The regulation of gene expression at the transcriptional level is one of the paramount mechanisms for maintaining control of growth, development and metabolic homeostasis. The Liver X Receptor (LXRa) is a novel member of the nuclear hormone receptor superfamily of transcription factors, which was originally isolated in our laboratory. Subsequent studies have revealed that LXRa is an essential transcriptional regulator of cholesterol homeostasis and a number of potent LXRa activators, including the oxysterol 22(R)-hydroxycholesterol have also been identified. As other members of the superfamily, LXRa exerts its regulatory control of target genes directly by binding to LXRa-responsive enhancer elements (LXREs), located upstream of the target gene promoter. Our laboratory initially demonstrated that LXRa heterodimerizes with the Retinoid X Receptor (RXRa) and cooperatively binds to a synthetic LXRE (DR4- LXRE), which consists of direct repeats of the hexad core consensus sequence spaced by four nucleotides. Tc date, two naturally occurring LXREs have been identified, including the LXRE--L\MTV element, located in the promoter region of the mouse mammary tumor vims long terminal repeat and the CYP7 A-LXRE element, located in the proximal promoter region of the rat cholesterol a-hydroxylase gene. In order to delineate the mechanism by which LXRa mediates the transcriptional regulation of target genes, a series of highly integrated characterization studies were initiated. Our initial interest was identifying the transactivation properties ofLXRa. Thus, a series of tramient transfection studies were performed, which investigated the effect of various LXREs, ligands/activators and cell lines on LXRa.-mediated transactivation. Ultimately, these studies revealed that the LXRa.-mediated transcriptional response was highly varied and specifically dependent upon the response element, ligand and cell line employed. Thus, these investigations indicate the specificity and great diversity in the nuclear hormone receptor-mediated transcriptional regulation of target genes. Furthermore, these studies resulted in the establishment of a viable and efficient transient transfection assay for further LXRa. in vivo investigations. Nuclear hormone receptors, including LXRa., are comprised of several modular domains termed AlB, C, D and E. A number of recent studies have implicated the highly divergent AlB domain of variety of nuclear receptors, and their isoforms, as a participant in transactivation. Specifically, these nuclear receptors have been shown to posses, within their respective AlB domains, an autonomous ligand-independent transactivation function termed the AF-1 domain, which can either function independently or can synergize with the E domain of the same receptor. Thus, determination of whether or not the 97 amino acid AI B domain of LXRa. participated in LXRa.-mediated transactivation became a main focus; in our investigation of LXRa.. In vitro EMSA analysis revealed that deletion of up to 63 amino acids of the N-terminal region of the LXRa. AlB domain did not effect either LXRa./ RXR.a. heterodimerization nor cooperative binding to LXREs. In vivo transient transfection assays further illustrated that theN-terminal 63 amino acids of the LXR.a. AlB domain were dispensable for LXR.a./RXR.a.-mediated transactivation. Therefore, as determined by the limitations of these assays, theNIV terminal63 amino acids of the LXRa AlB domain do not participate in neither transactivation nor heterodimerization and subsequent binding to LXR.Es. Transcriptional regulation, mediated by members of the nuclear hormone receptor superfamily, has been shown to involve multiple auxiliary co-factors, which modulate receptor-mediated tnmsactivation. These co-factors can either serve to repress (corepressors) or activate (co-activators) transcription not only through blocking or facilitating interactio r1s, respectively, between receptors and the basal transcription machinery but also through chromatin remodeling. Thus, the identification of LXRainteracting co-facton and the subsequent investigation of their ability to modulate LXRamediated transactiva1ion, were of particular interest. We demonstrated, via utilization of in vitro GST-binding assays, that LXRa interacts with RIP 140, SRC-1a and SMRT cofactors in a