased the activity of Na+/K+-ATPase by acting as a mitochondrial inhibitor. The present study has focused on the inhibition of Na+/K+-ATPase activity by rottlerin, ouabain and digoxin in homogenates prepared from rat kidney and cultured astrocytes. The activity of Na+/K+-ATPase was measured by the absorption of inorganic phosphate product generated from the hydrolysis of ATP and the fluorescent transition of the dye RH421 induced by the movement of Na+/K+-ATPase. This approach has a potential to test whether the rottlerin effect on Na+/K+-ATPase is a direct inhibition of the enzyme activity. Rottlerin has been found to block the activity of Na+/K+-ATPase in a dose-dependent manner in both rat kidney and astrocyte homogenates. Therefore, rottlerin inhibited the activity of Na+/K+-ATPase directly in a cell-free preparation, thus strongly indicating that the effect was direct on the enzyme. In parallel experiments, ouabain and digoxin produced similar inhibitions of Na+/K+-ATPase activity in rat kidney while digoxin blocked the activity of Na+/K+-ATPase to a greater extent than ouabain in rat cortical cultured astrocytes. In a separate set of experiments, Na+/K+-ATPase in the astrocytic membrane was found to be unsaturated in E1(Na+)3 conformation in the presence of Na+ ions and this could explain the differences between the effects of digoxin and ouabain on the activity of Na+/K+-ATPase in rat astrocytes. In addition, it was found that at low concentrations of rottlerin, the activity of Na+/K+-ATPase was increased rather than inhibited. This effect was further investigated by studying rottlerin interactions with membrane lipids. The activity of Na+/K+-ATPase has been reported to be regulated by membrane lipids. The enzyme activity can be enhanced by increasing fluidity of the lipid membrane. I have, therefore, proposed that rottlerin binds to the membrane lipids and the effects of rottlerin on Na+/K+-ATPase are mediated by changes in the properties (fluidity) of the membrane. The hypothesis was tested by comparing rottlerin and a detergent, DOC (sodium deoxycholate), for their binding to the lipids by using a DMPC (1,2-Dimyristoyl-sn-Glycero-3-Phosphocholine) monolayer technique. DOC has been shown to both increase and inhibit activity of Na+/K+-ATPase in a manner similar to that displayed by rottlerin. The effects of rottlerin and DOC on the DMPC monolayers were studied by measuring the surface pressure of DMPC monolayers and surface area per DMPC molecule. I established that both rottlerin and DOC decreased the surface pressure of DMPC monolayers and increased the surface area per DMPC molecule. This indicates that both rottlerin and DOC penetrated into the DMPC monolayers. If rottlerin can interact with the lipids, changes in fluidity of the lipid membrane cannot be ruled out and should be considered as a possible factor contributing to the effects of rottlerin on the activity of Na+/K+-ATPase. Overall, the study demonstrates that rottlerin is not only a PKC-delta inhibitor but can have additional effects, both on the enzyme activities (Na+/K+-ATPase) and/or on lipid-containing biological structures such as membranes. The findings have implication not only for studies where rottlerin was used as a supposedly specific PKC-delta inhibitor but also for mechanisms of its toxicity.

Freiburg i. Br., Univ., Diss., 2008.

