Tumour initiation and progression occur due to oncogenic mutations that also contribute to therapeutic resistance in many human tumours. Mutations activating the "PI3K/AKT" signalling pathway and inactivating the "TP53" tumour suppressor gene are common mechanisms that cancer cells require to proliferate and escape pre-programmed cell death. p53 mutant (p53mut) tumours not only fail to respond to DNA damaging therapy, but are also described to promote therapeutic resistance by dominant negative suppression of p53 dependent promoter activity. Our work identifies the crucial interaction between the PI3K/AKT pathway and p53 mutations that regulate treatment sensitivity in tumours. Using a combination of in vitro and in vivo techniques we demonstrate that AKT inhibition promotes reduced cellular levels of p53mut via a novel Nucleophosmin 1 (NPM) mediated regulation of the tumour suppressor p14ARF and promotes re-engagement of cell cycle arrest, senescence and increased sensitivity to ionising radiation in both in vivo and in vitro systems. We show that the PI3K/AKT pathway plays an important role in the regulation of p53mut and inhibitors of this pathway can re-sensitise treatment resistant tumours. This has helped us to simultaneously highlight the cohort of patients where the greatest efficacy may be achieved in clinical practise. We further show that the AKT mediated regulation of NPM that we describe in solid tumours is relevant in Acute Myeloid Leukaemia (AML) with mutated NPM, albeit showing physiologically different effects. This further highlights the necessity for rational treatment planning with the newer targeted agents that inhibit specific signalling pathways in AML patients.

O gene humano lysine methyltransferase 2E (KMT2E) pertence ao grupo Trithorax (TrxG) e age como proteína modificadora de histonas envolvida no controle transcricional de genes relacionados a hematopoiese. Foi previamente identificado como supressor tumoral, atuando sobre a diferenciação, proliferação e ciclo celular. DAMM et al. (2011) e LUCENA-ARAÚJO et al. (2014) descreveram a associação entre baixos níveis de expressão do gene KMT2E e desfechos desfavoráveis do tratamento de pacientes com leucemia mielóide aguda (LMA) e leucemia promielocítica aguda (LPA), respectivamente. O objetivo desse trabalho foi estudar os efeitos do aumento da expressão do gene KMT2E na leucemia mielóide aguda (LMA). Foi utilizada a linhagem celular U937, reconhecida como modelo de LMA, e o aumento da expressão do gene de interesse foi obtido por meio da transfecção das células com um vetor lentiviral contendo o cDNA codificante para a isoforma longa do gene (pCDH-MSCV-MCS-EF1-GFP+Puro, aqui chamado pMEG). As partículas lentivirais foram geradas por co-transfecção em células da linhagem HEK 293T, e posteriormente, titulados com a linhagem celular HT 1080. A expressão do gene e a presença da proteína foram confirmadas por qPCR e western blotting, respectivamente. Foram realizados ensaios funcionais de ciclo celular, proliferação, viabilidade, apoptose espontânea e induzida por trióxido de arsênico e luz ultravioleta e diferenciação celular induzida por 12-miristato 13-acetato de forbol (TPA), com as amostras U937 wild type (WT), U937 pMEG (U937 transduzidas com o vetor vazio) e U937 pMEG-KMT2E. Também foram realizadas mensurações da massa tumoral das células inoculadas em camundongos NSG. A expressão relativa do gene KMT2E na célula U937 pMEG-KMT2E foi 1000 vezes mais alta que na célula U937 sem a modificação genética. Os ensaios de diferenciação celular demonstraram que as células U937 pMEG-KMT2E apresentaram maior diferenciação em monócitos/macrófagos que as células controles, quando levada em consideração a marcação para o antígeno CD11c. A expressão induzida de KMT2E em células U937 não alterou a proliferação, viabilidade, ciclo celular, apoptose, ix espontânea ou induzida e o aspecto clonogênico in vitro, porém, foi associado a um maior crescimento tumoral em modelo animal. Nossa hipótese para justificar as diferenças entre os achados in vitro e in vivo é que o aumento da expressão de KMT2E, talvez por meio do aumento de CD11c, facilitou a interação entre as células e o microambiente, estimulando assim o crescimento tumoral in vivo. / The human lysine methyltransferase 2E (KMT2E) gene belongs to the Trithorax (TrxG) group and acts as a histone modifying protein participating in the transcriptional regulation of hematopoiesis-related genes. KMT2E has been previously described as a tumor suppressor, involved in cellular differentiation, proliferation and cell cycle progression. DAMM et al. (2011) and LUCENA-ARAÚJO et al. (2014) described the association between low levels of KMT2E gene expression and poor treatment outcomes in patients with acute myeloid leukemia (AML) and acute promyelocytic leukemia (APL), respectively. The aim of this project was to study the effects of high levels of KMT2E expression in acute myeloid leukemia (AML). For this purpose, the U937 AML cell line was used and an high expression of the gene was obtained by transfecting the cells with a lentiviral vector containing the cDNA encoding the long isoform of the gene (pCDH-MSCV-MCS-EF1- GFP + Pure, here called pMEG). The lentiviral particles were transfected into HEK 293T cells and the viral concentration was determined by titration using HT 1080 cells. The gene expression and the protein presence were confirmed by qPCR and western blotting, respectively. All experiments to determine the biological function of overexpressed KMT2E were conducted with U937 wild type, U937 pMEG (U937 transduced with the empty vector) and U937 pMEG-KMT2E cells. In-vitro the impact of overexpressed KMT2E was studied on cell cycle progression, proliferation and cell viability, spontaneous and induced apoptosis by arsenic trioxide and ultraviolet light and cell differentiation induced by 12-myristate 13-phorbol acetate (TPA). In vivo, the effect of overexpressed KMT2E was detected by comparing the tumor mass growth in NSG mice when inoculating U937 pMEG and pMEG-KMT2E cells in each flank of the same mouse. The relative expression level of the KMT2E gene in pMEG-KMT2E U937 cells was 1000 higher than in the wild type U937 strain. The cell differentiation assay revealed that U937 pMEG-KMT2E cells presented an increased monocyte/macrophage differentiation, when analyzing the CD11c antigen. Induced xi overexpression of KMT2E in U937 cells did not alter cell proliferation, cell viability, cell cycle progression, spontaneous or induced apoptosis or clonogenic appearance in vitro. However, the overexpression of KMT2E resulted in an increased tumor mass formation in vivo. Taking our discrepant in vitro and in vivo results into account, we could hypothesize that the increased expression of KMT2E, possibly caused by the enhanced expression of CD11c, favored the interaction between U937 pMEGKMT2E cells and their microenvironment, thereby stimulating tumor growth in vivo.

