Genotype-phenotype analyses continue to be the primary goal for genome analyses in livestock and poultry breeding. Essential to accomplish this goal is the need to identify variation at the genomic level. To test the hypothesis that DNA sequence variations in inflammatory response genes are associated with phenotypic differences in the heritage turkey, the primary objective of this project was to search for single nucleotide polymorphisms (SNPs) in candidate inflammatory response genes. A minor objective was to develop a system for inducing inflammatory response in the turkey using a microbe-based lipopolysaccharide (LPS), an approach previously described for the chicken. A total of 18 SNPs was identified in the three genes screened in this project: Interleukin 6 (IL6) and 8 (IL8), and NLRX1. Mortality data from the LPS challenge were not significantly different among the strains. Further gene expression analyses will be part of future work. The SNP data represent the first extensive analyses of candidate inflammatory response genes in the turkey. Combined with the protocols developed for inflammation assessment in the turkey the SNPs described here will be valuable resources for future inflammation:genotype evaluation in the turkey / MS / Though progress has been made in the genome analyses of the turkey, Meleagris gallopavo, our understanding of the genotype: phenotype relationships continue to lag those of agriculturally important animal species. Among the phenotypes for which genetic understanding can be useful is inflammation, a complex trait that is influence by many interdependent response mechanisms. These mechanisms, regarding differences across heritage turkeys, has been mildly investigated. Since Nucleotide Polymorphism (SNP) screening is a common method used to comprehend the robust effects these differences have on genotype and phenotype. Here, we report initial investigations in our lab of the genetics of inflammation in the turkey using comparative information from the chicken NOD like receptor X1 (NLRX1), turkey interleukin 6 (IL6), and Interleukin 8 (IL8). These genes were screened for nucleotide variants that may be informative for future studies that will investigate the turkey’s response to Salmonella derived lipopolysaccharide that can induce inflammation. The rationale for selecting these three genes is that IL8, IL6, and NLRX1 have pro inflammatory and/or anti-inflammatory functions that respond to maintain homeostasis. Primers were designed and investigated using DNA from Broad Breasted White (BBW), and Broad Breasted Bronze (BBB), Blue slate (SL), Spanish Black (SBL), Midget White (MW) and Royal Palm (RP). The birds were also challenged with 1.5 mg/kg Lipopolysaccharide (LPS) intra-abdominally to collect tissue post LPS challenge. Tissues was collected from the thymus, spleen, and bursa of fabricius: organs identified to effect inflammation. A total of 2,239 bp for IL8, 2,439 bp for IL 6, and 572 bp for NLRX1 were screened for SNPs. SNP analysis revealed 16 SNPs in the inflammatory response genes mentioned.

Orientador: Ronei Luciano Mamoni / Dissertação (mestrado) - Universidade Estadual de Campinas, Faculdade de Ciências Médicas / Made available in DSpace on 2018-08-27T05:56:25Z (GMT). No. of bitstreams: 1 Castro_LiviaFurquimde_M.pdf: 5966667 bytes, checksum: bd25c56ae25a8825069884bedd9ca8ce (MD5) Previous issue date: 2015 / Resumo: Diversos estudos demonstram que a resposta inflamatória é de extrema importância para o controle da Paracoccidioidomicose (PCM). Essa resposta inflamatória é iniciada pelo reconhecimento das células fúngicas por receptores expressos por células do sistema imunológico inato. Dentre esses receptores, o NLRP3 foi associado com o reconhecimento de fungos patogênicos em modelos experimentais, atuando em conjunto com o TLR2 e a dectina-1. O NLRP3 atua na formação de um complexo multiproteico denominado inflamassoma, o qual ativa a caspase-1, que é responsável pela produção das formas ativas de duas importantes citocinas inflamatórias: a IL-1? e a IL-18. Esse estudo teve por objetivo investigar o envolvimento do NLRP3 na ativação da resposta inflamatória de macrófagos e células dendríticas humanas (DCs) derivadas de monócitos em resposta ao Paracoccidioides brasiliensis (Pb), além de avaliar a participação do NLRP3 na indução da resposta imunológica adaptativa. Nossos resultados demonstraram que células de lesões de pacientes com PCM (mucosa oral ou linfonodos) apresentam produção de IL-1beta, IL-18 e IL-37 e que macrófagos dessas lesões são positivos para Caspase-1 e NLRP3. Também fomos capazes de demonstrar que o reconhecimento de células leveduriformes por DCs e macrófagos humanos leva à ativação do inflamassoma NLRP3 e consequente produção de IL-1 e IL-18. Esse reconhecimento envolve a participação de receptores de superfície (TLR2 e Dectina-1), sendo que a produção dessas citocinas é dependente da sinalização via dectina-1 e fosforilação da proteína Syk. Além disso, observamos que a ativação do inflamassoma