Cette thèse est consacrée au développement d'assemblages supramoléculaires, qui miment la nature amphiphile des membranes cellulaires. A cette fin, des bicouches lipidiques supportées (SLB) ont été conçues pour l'insertion de la FhuA (protéine de membrane externe d’E. coli). L'interaction de FhuA présente dans la SLB, avec le pb5 (la protéine du bactériophage T5) a ensuite été étudiée par QCM-D. De plus, des bicouches lipidiques suspendues (tBLM) ont été construites sur des monocouches auto-assemblées (SAM) d'un nouveau thiol d'ancrage. Dans cette étude, la formation de tBLM a été minutieusement étudiée par différentes techniques telles que la QCM-D, l'AFM et l'EIS, afin de déduire le rôle du thiol d’ancrage dans le processus de formation de tBLM. En outre, un amphipol biotinylé (B-PCApol), a été employé pour l’immobilisation des protéines membranaires, par exemple la FhuA et de l'intégrine avß3 (humain) sur des surfaces contenant la streptavidine. Avec leurs assemblages respectifs, la constante de dissociation du complexe FhuA-pb5 a été déterminée, tandis que les interactions de l'intégrine avec vitronectine (son ligand naturel) ont été étudiées par SPR. La dernière partie de cette thèse est dédiée à l'étude d'événements de reconnaissance biomoléculaire entre une lectine (ConA) et des sucres multivalents présentés sur un châssis moléculaire, RAFT. / This thesis is dedicated towards the development of supramolecular assemblies, which are capable of mimicking the amphiphilic nature of the cytoplasmic cell membranes. To this effect, Supported Lipid Bilayers (SLB) was designed to incorporate FhuA (an E.coli outer membrane protein). The interaction of FhuA present in the SLB, with pb5 (the bacteriophage T5 protein), was then studied using QCM-D. Further, Tethered Lipid Bilayer Membranes (tBLM) were constructed on Self-Assembled Monolayers (SAMs) of a novel synthetic anchoring thiol. In this study, the tBLM formation was elaborately investigated using a host of techniques such as QCM-D, AFM and EIS, to infer upon the role of the anchoring thiol in the tBLM formation process. Further, a biotinylated Amphipol (B-PCApol) was employed to immobilize membrane proteins such as FhuA and the human αvβ3 integrin on streptavidin containing surfaces. Using their respective assemblies, the dissociation constant of the FhuA-pb5 complex was determined, whereas the interactions of integrin with its ligand vitronectin were studied by SPR. The last part of this thesis, deals with the study of biomolecular recognition events between a lectin (ConA) and multivalent sugars presented on a RAFT scaffold.

Les nanodiamants issus de la détonation ont été découverts en URSS dans les années 1960. Cette technique de synthèse permet de générer pendant un temps très court, des hautes pressions et hautes températures. Les particules de diamant formées, possèdent un diamètre moyen de 5nm et disposent d’une riche chimie de surface. Celle-ci a été étudiée et les sites oxygénés ont été quantifiés par diverses méthodes. Ces sites ont ensuite été modifiés par le greffage (par des liaisons covalentes ou métal-ligand) de molécules organiques (porphyrines, phthalocyanines, ...). Des techniques ont été développées afin de déterminer le rendement du greffage chimique. Les matériaux synthétisés ont ensuite été valorisés par leur utilisation comme filtres aux propriétés non-linéaires pour de la protection laser. Les propriétés colloïdales des nanodiamants ont également été étudiées, afin de séparer les agrégats des particules unitaires et procéder à des dépôts contrôlés. Grâce à un procédé présenté dans ce manuscrit, il a été possible de déposer de manière uniforme des particules unitaires de nanodiamant en monocouche extrêmement dense. Ces dépôts ont été utilisés pour l’élaboration de capteurs. / Detonation nanodiamonds were discovered in the early 60’s in URSS. This synthesis technique allows the generation of high pressures and high temperatures in a short duration. The resulting nanodiamond particles have a mean diameter of 5nm and a developed surface chemistry. The surface composition has been determined and the oxygenated sites were quantified by the use of various methods. These sites have been used to graft (by the use of covalent or metal-ligand bonds) different organic molecules (porphyrins, phthalocyanins, …). Different techniques enabled the determination of the chemical grafting yield. The resulting materials have been used as non-linear filters against laser threat.The nanodiamond colloidal properties have also been studied, to separate the aggregates from the unitary particles and well control their deposition. A method has been described in this manuscript, enabling the uniform deposition of unitary nanodiamond particles forming an extremely dense monolayer. These deposits have been used for sensors applications.