Recent developments in single-cell measurement technologies have yielded dramatic increases in throughput (measured cells per experiment) and dimensionality (measured features per cell). In particular, the introduction of mass cytometry has made possible the simultaneous quantification of dozens of protein species in millions of individual cells in a single experiment. The raw data produced by such high-dimensional single-cell measurements provide unprecedented potential to reveal the phenotypic heterogeneity of cellular systems. In order to realize this potential, novel computational techniques are required to extract knowledge from these complex data. Analysis of single-cell data is a new challenge for computational biology, as early development in the field was tailored to technologies that sacrifice single-cell resolution, such as DNA microarrays. The challenges for single-cell data are quite distinct and require multidimensional modeling of complex population structure. Particular challenges include nonlinear relationships between measured features and non-convex subpopulations. This thesis integrates methods from computational geometry and network analysis to develop a framework for identifying the population structure in high-dimensional single-cell data. At the center of this framework is PhenoGraph, and algorithmic approach to defining subpopulations, which when applied to healthy bone marrow data was shown to reconstruct known immune cell types automatically without prior information. PhenoGraph demonstrated superior accuracy, robustness, and efficiency, compared to other methods. The data-driven approach becomes truly powerful when applied to less characterized systems, such as malignancies, in which the tissue diverges from its healthy population composition. Applying PhenoGraph to bone marrow samples from a cohort of acute myeloid leukemia (AML) patients, the thesis presents several insights into the pathophysiology of AML, which were extracted by virtue of the computational isolation of leukemic subpopulations. For example, it is shown that leukemic subpopulations diverge from healthy bone marrow but not without bound: Leukemic cells are apparently free to explore only a restricted phenotypic space that mimics normal myeloid development. Further, the phenotypic composition of a sample is associated with its cytogenetics, demonstrating a genetic influence on the population structure of leukemic bone marrow. The thesis goes on to show that functional heterogeneity of leukemic samples can be computationally inferred from molecular perturbation data. Using a variety of methods that build on PhenoGraph's foundations, the thesis presents a characterization of leukemic subpopulations based on an inferred stem-like signaling pattern. Through this analysis, it is shown that surface phenotypes often fail to reflect the true underlying functional state of the subpopulation, and that this functional stem-like state is in fact a powerful predictor of survival in large, independent cohorts. Altogether, the thesis takes the existence and importance of cellular heterogeneity as its starting point and presents a mathematical framework and computational toolkit for analyzing samples from this perspective. It is shown that phenotypic and functional heterogeneity are robust characteristics of acute myeloid leukemia with clinically significant ramifications.