ligand-independent manner. Furthermore, these studies illustrate that the LXRa AF-2 core domain is necessary for efficient RIP 140 and SRC-1a binding. Surprisingly, this domain appears to impede, although not absolutely, the SMRTILXRa interaction, which has also been observed for the Retinoic Acid Receptor (RAR)/SMRT interaction. Functional studies ofLXRa, RXRa and RIP 140 indicate that RIP 140 antagonizes LXRa/RXR.a-mediated transactivation, which suggests that RIP 140 may serve to attenuate the transcriptional response of nuclear receptors modulated by other, more potent co-activators, as previously suggested in Peroxisome Proliferator-activated receptor a (PPARa);RIP 140 studies. As well, it is apparent that neither'the RIP 140/LXRa interaction nor the RIP 140-mediated repression of LXRa activity is effected upon deletion of the N-terminal 63 amino acids of the LXR.a. AlB domain. Interestingly, functional studies of LXR.a., RXR.a. and the partial SRC-1a clone, which lacks the Nterminal PAS-bHLH domain, indicate that this SRC-1a clone antagonized LXR.a.IRXR.a.mediated transactivation. While this result may simply demonstrate the necessity for a full length SRC-1a clone it may also indicate SRC-1 isoform-specific differences as previously illustrated in Estrogen Receptor (ER)/SRC-1 studies. Lastly, preliminary functional studies of LXR.a., RXR.a. and S:MR.T indicate that S:MR.T has no significant effect on LXR.a./RXR-mediated transactivation. These tentative results indicate that while LXR.a. and SMRT interaction in solution, S:MR.T may not be able to interact with LXR.a. when bound to DNA, and is thus unable to modulate LXR.a.-mediated transcriptional activation as previously demonstrated for the PP ARy and the orphan receptor Rev Erb. Taken together, the investigations presented in this study of LXR.a., further our understanding of not only the mechanism by which LXR.a. mediates its transcriptional response, but also hew nuclear receptors achieve specificity and diversity in the activation of target gene expression. / Thesis / Master of Science (MS)

The nuclear hormone receptor (NHR) liver X receptor β (LXRβ) has been highlighted as a possible candidate for involvement in ageing by several recent findings. LXRβ is the closest human homologue to the longevity-associated gene daf-12 in the nematode worm and LXRβ haplotypes have been associated with longevity at old ages in a longitudinal human genetic study. Whilst LXRβ is primarily responsible for mediating the effects of LXR oxysterol ligands throughout most of the body, LXRβ is the primary mediator of these effects uniquely in the skin. In this thesis studies are presented on the expression of LXRβ mRNA and protein in human skin, comparing young vs intrinsically (chronologically) aged skin, photoprotected vs photoaged (dueto ultraviolet radiation exposure) skin and untreated vs retinoid-treated photoaged skin, retinoid treatment being a primary clinical intervention for photoageing. In situ hybridisation and quantitative polymerase chain reaction (qPCR) were used to identify LXRβ mRNA and immunofluorescence was used to identify LXRβ protein. These comparisons revealed that both the mRNA and protein expression of LXRβ are highly stable throughout the ageing, photoageing and retinoid treatment of human skin. Previous authors have identified overlap between microarray gene expression datasets in the LXRβ-/- mouse and in normal human skin ageing. In these studies comparisons of different microarray datasets have been conducted with the finding that LXR agonist treatment of mice produces gene regulation patterns with significant overlap to that seen in both ageing and calorie restriction in mice (binomial test; p<0.001). Furthermore, when considering the genes commonly regulated in LXR agonist treatment and ageing, 73% of these genes are regulated in opposite directions. Conversely, when considering genes commonly regulated in LXR agonist treatment and calorie restriction, 70% of these genes are regulated in the same direction. These findings suggest that LXR agonists have possible benefit as ageing therapies, perhaps due to stimulating a calorie restriction-like response. Further work would be necessary to confirm these properties of LXR agonists and to define the roles of LXRβ in the ageing and normal function of human skin.

