Unproductive lakes are one of few natural landscape compartments with net release of carbon to the atmosphere. Lakes also generally decrease the net terrestrial carbon uptake, since most of the CO2 production in unproductive lakes are derived from organic carbon produced on land (e.g. in forests). High latitude lakes are predicted to be particularly affected by the global climate change. The carbon cycling in these lakes and their role in the landscape are therefore important to study. In this thesis, carbon turnover processes were studied in two lakes above the arctic circle (Lake Diktar-Erik and Lake Merasjärvi) in year 2004 and 2005. Both lakes were net heterotrophic, with large variations in CO2 concentrations both on shorter (30min) and longer (24h) time-scales. The pelagic habitat supported a major part of the net production of CO2, with larger dynamics in the CO2 production than the sediments. The CO2 variations of the surface water were related to respiration of allochthonous organic carbon, and were affected by the concentration and quality of the DOC, as well as the whole lake water temperatures, and vertical water movements. The emission of CO2 from Lake Merasjärvi was measured with the eddy covariance tech­nique. The results showed that the gas transfer rate during moderate winds were higher than expected, causing the two most commonly used models to underestimate the long term fluxes of CO2 from the lake. Taken together, the results of the thesis show that the studied lakes contributed to bring terrestrial organic carbon back into the atmosphere, driven by a substantial internal CO2 production based on mineralization of allochthonous organic carbon. Major results are that the eddy covariance technique indicated that commonly used models tend to underestimate the net release rate of CO2 from lakes to the atmosphere, and that the lake CO2 dynamics can be the results of interactions between biogeochemical and physical processes in the lake water.

The Arctic Region is currently experiencing an amplified warming if compared to the rest of the world. The soils in this region store approximately half of the global soil organic carbon (OC), mainly locked in the permanently-frozen ground (permafrost). This carbon sink is sensitive to global warming meaning that the predicted warming will likely increase the thaw-release of this ‘old’ carbon. However, what happens to this remobilized OC once it is transported to the Arctic Ocean, including the potential conversion to greenhouse gasses causing a positive feedback to climate warming, remains unclear. In this work, we further investigate the fate of terrestrial derived OC (terrOC) in the Eurasian Arctic Region. The key findings of this work are: • Glycerol dialkyl glycerol tetraethers (GDGTs) and bacteriohopanepolyols (BHPs) are present in marine sediments of the Eurasian Arctic Region and the associated Branched and Isoprenoidal tetraether (BIT) and Rsoil indices can be used to trace terrOC in marine realm. However, a slight modification in the Rsoil index is suggested (R’soil). • Analyses indicate that the behaviour of BIT is largely controlled by a marine GDGT contribution while the R’soil index is mainly controlled by the removal of soil marker BHPs. Although both indices suggest a non-conservative behavior for the terrOC, this leads to differences in the estimations for the percentage terrOC present. A multi-proxy approach is essential since the use of a single-proxy approach can lead to over/under estimation.• Comparison of BIT and 13Csoc indices across the East Siberian Shelf indicates that the BIT index is possibly reflecting a predominantly fluvial input while 13Csoc represents a mixed fluvial and coastal erosion input.• The macromolecular terrOC composition varies along a west-east Eurasian Arctic climosequence and is mainly controlled by the river runoff of surface derived terrOC and wetland coverage (sphagnum vs. higher plants) but is not affected by the presence/absence of continuous permafrost. • The phenols/(phenols+pyridines) ratio was suggested as a proxy to trace terrOC at the macromolecular level along the Kolyma River-East Siberian Sea transect. The results indicate a non-conservative behavior of the macromolecular terrOC comparable to the bulk of the terrOC.All molecular analyses/based proxies used showed that the remobilized terrOC in the Eurasian Arctic region behaves non-conservatively potentially causing a positive feedback to global climate change.

No description available.

Master of Science / Department of Agronomy / Charles W. Rice / The sequestration of atmospheric CO[subscript]2 into soil through no-till management is an economic and viable method for reducing greenhouse gases, but maintaining no-till practices are necessary to sequester C in the long-term. Our study focused on the effects of a single tillage operation on soil organic C and N and aggregation in no-till soils when no-till practices are immediately resumed after tillage. Three locations in western Kansas were selected that had been in continuous dryland no-till for at least 5 years – Wallace, Tribune, and Spearville. Tillage treatments were administered in 2004 and consisted of no-till (NT), disk plow (DP), sweep plow (SwP), and chisel plow (CP). Treatments were arranged in a randomized complete block design with four replications. Soil samples were taken at 0-5, 5-15, and 15-30 cm depths. Composite samples were taken from each block prior to tillage and tested for whole soil organic C and N. Further soil samples were collected in spring 2005 at approximately nine months after tillage (MAT) and again in fall 2005 at approximately 12 MAT and tested for whole soil organic C and N and aggregate size distribution. Bulk density was measured for each plot and depth prior to sampling at 12 MAT. Twelve MAT samples were also tested for aggregate-associated C and N. The DP tillage had a greater C concentration than NT and CP when averaged over depth and time, but C mass did not vary between tillage systems. Changes in whole soil C and N over time varied by location, but the differences were similar between tillage treatments. Tillage treatments DP and SwP also had a greater mass of macroaggregate (250-1000 [Mu]m) associated C relative to CP (but not to NT) for Wallace in the surface 0-5 cm at 12 MAT. No other differences between tillages in aggregate-associated C were observed. A single tillage event did not have a significant impact on aggregate size distribution. The greatest amount of aggregate-associated C and N existed in the large microaggregate (53-250 µm) fraction. Changes in aggregate distribution or aggregate-associated C or N did not directly correlate to changes in whole soil C and N. We therefore conclude that a single tillage operation using these implements will not result in a measurable loss in sequestered C over time for dryland soils in a semi-arid climate such as western Kansas.