NLRP3, após o reconhecimento do fungo, envolve como principais mecanismos a produção de ROS e o efluxo de K+. Nossos dados também demonstraram que o inflamassoma NLRP3 é essencial para a diferenciação de células Th17 e Th1 e que sua inibição leva à um aumento de células Th2 e Treg. Em conjunto nossos dados indicam que a ativação do NLRP3 desempenha um papel importante, tanto na indução de uma resposta inflamatória inicial, quanto no desenvolvimento de uma resposta adquirida que pode ser associada à resistência à infecção pelo P. brasiliensis / Abstract: Several studies have shown that the inflammatory response is crucial for the control of paracoccidioidomycosis (PCM). This inflammatory response is initiated by the recognition of fungal yeast cells by receptors expressed by cells of the innate immune system. Among these receptors, NLRP3 was associated with the recognition of pathogenic fungi in experimental models, working in conjunction with TLR2 and dectin-1. The NLRP3 acts forming a multiproteic complex called inflammasome, which activates caspase-1, and the production of the active forms of two important cytokines: IL-1? and IL-18. This study aimed to investigate the involvement of NLRP3 activation in the inflammatory response of macrophages and human dendritic cells (DCs) derived from monocytes, in response to Paracoccidioides brasiliensis (Pb), and to evaluate the participation of NLRP3 in the induction of the subsequent adaptive immune response. Our results demonstrated that cells of lesions from PCM patients (oral mucosa and lymph nodes) express IL-1beta, IL-18 and IL-37, and that macrophages in these lesions are positive for caspase-1 and NLRP3. We were also able to demonstrate that the recognition of Pb yeast cells by human macrophages and DCs leads to the NLRP3 inflammasome activation and production of IL-1 and IL-18. This recognition involves the participation of surface receptors (TLR2 and Dectin-1), and the production of these cytokines was dependent on signaling via dectin-1 and phosphorylation of Syk. In addition, we observed that the activation of the NLRP3 inflammasome, after recognition of the fungus, involves as main mechanisms the ROS production and the K+ efflux. Our data also demonstrate that the NLRP3 inflammasome are essential for the differentiation of Th1 and Th17 cells and its inhibition leads to an increased frequency of Th2 and Treg cells. Taken together our data indicated that activation of NLRP3 present an important role in both the induction of an initial inflammatory response, and in the development of an acquired immune response, which can be associated with the resistance to the P. brasiliensis infection / Mestrado / Ciencias Biomedicas / Mestra em Ciências Médicas

Short ORF-encoded peptides (SEPs) are increasingly being identified as functional elements in various cellular processes. The current computational methods and experimental molecular biochemistry allow us to discover putative SEPs or micropeptides from proteogenomic datasets and experimentally validate them. Here, we identified a micropeptide produced from a putative long noncoding RNA (lncRNA) 1810058I24Rik which is downregulated in both human and murine myeloid cells exposed to lipopolysaccharide (LPS), as well as other TLR ligands and inflammatory cytokines. Analysis of lncRNA 1810058I24Rik subcellular localization revealed this transcript is localized in the cytosol, prompting us to evaluate its coding potential. In vitro translation with 35S-labeled methionine resulted in translation of a 47 amino acid micropeptide. Microscopy and subcellular fractionation studies in macrophages demonstrated endogenous expression of this peptide on the mitochondrion. We thus named this gene ‘Mitochondrial micropeptide-47 (Mm47)’. Functional studies using siRNA and Cripsr-cas9-mediated deletion in primary cells, showed that the transcriptional response downstream of TLR4 was not affected by Mm47 loss of function. In contrast, both the Crispr-cas9- and siRNA-targeted BMDM cells were compromised for Nlrp3 inflammasome responses. However, the primary macrophages derived from the Mm47 knockout mice do not require Mm47 for Nlrp3 activation, likely due to basal downregulation of a negative regulator microRNA of Nlrp3 called Mir-223. Notably, the Mm47-deficient mice are susceptible to influenza virus infection and succumb despite comparable antiviral and inflammatory response to wildtype mice. We hypothesize that the Mm47 deficiency may affect the antiviral resilience of mice due to secondary mitochondria dependent immunometabolic defect or failure of recovery from immune pathology, which warrants further investigation. This study therefore identifies a novel mitochondrial micropeptide Mm47 that is required for activation of the Nlrp3 inflammasome in cells and resistance to influenza virus infection. Broadly, this work highlights the presence of translatable ORFs is annotated noncoding RNA transcripts and underscores their importance in innate immunity and virus infection.