WW-domain binding protein-2 (WBP-2) was cloned as an E6-associated protein (E6-AP) interacting protein and its role in steroid hormone receptor (SHR) function was investigated. We show that WBP-2 differs from other SHR coactivators, as it specifically enhanced the transactivation functions of progesterone receptor (PR) and estrogen receptor (ER alpha), whereas it had no significant effect on the androgen receptor, glucocorticoid receptor or the activation functions of p53 or VP-16. We also demonstrated that, like other well characterized coactivators, WBP-2 contains an intrinsic activation domain. Depletion of endogenous WBP-2 with small interfering RNAs indicated that normal physiological protein level of WBP-2 was required for the proper functioning of ER alpha and PR. Moreover, chromatin immunoprecipitation (ChIP) assays demonstrate the hormone-dependent recruitment of WBP-2 onto an estrogen-responsive promoter. As we initially identified WBP-2 as an E6-AP interacting protein, we investigated whether WBP-2 and E6-AP function in concert. Our data shows that WBP-2 and E6-AP each enhance PR function and when co-expressed they additively enhance the transactivation functions of PR. However, WBP-2 was also able to enhance the transactivation functions of ER alpha and PR in mouse embryonic fibroblast cells generated from E6-AP knockout mice lines, suggesting that the coactivation functions of WBP-2 was not dependent on E6-AP. The further elucidate the molecular mechanism of action of WBP-2; we dissected the functional importance of the polyproline (PY) motifs contained within the WBP-2 protein. Mutational analysis suggests that one of three PY motifs, PY3 of WBP-2 was essential for its coactivation and intrinsic activation functions. In this study, we also demonstrate that the WBP-2 binding protein, Yes-kinase associated protein 1 (YAP1) acts as a secondary coactivator of ER alpha and PR. However, the coactivation function of YAP1 is revealed only in the presence of wild-type WBP-2 and not with the PY motif 3 mutant WBP-2. This is consistent with our observations that, unlike the wild-type WBP-2, the PY motif 3 mutant WBP-2 does not interact with YAP1. Our quantitative reChIP assays demonstrates an estrogen-dependent recruitment and association of ER alpha with both WBP-2 and YAP1. The hormone-dependent recruitment of YAP1 to ER alpha responsive promoter is dependent on the physiological expression levels of WBP-2. This is consistent with, our observation that the coactivation functions of YAP1 is dependent on WBP-2, and is also in agreement with other known secondary coactivators that get recruited to SHR responsive promoter via their interaction with primary coactivators. Surprisingly, the association of WBP-2 with ER alpha and its recruitment to the ER alpha target promoter was abrogated by YAP1 knock-down, suggesting that WBP-2 and YAP1 may stabilize each other at the promoter, and consequently, are functionally interdependent. Taken together our data establish the role of WBP-2 and YAP1 as selective coactivators for ER alpha and PR transactivation pathways.

Receptores nucleares formam uma superfamília de proteínas responsáveis pela regulação da expressão de genes. Estruturalmente, são formados por três domínios: um domínio N-terminal bastante variável, um domínio altamente conservado de ligação com o DNA e um domínio C-terminal, menos conservado, denominado domínio de ligação com o ligante (LDB). Diversos experimentos mostram que a interação com o ligante afeta a estrutura e a mobilidade da hélice C-terminal dos receptores nucleares (hélice 12 do domínio de ligação com o ligante), sendo o principal mecanismo de ativação e repressão da transcrição. As primeiras estruturas de LBDs de receptores nucleares revelaram importantes diferenças entre estruturas contendo ligantes (holo) e estruturas apo, principalmente no que diz respeito a posição da hélice 12: em estruturas apo, foi observada a H12 em uma conformação aberta, expondo o sítio de ligação com o ligante, enquanto que em estruturas holo, foi observada a H12 em uma conformação fechada, dobrada sobre o corpo do LBD e envolvendo completamente o ligante. Essa diferença sugeriu um mecanismo para a entrada e saída de ligantes do sítio de ligação denominado modelo da ratoeira, entretanto, esse