Myeloid Leukemia Factor 1 (Mlf1) is the murine homolog of MLF1, which was identified as a fusion gene with Nucleophosmin (NPM) resulting from the (3;5)(q25.1;q34) translocation associated with acute myeloid leukemia and myelodysplastic syndrome (Yoneda-Kato et al., 1996). Mlf1 was independently isolated using cDNA representational difference to identify genes up-regulated when an erythroleukemic cell line underwent a lineage switch to display a monoblastoid phenotype (Williams et al., 1999). Mlf1 has been shown to enhance myeloid differentiation and suppress erythroid differentiation; however, its mechanism of action is unknown. A yeast two hybrid screen was employed to identify Mlf1-interacting proteins. This screen isolated a number of known protein, as well as several novel molecules, that bound Mlf1. One of these was 14-3-3ξ, a member of a family of molecules that bind phosphoserine motifs and regulate the subcellular localization of partner proteins. Mlf1 contains a classic RSXSXP sequence for 14-3-3 binding and associated with 14-3-3ξ; via this phosphorylated motif (Lim et al., 2002). The aim of this thesis was to characterise a novel Mlf1-interacting protein that had some homology to protein kinases and was named Mlf1 Adaptor Molecule (Madm). Adaptor proteins are molecules that possess no enzymatic or transcriptional activity, but instead mediate protein-protein interactions. Madm is encoded by a gene consisting of 18 exons and promoter analysis suggested Madm expression might be widespread; indeed Northern blotting of adult tissues and in situ hybridization of embryos demonstrated ubiquitous Madm expression. Significantly, the Madm protein sequence is highly conserved across diverse species. / Madm formed dimers and although it contains a kinase-like domain, the protein lacks several critical residues required for catalytic activity, including an ATP-binding site. Purification of recombinant Madm revealed that the protein was not a kinase; however, studies in mammalian cells showed that Madm associated with a kinase and that Madm was phosphorylated on serine residues in vivo and in vitro. Madm also contains a nuclear localization sequence and nuclear export sequence and was shown to localise to both cytoplasm and nucleus by subcellular fractionation and confocal microscopy. The presence of two nuclear receptor binding motifs (consensus MILL) suggests that Madm may have a functional role in the nucleus. Madm co-immunoprecipitated with Mlf1 and co-localized in the cytoplasm. In addition, the Madm-associated kinase phosphorylated Mlf1 on serine residues, including the RSXSXP motif. In contrast to wild-type Mlf1, the oncogenic fusion protein NPM-MLF1 did not bind 14-3-3i; and localized exclusively in the nucleus. Although Madm co-immunoprecipitated with NPM-MLF1 the binding mechanism was altered. As Mlf1 is able to reprogram erythroleukemic cells to display a monoblastoid phenotype and potentiate myeloid maturation (Williams et al., 1999), the effects of Madm on myeloid differentiation was investigated. However, unlike Mlf1, ectopic expression of Madm in M1 myeloid cells suppressed cytokine-induced differentiation. / In summary, the data presented in this thesis reports on the cloning and characterization of a novel adaptor protein that is involved in the phosphorylation of the proto-oncoprotein MIM. Phosphorylation of Mlf1 is likely to affect its interaction with other proteins, such as 14-3-3~. Complex formation, therefore, may well alter the localization of Mlf1 and Madm, and influence hematopoietic differentiation.