The work presented on this thesis is focused on studies of the kinetics of electron transfer in bilayer lipid membranes (BLMs). Three different types of BLM were studied: i) tethered, ii) pore suspended (commonly known as ‘black’) and iii) based on the avidin – biotin interaction (these are part of the wider group of polymer cushioned BLMs). In order to produce tethered BLMs (tBLMs) of the best quality possible, self – assembled monolayers (SAMs) of a thiolipid (1,2 dipalmitoyl-sn-glycero-phosphothioethanol (DPPTE)) and of the same thiolipid mixed with L α phosphatidylcholine (EggPC) were characterised and their behaviour compared to that of SAMs of two alkanethiols (1 – heptanethiol and 1 – dodecanethiol). The SAMs that were formed by a mixture of lipids (DPPTE+EggPC) presented better kinetic parameters and were the chosen to produce tBLMs. Tethered BLMs were made by using the SAM described above as the lower leaflet; the second leaflet was deposited by vesicle fusion, the vesicles were made of EggPC. tBLMs are commonly used as model membranes, however in biophysical studies free-standing membranes or ‘black’ lipid membranes are more realistic models of cellular processes. The rates of electron transfer in both types of bilayer lipid membranes are compared. These BLMs were modified using two very important mitochondrial membrane associated molecules – ubiquinone-10 (UQ10) and α-tocopherol (VitE). The studies involved the use three redox couples, Fe(CN)_6^(3-/4-), Ru(NH_3 )_6^(3+/2+) and NAD+/NADH using cyclic voltammetry and electrochemical impedance spectroscopy. The NAD+/NADH couple is of particular interest as it is the key to several important biochemical processes. The last type of BLM that was studied was the BLMs based on the avidin – biotin interaction. Avidin was deposited on a platinum surface by electrodeposition and then vesicles composed of EggPC and 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-(biotinyl) (sodium salt) (DOPE(B)) are burst by applying +0.7V (vs. Ag/AgCl, KCl 3.5M), leading to the formation of a supported BLM. The vesicles used had methylene blue (MB) inside; its release, when the vesicles burst, was monitored by cyclic voltammetry and UV-Vis. The kinetic parameters were determined based on the EIS measurements using Fe(CN)_6^(3-/4-) and Ru(NH_3 )_6^(3+/2+) as redox couples.

Cell adhesion is the first step of cell response to materials and the extracellular matrix (ECM), and is essential to all cell behaviours such as cell proliferation, differentiation, migration and apoptosis for anchor-dependent cells. Therefore, studies of cell attachment have important implications to control and study cell behaviours. During many developed techniques for cell attachment, the manipulation of surface chemistry is a very important method to control initial cell attachment. To control cell adhesion on a two-dimensional surface is a simple model to study cell behaviours, and is a fundamental topic for cell biology, tissue engineering, and the development of biosensors. From the engineering point of view, the preparation of a material with controllable surface chemistry can help studies of cell behaviours and help scientists understand how surface features and chemistry influence cell behaviours. During the fabrication, the challenge is to create a surface with heterogeneous surface properties in the micro scale and subsequently to guide cell initial adhesion. In order to control cell adhesion in a spatial and temporal manner, a photochemical method to control surface chemistry was employed to control the surface property for cell adhesion in this project. Two photocleavable derivatives of the nitrobenzyl group were tried on two types of surfaces: a model self-assembled monolayer (SAM) with alkanethiol-gold surface and biodegradable chitosan. Reactive functional groups on two different surfaces can be inactivated by covalent binding with these photocleavable molecules, and light can be further introduced into the system as a stimulus to recover their reactivity. By simply applying a photomask with diffe