modelo apresenta diversas inconsistências e tem sido desacreditado. Estudos experimentais e teóricos recentes mostram que a hélice 12 é mais móvel na ausência de ligantes, entretanto, esses estudos não fornecem evidencias de que o aumento da mobilidade da está associado com o deslocamento da H12 em relação ao corpo do LBD, como sugerido pelo modelo da ratoeira. Embora esteja claro que a hélice 12 é mais móvel na ausência de ligantes, a dimensão da variação conformacional sofrida pela hélice 12 ainda não está clara. Nesse trabalho buscamos a construção de um modelo capaz de dimensionar a mobilidade da hélice 12 através da comparação direta entre simulações de dinâmica molecular e experimentos de anisotropia de fluorescência resolvida no tempo. Utilizando simulações de dinâmica molecular reproduzimos experimentos de anisotropia de fluorescência acoplando a sonda cys-flúor a hélice 12 do PPAR&gamma; para estudar sua mobilidade. Mostramos que as observações experimentais só podem ser explicadas por conformações onde a sonda fluorescente permanece presa a superfície do LBD. Foi mostrado também que curvas de anisotropia com decaimentos comparáveis com os decaimentos experimentais estão associados a pequenas variações conformacionais de hélice 12. Simulações para dois modelos de apo-PPAR&gamma; com a H12 aberta em relação ao corpo do LBD e para as estruturas cristalográficas de apo-RXR e apo-ER, onde a H12 também adota uma conformação aberta, revelaram curvas de anisotropia com decaimentos mais rápidos que os experimentais. Esses resultados implicam em um modelo onde a H12 sofre alterações conformacionais locais, não apresentando variações tão dramáticas como o proposto pelo modelo da ratoeira. / Nuclear Hormone Receptors comprise a protein superfamily responsible for regulation of gene expression. Structurally, they are composed by three domains: a variable N-terminal domain, a highly conserved DNA-binding domain (DBD), and a less conserved C-terminal domain, known as ligand binding domain (LBD). Many experiments have shown that the interaction with ligands affects the structure and the mobility of nuclear receptors C-terminal helix (LBDs Helix 12), being the main mechanism of transcription activation and repression. The first nuclear receptor LBDs structures revealed important differences between ligand bound (holo) and apo-structures concerning the position of the H12: in apo structures, H12 adopted an open conformation, exposing the ligand binding pocket, whereas in holo structures, the H12 was closed, packed over the body of the LBD, burying completely the ligand. This difference suggested a mechanism for ligand entry and exit from the binding pocket called mouse-trap model, however this model has several inconsistencies and has been discredited. Recent experimental and theoretical studies have shown that H12 is more labile in the absence of ligand, but these studies dont provide evidences that the increase in the mobility is associated with the detachment of H12 from the body of the LBD as suggested by the mouse-trap model. Although its clear that H12 is more flexible in the absence of ligands, the size of the conformational changes undergone by H12 is not yet clear. In this work we seek to construct a definitive model for the range of motions that H12 may undergo in the presence or absence of ligand using molecular dynamics simulations. Through direct comparison between molecular dynamics simulations and time-resolved fluorescence anisotropy experiments, we show that experimental observation can only be explained by conformations where the fluorescent probe is interacting with the surface of the PPAR&gamma; surface. We also show that simulations with anisotropy decay rates comparable to the experimental decay are associated with small helix 12 conformational changes. Simulations with two models of apo-PPAR&gamma; with H12 detached from the body of the LBD and with crystallographic structures of apo-RXR and apo-ER, where the H12 also is in an open conformation, display anisotropy decay rates significantly faster than the experimental ones. These results imply a model for the molecular mobility of the LBD where H12 undergoes local conformational changes and should exhibit dynamic properties less dramatic than proposed by the mouse trap model.