Understanding the factors that regulate the growth and differentiation of haemopoietic stem cells (HSC) remains a major challenge. In this study, the proliferation and differentiation of CD34+ cells from normal donors and chronic myeloid leukaemia (CML) patients was compared. The proliferation and entry of CML cells into the cell cycle was decreased relative to cells from normal donors, and greater heterogeneity in the phenotype of CML cells at the initiation of culture was observed. Analysis of phenotype concomitant with cell division also demonstrated that the differentiation of normal CD34+ cells was consistent between donors, while marked variability was observed in the differentiation of CD34+ cells from CML patients. This included expression of CD13, CD33, CD38 and HLA-DR, which were linked to cell division in normal but not CML cells. The tyrosine kinase inhibitor, imatinib, is a novel drug displaying promising results in the treatment of CML by specifically inhibiting the growth of leukaemic cells. To examine whether myelosuppression observed in patients treated with imatinib may arise from inhibition of normal haemopoiesis, imatinib was added to colony assays established using cells from normal bone marrow. Suppression of monocyte/macrophage growth, but not that of eosinophils or neutrophils, was observed at therapeutic concentrations of imatinib. Inhibition of monocytic differentiation to macrophages was also observed and was associated with decreased functional capacity such as altered antigen uptake, production of proinflammatory cytokines and stimulation of responder cells. The specific suppression of monocyte/macrophage differentiation and function was not due to blockade of tyrosine kinases known to be inhibited by imatinib and was consistent with an inhibition of the M-CSF/c-fms signalling pathway. This hypothesis was tested using a cell line that was dependent on M-CSF for growth and survival. Cell proliferation and phosphorylation of c-fms were inhibited at an IC50 of 1.9μM and 1.4μM imatinib respectively and this was not attributable to decreased c-fms expression. These important findings therefore identify c-fms as a further target of imatinib, and suggest that imatinib should be considered for treatment of diseases where c-fms is implicated. This includes breast and ovarian cancer and inflammatory conditions such as rheumatoid arthritis. Potential side effects resulting from imatinib treatment must also be considered. / Thesis (Ph.D.)--School of Medicine, 2004.

 Acute myeloid leukemia (AML) is a group of heterogeneous diseases characterized by an abnormal increase in myeloblasts. Despite intensive chemotherapy and allogeneic bone marrow transplantation, the treatment outcome of AML remains unsatisfactory, with a cure rate of only about 30%. Therefore, novel therapeutic strategies targeting the pathogenetic pathways of leukemia initiation and progression are needed. Using intracellular phospho-flow analysis with normal bone marrow as reference, we detected an increase in phosphorylated-STAT5 (pSTAT5) in three leukemic cell lines (K562, KG-1 and ML-2) and 15 primary AML samples. Treatment with specific JAK2 inhibitor TG101209 and JAK2/3 inhibitor AG490 significantly reduced pSTAT5 level and leukemia cell growth associated with an increase in apoptosis and decrease in cellular proliferation. The clonogenic activities of these leukemia cell lines were also significantly reduced. Furthermore, treatment with these inhibitors in K562 and KG-1 also significantly reduced the WNT signaling activity, as enumerated by the TOP/FLASH luciferase assay. In addition, genes associated with oncogenic potential and anti-apoptosis were significantly reduced, consistent with the pathogenetic role of JAK-STAT pathway. In summary, the present study highlighted the importance of the JAK2-STAT5 signaling pathway in sustaining AML. The results may open up a new avenue whereby new therapeutic strategies targeting AML can be designed. / published_or_final_version / Medicine / Master / Master of Philosophy

No description available.

Acute myeloid leukemia (AML) often remains refractory to current chemotherapy and transplantation approaches despite many advances in our understanding of mechanisms in leukemogenesis. The bone marrow “niche” or microenvironment, however, may be permissive to leukemia development and studying interactions between the microenvironment and leukemia cells may provide new insight for therapeutic advances. Mesenchymal stem cells (MSCs) are central to the development and maintenance of the bone marrow niche and have been shown to have important functional alterations derived from patients with different hematological disorders. The extent to which MSCs derived from AML patients are altered remains unclear. The aim of this study was to detect changes occurring in MSCs obtained from human bone marrow in patients with AML by comparing their function and gene expression pattern with normal age-matched controls. MSCs expanded from patients diagnosed with acute leukemia were observed to have heterogeneous morphological characteristics compared to the healthy controls. Immunohistochemistry and flow data confirmed the typical cell surface immunophenotype of CD90+ CD105+ CD73+ CD34- CD45-, although MSCs from two patients with AML revealed reduced surface expression of CD105 and CD90 antigens respectively. Differentiation assays demonstrated the potential of MSCs from AML patients and healthy donors to differentiate into bone, fat and cartilage. However, the ability of MSCs from AML samples to support hematopoietic function of CD34+ progenitors was found to be impaired while the key hematopoietic genes were found to be differentially expressed on AML-MSCs compared to nMSCs. These studies indicate that there exist differences in the biologic profile of MSCs from AML patients compared to MSCs derived from healthy donors. The results described in the thesis provide a formulation for additional studies that may allow us to identify new targets for improved treatment of AML.

Thesis (Ph. D.)--University of Adelaide, 1985. / Includes bibliographical references (leaves 129-145).

Thesis (Ph. D.)--University of Hong Kong, 2008. / Includes bibliographical references (leaf 112-132) Also available in print.