Les corps lipidiques (CLs) sont des organites de stockage de lipides neutres rencontrés dans des organismes très variés, depuis les procaryotes jusqu’aux organismes complexes (animaux, végétaux). La surface des CLs est constituée d’une monocouche de phospholipides (PLs) entourant un coeur hydrophobe dans lequel sont stockés les lipides neutres. La monocouche de PLs est associée plus ou moins étroitement avec des protéines structurales, capables de stabiliser les CLs et d’accompagner certaines de leurs modifications morphologiques. Dans les graines de plantes oléagineuses, les CLs sont stabilisés par les oléosines. Ces protéines contiennent le plus long domaine hydrophobe connu (70 résidus) situé entre deux extrémités N et C-terminales hydrophiles. Leur mode d’association avec les CLs n’est pas connu et la littérature fait état de résultats contradictoires concernant leur structure secondaire. Nous avons montré que les oléosines de graines d’Arabidopsis thaliana sont maintenues en solution par différentes catégories de surfactants, comme les détergents anioniques ou des polymères amphiphiles appelés amphipols (Apols). La détermination de la structure secondaire des oléosines maintenues en solution dans ces différents surfactants, par dichroïsme circulaire utilisant le rayonnement synchrotron, a mis en évidence des profils contrastés. Les détergents chargés augmentent le contenu en hélices α des oléosines alors que des proportions plus importantes de feuillets β sont observées avec le détergent zwitterionique (Foscholine-12) ou les Apols. Afin d’obtenir un profil structural modèle dans un système proche du naturel, nous avons réalisé une expression hétérologue d’une isoforme d’oléosine pour la cibler dans les CLs de Saccharomyces cerevisiae. Les CLs purifiés de levures restent intacts et contiennent une forte majorité de cette isoforme d’oléosine à leur surface. Nous avons été les premiers à montrer que les oléosines étaient repliées dans un tel environnement, avec un profil structural majoritairement β. Celui-ci se rapproche du profil observé en Foscholine-12. Ce détergent est par conséquent un outil de choix pour envisager des études structurales plus résolutives (structures tridimensionnelles). / Lipid Bodies (LBs) are neutral lipid storage organelles found in various organisms from procaryotic cells to complex organisms. These neutral lipids are packed into the core of the particle which is surrounded by a phospholipid monolayer. The surface of LBs is more or less tightly associated with structural proteins involved in their stabilization and able to assist modifications of their shape or size. In oleaginous seeds, LBs are stabilized by oleosins. These proteins contain the longest known hydrophobic domain (70 residues) flanked by hydrophilic N and C-termini. The way of association of these proteins with LBs is poorly known and secondary structure descriptions in the literature are contradictory. We have shown that Arabidopsis thaliana seed oleosins could be solubilized by various surfactants such as detergents or amphiphatic polymers called amphipols (Apols). Secondary structure determination of solubilized oleosins using synchrotron radiation circular dichroism gave contrasted profiles. Negatively charged detergents increase the α-helix content of oleosins whereas the zwitterionic detergent (Foscholine-12) or Apols allow higher proportions of β-sheets. In order to get closer to the natural environment of olesins, we have opted for the heterologous expression of one oleosin isoform in the yeast Saccharomyces cerevisiae. This approach allows the biological targeting and insertion of oleosins into cytosolic LBs. Purified yeast LBs remain intact and contain a large majority of oleosins at their surface. In this natural like environment, oleosins are folded and contain a majority of β-sheets. This secondary structure profile is close to that of oleosins solubilized by Foscholin-12, making it a suitable detergent for more resolutive structural studies (three-dimensional structures).

This dissertation evaluates how gold nanoparticle structure and local environment influence resulting sensor function when using these nanomaterials for complex sample analysis. Molecular imprinted polymers (MIPs), a class of plastic antibodies, are engineered and incorporated into these nanosensors thereby facilitating the quantitative detection of a variety of small molecules when Raman spectroscopy and surface enhanced Raman scattering (SERS) are used for detection. First, homogeneous seeded growth gold nanosphere synthesis is evaluated as a function of ionic double layer composition and thickness. Systematically increasing the citrate concentration during synthesis improves nanomaterial shape homogeneity; however, further elevations of citrate concentration increase the number of internal and/or external atomic defects in the nanomaterials which leads to decreasing solution-phase stability. Next, spherical gold nanoparticles are modified with self-assembled monolayer (SAM), modeled using interfacial energy calculations, and experimental characterized using transmission electron microscopy, NMR, extinction spectroscopy, zeta potential, X-ray photoelectron spectroscopy, and flocculation studies to assess the morphology, surface chemistry, optical properties, surface charge, SAM packing density, and nanoparticle stability, respectively. The number of molecules on the nanostructures increases with increasing ionic strength (by decreasing the electrostatic interfacial energy between assembled molecules) which subsequently promotes nanoparticle stability. Third, plastic antibodies that recognize three drugs commonly used to treat migraines are engineered. These methacrylate-based MIPs are synthesized, extracted, characterized, and used to quantitatively and directly detect over-the-counter drugs in complex samples using Raman microscopy. These results along with numerical approximation methods to estimate drug binding site densities and dissociation constants with the MIPs serve as a foundation for understanding how modest recognition selectivity of MIPs coupled with shifts in the vibrational energy modes from the drugs upon hydrogen binding to the polymer backbone promote sensitive and selective drug detection in complex samples. Finally, nanomaterial incorporation into MIPs for applications in SERS-based biosensors is evaluated. Importantly, gold nanorod concentration increases the detectability of the same drugs using MIPs as pre-concentration and recognition elements. This combination of materials, theory, and applications forms a solid foundation which should aid in the design and development of MIP nanobiosensors for specific and sensitive detection of small molecules in complex matrices.