Receptores nucleares formam uma superfamília de proteínas responsáveis pela regulação da expressão de genes. Estruturalmente, são formados por três domínios: um domínio N-terminal bastante variável, um domínio altamente conservado de ligação com o DNA e um domínio C-terminal, menos conservado, denominado domínio de ligação com o ligante (LDB). Diversos experimentos mostram que a interação com o ligante afeta a estrutura e a mobilidade da hélice C-terminal dos receptores nucleares (hélice 12 do domínio de ligação com o ligante), sendo o principal mecanismo de ativação e repressão da transcrição. As primeiras estruturas de LBDs de receptores nucleares revelaram importantes diferenças entre estruturas contendo ligantes (holo) e estruturas apo, principalmente no que diz respeito a posição da hélice 12: em estruturas apo, foi observada a H12 em uma conformação aberta, expondo o sítio de ligação com o ligante, enquanto que em estruturas holo, foi observada a H12 em uma conformação fechada, dobrada sobre o corpo do LBD e envolvendo completamente o ligante. Essa diferença sugeriu um mecanismo para a entrada e saída de ligantes do sítio de ligação denominado modelo da ratoeira, entretanto, esse modelo apresenta diversas inconsistências e tem sido desacreditado. Estudos experimentais e teóricos recentes mostram que a hélice 12 é mais móvel na ausência de ligantes, entretanto, esses estudos não fornecem evidencias de que o aumento da mobilidade da está associado com o deslocamento da H12 em relação ao corpo do LBD, como sugerido pelo modelo da ratoeira. Embora esteja claro que a hélice 12 é mais móvel na ausência de ligantes, a dimensão da variação conformacional sofrida pela hélice 12 ainda não está clara. Nesse trabalho buscamos a construção de um modelo capaz de dimensionar a mobilidade da hélice 12 através da comparação direta entre simulações de dinâmica molecular e experimentos de anisotropia de fluorescência resolvida no tempo. Utilizando simulações de dinâmica molecular reproduzimos experimentos de anisotropia de fluorescência acoplando a sonda cys-flúor a hélice 12 do PPAR&gamma; para estudar sua mobilidade. Mostramos que as observações experimentais só podem ser explicadas por conformações onde a sonda fluorescente permanece presa a superfície do LBD. Foi mostrado também que curvas de anisotropia com decaimentos comparáveis com os decaimentos experimentais estão associados a pequenas variações conformacionais de hélice 12. Simulações para dois modelos de apo-PPAR&gamma; com a H12 aberta em relação ao corpo do LBD e para as estruturas cristalográficas de apo-RXR e apo-ER, onde a H12 também adota uma conformação aberta, revelaram curvas de anisotropia com decaimentos mais rápidos que os experimentais. Esses resultados implicam em um modelo onde a H12 sofre alterações conformacionais locais, não apresentando variações tão dramáticas como o proposto pelo modelo da ratoeira. / Nuclear Hormone Receptors comprise a protein superfamily responsible for regulation of gene expression. Structurally, they are composed by three domains: a variable N-terminal domain, a highly conserved DNA-binding domain (DBD), and a less conserved C-terminal domain, known as ligand binding domain (LBD). Many experiments have shown that the interaction with ligands affects the structure and the mobility of nuclear receptors C-terminal helix (LBDs Helix 12), being the main mechanism of transcription activation and repression. The first nuclear receptor LBDs structures revealed important differences between ligand bound (holo) and apo-structures concerning the position of the H12: in apo structures, H12 adopted an open conformation, exposing the ligand binding pocket, whereas in holo structures, the H12 was closed, packed over the body of the LBD, burying completely the ligand. This difference suggested a mechanism for ligand entry and exit from the binding pocket called mouse-trap model, however this model has several inconsistencies and has been discredited. Recent experimental and theoretical studies have shown that H12 is more labile in the absence of ligand, but these studies dont provide evidences that the increase in the mobility is associated with the detachment of H12 from the body of the LBD as suggested by the mouse-trap model. Although its clear that H12 is more flexible in the absence of ligands, the size of the conformational changes undergone by H12 is not yet clear. In this work we seek to construct a definitive model for the range of motions that H12 may undergo in the presence or absence of ligand using molecular dynamics simulations. Through direct comparison between molecular dynamics simulations and time-resolved fluorescence anisotropy experiments, we show that experimental observation can only be explained by conformations where the fluorescent probe is interacting with the surface of the PPAR&gamma; surface. We also show that simulations with anisotropy decay rates comparable to the experimental decay are associated with small helix 12 conformational changes. Simulations with two models of apo-PPAR&gamma; with H12 detached from the body of the LBD and with crystallographic structures of apo-RXR and apo-ER, where the H12 also is in an open conformation, display anisotropy decay rates significantly faster than the experimental ones. These results imply a model for the molecular mobility of the LBD where H12 undergoes local conformational changes and should exhibit dynamic properties less dramatic than proposed by the mouse trap model.

Two fundamental problems of developmental biology are the understanding of cell fate specification, and the integration of broader environmental contexts into developmental programs. While cell fate specification is largely achieved by differential gene expression programs, environmental integration relies on cellular receptors. A predominant mechanism to mediate both processes utilizes nuclear hormone receptors (NHRs). However, it remains unclear how diverse the NHR’s modes of action are in regulating gene expression. This thesis utilizes the development of the C. elegans germ line as a model system to study a novel link that integrates cell fate specification and the nutritional environment. In C. elegans, germ cell fate specification is chiefly controlled by posttranscriptional mechanisms. Furthermore, overall germline development is influenced by the animal’s nutritional status. However, it remains unknown whether germline posttranscriptional control mechanisms and germ cell fate decisions are linked to nutrition, and if so, how this link may operate in molecular terms. This thesis reports the characterization of the nuclear hormone receptor nhr-114 and its crucial functions for germline development and fertility. Depending on the tissue of expression, nhr-114 regulates overall germline organization, germ cell proliferation and oogenesis. Importantly, all aspects of nhr-114 function are linked to diet. Feeding nhr-114 mutants with a specific E. coli strain, or a tryptophan-supplemented diet significantly reduces germline development defects and sterility. Based on mutant analysis, nhr-114 was found to have overlapping functions with gld-4 cytoplasmic poly(A) polymerase (cytoPAP). This thesis provides evidence that nhr-114 may function in germ cells in a posttranscriptional manner linked to gld-4 cytoPAP. Further evidence shows that NHR-114 interacts with GLD-4 cytoPAP. Together these findings suggest that NHR-114 may control gene expression by transcriptional and posttranscriptional mechanisms in a tissue-specific manner. This thesis proposes that NHR-114 ensures the input of tryptophan to allow germline development; and that this function integrates nutritional information into the germline gene expression programs according to the environment of the worm. Therefore, NHR-114 potentially provides a direct molecular link to how a developmental program is coordinated with the nutritional status of an animal.

The gene encoding cholesterol 7α-hydroxylase (CYP7A), the rate-limiting enzyme in bile acid synthesis, is transcriptionally regulated by bile acids and hormones. Previously, we have identified two bile acid response elements (BARE) in the promoter of the CYP7A gene. The BARE II is located in nt - 149/-118 region and contains three hormone response element (HRE)-like sequences that form two overlapping nuclear receptor binding sites. One is a direct repeat separated by one nucleotide DR1 (-146-TGGACTtAGTTCA-134) and the other is a direct repeat separated by five nucleotides DR5 (-139- AGTTCAaggccGGGTAA-123). Mutagenesis of these HRE sequences resulted in lower transcriptional activity of the CYP7A promoter/reporter genes in transient transfection assay in HepG2 cells. The orphan nuclear receptor, hepatocyte nuclear factor 4 (HNF-4)1, binds to the DR1 sequence as assessed by electrophoretic mobility shift assay, and activates the CYP7A promoter/reporter activity by about 9-fold. Cotransfection of HNF-4 plasmid with another orphan nuclear receptor, chicken ovalbumin upstream promoter- transcription factor II (COUP-TFII), synergistically activated the CYP7A transcription by 80-fold. The DR5 binds the RXR/RAR heterodimer. A hepatocyte nuclear factor-3 (HNF-3) binding site (-175-TGTTTGTTCT-166) was identified. HNF-3 was required for both basal transcriptional activity and stimulation of the rat CYP7A promoter activity by retinoic acid. Combinatorial interactions and binding of these transcription factors to BAREs may modulate the promoter activity and also mediate bile acid repression of CYP7A gene transcription.

Two fundamental problems of developmental biology are the understanding of cell fate specification, and the integration of broader environmental contexts into developmental programs. While cell fate specification is largely achieved by differential gene expression programs, environmental integration relies on cellular receptors. A predominant mechanism to mediate both processes utilizes nuclear hormone receptors (NHRs). However, it remains unclear how diverse the NHR’s modes of action are in regulating gene expression. This thesis utilizes the development of the C. elegans germ line as a model system to study a novel link that integrates cell fate specification and the nutritional environment. In C. elegans, germ cell fate specification is chiefly controlled by posttranscriptional mechanisms. Furthermore, overall germline development is influenced by the animal’s nutritional status. However, it remains unknown whether germline posttranscriptional control mechanisms and germ cell fate decisions are linked to nutrition, and if so, how this link may operate in molecular terms. This thesis reports the characterization of the nuclear hormone receptor nhr-114 and its crucial functions for germline development and fertility. Depending on the tissue of expression, nhr-114 regulates overall germline organization, germ cell proliferation and oogenesis. Importantly, all aspects of nhr-114 function are linked to diet. Feeding nhr-114 mutants with a specific E. coli strain, or a tryptophan-supplemented diet significantly reduces germline development defects and sterility. Based on mutant analysis, nhr-114 was found to have overlapping functions with gld-4 cytoplasmic poly(A) polymerase (cytoPAP). This thesis provides evidence that nhr-114 may function in germ cells in a posttranscriptional manner linked to gld-4 cytoPAP. Further evidence shows that NHR-114 interacts with GLD-4 cytoPAP. Together these findings suggest that NHR-114 may control gene expression by transcriptional and posttranscriptional mechanisms in a tissue-specific manner. This thesis proposes that NHR-114 ensures the input of tryptophan to allow germline development; and that this function integrates nutritional information into the germline gene expression programs according to the environment of the worm. Therefore, NHR-114 potentially provides a direct molecular link to how a developmental program is coordinated with the nutritional status of an animal.

Progression of metazoans through different developmental programs requires temporal control that is achieved by molecules originating from endocrine tissues that diffuse throughout the whole body of the animal to coordinate program execution by activating cell specific gene expression patterns. These programs then define cascades of successive, distinct developmental stages or the choice between alternative fates for the same stage. A model for this developmental control is found in the nematode C. elegans, where environmental cues signal through insulin and TGF-beta cascades to regulate the daf-12/nuclear hormone receptor (NHR) ligand synthesis that then coordinates organism wide developmental timing and fate choice. For cell intrinsic aspects of C. elegans temporal control of development, microRNAs play an important role but their connection to organism wide endocrine control is unknown. This work shows how the DAF-12/NHR directly activates let-7 family microRNAs during the L3 stage to repress L2 stage activator hbl-1 to prevent L2 stage programs from reoccurring. The interaction of upstream transcription factors with the downstream cis-regulatory elements in promoters of the let-7 family microRNAs are further analyzed in detail and identify potential DAF-12 coregulators that might connect daf-12 endocrine signaling also to later stage developmental control. These observations are the first to integrate microRNAs into establishedendocrine signaling cascades. In addition they reveal specific details about how organism wide upstream, endocrine signaling pathways induce downstream cell intrinsic changes of gene expression and developmental progression. This work postulates a "molecular switch" that actively drives stage transitions, consisting of a NHR that directly activates microRNAs to actively repress mediators of old stages while directly activating translation of protein coding genes mediating the new stage.

<p> The liver X receptors (LXRs) are members of the nuclear hormone receptor (NHR) superfamily of transcription factors and are activated by oxysterols. As such, LXRs act as "cholesterol sensors" and play an integral role in cholesterol homeostasis by modulating the expression of genes involved in lipid transport and metabolism as well as inflammation. </p> <p> This thesis begins by describing the modulation of LXR transactivation by PKC. Specifically, transactivation by LXRα is decreased upon activation of PKC signalling pathways as assessed by LXR reporter gene analysis and endogenous target gene expression. These findings reveal a mode of regulation of LXRα that may be relevant to disease conditions where aberrant PKC signalling is observed. </p> <p> The second and third part of the thesis turns the attention to the role of LXR in human airway smooth muscle (hASM), a crucial effector cell in asthma progression. For the first time, research described here indicates that primary human ASM cells express functional LXRs. Moreover, LXR target genes ABCA 1 and ABCG I were highly induced upon the addition of LXR agonists leading to enhanced cholesterol efflux to apoAI and HDL, a process dependant entirely on ABCA I. Furthermore, activation of LXR inhibited the expression of multiple cytokines in response to inflammatory mediators and inhibited the proliferation and migration of hASM cells, two important processes that contribute to the airway remodelling observed in the asthmatic lung. </p> <p> This body of work suggests that modulation of LXR offers prospects for new therapeutic approaches in the treatment of asthma. Furthermore, it establishes a critical role for ABCA 1 in lipid transport in ASM cells and suggests that dysregulation of cholesterol homeostasis in these cells may be important. These findings have broad implications in the association of hypercholesterolemia and AHR and places LXR at the forefront of novel therapeutic avenues to treat inflammatory lung disease. </p> / Thesis / Doctor of Philosophy (PhD)