Due to growing global concern regarding climate change and CO2 emissions, the use of soil as a potential carbon (C) sink has become increasingly recognised as a potential mitigation measure. Global agricultural soil has the estimated capacity for sequestering C at around 20 to 30 Pg (Peta grams) of C over the next 50 to 100 years if correct land management practises are applied. The benefits on improving soil C levels are not limited to reduced CO2 emissions and climate change mitigation however. It is widely accepted that improved organic C levels provide an array of positive benefits, including enhanced soil fertility, soil structure and water holding capacity and generally improve soil biodiversity and associated ecosystem services. Therefore, the pursuit of increasing soil organic carbon (SOC) levels in agricultural soil could create a win-win-win scenario. To improve SOC levels in agriculture, there are two key components that need to be fully effective. The first being the scientific understanding of SOC and its responses to different farming practices and systems. Secondly, the policy and advisory environment needs to be effective and conducive, promoting those practices and systems which are proven to increase SOC levels. This research therefore, explores these two components by conducting a series of investigations into current on-farm practices for managing SOC, the current policy and legislation structure, the quality and extent of farm-facing SOC related advice, and the scope for improving SOC levels through farm management practices and agri-environmental policy. A critical review and synopsis of global, European and national policy and advice was conducted to identify those policies that encourage the improvement of SOC and to highlight those areas where SOC does not currently feature as a management issue. Whilst soil and SOC do not feature heavily at the European or national level, there are a number of mechanisms which have the potential to improve SOC levels through their ability to reach a large audience of farmers and via the promotion of suitable management practices. The review of current policy was supplemented by interviews with those responsible for providing advice to farmers and farmers themselves. The interviewed farmers and advisors were relatively engaged with the subject of SOC although the results demonstrated that there was scope to improve current levels of understanding and practice. The currently policy environment at the national level, was not, in general, creating changes in management practices with those interviewed, so any potential enhancement of SOC that the policy mechanisms had the ability to create, were being missed. A review of the scientific literature regarding SOC and data gathered from subsequent soil sampling under a range of farming practices has allowed for the exploration of the potential and realisation to increase SOC levels through various management approaches. Practices which promote an increased use of organic matter amendments, reduced tillage systems and organic farming systems were of particular focus; with all three demonstrating the potential in improve SOC levels. Combining the social and natural science aspects of the issue of SOC has allowed for an exploration of the potential approaches to improve SOC within English agriculture. Critically, research and development of the subject needs to be improved to further the scientific understanding of SOC in relation to farming practices and land use. Development is also required of current national policy, in particular agri-environment schemes (AES), which despite reaching a wide farming audience, would appear to create minimal management changes and therefore has minimal impact on improving SOC levels. The two sides of this issue, the social and the natural sciences, must be addressed together otherwise a full understanding and an appropriate approach forward cannot be reached. This is why an interdisciplinary approach has been viewed as a suitable research framework for this thesis. The concluding aim of this work is to present a ‘best practice approach’ in terms of physically improving SOC levels by enhancing current advisory pathways and developing an effective policy environment.

Inland waters receive substantial amounts of organic carbon from adjacent watersheds. Only about half of the carbon exported from inland waters reaches the oceans, while the remainder is lost en route. This thesis identifies flocculation as an important and significant fate of carbon in the boreal landscape. Flocculation reallocates organic carbon from the dissolved state into particles which are prone to settle. Thus, flocculation relocates organic carbon from the water column to the sediment. The dissolved organic carbon (DOC), mainly originating from terrestrial sources, in a set of Swedish lakes was found to determine the extent of sedimentation of particulate organic carbon. A major fraction of the settling particles were of allochthonous origin. This implies that allochthonous DOC was the precursor of the settling matter in these lakes. The gross sedimentation was of the same magnitude as the evasion of carbon dioxide to the atmosphere. Sunlight, especially in the photosynthetically active region, stimulated flocculation of DOC. The effect of light appeared to involve a direct photochemical reaction. Iron was involved in the flocculation but it could not be unravelled whether the iron catalyzes the flocculation or just co-precipitates with the settling matter. Microbial activity was identified as the main regulator of the flocculation rates. Accordingly, alteration of temperature, oxygen concentration and pH did not affect flocculation only indirectly, via their effects on microbial metabolism. A comparison of fluorescence characteristics of organic matter collected in sediment trap and in the sediment surface layer revealed that autochthonous organic carbon was preferentially lost in the sediments while allochthonous matter increased. The recalcitrant nature of the flocculated matter could favour sequestration of this matter in the lake sediment. Hence, the lakes will act as sinks of organic carbon due to a slower mineralization of the flocculated matter in the sediments.

Thesis (MSc)--Stellenbosch University, 2015. / ENGLISH ABSTRACT: Inorganic fertilizer applications are common practice in commercial agriculture, yet not much is known regarding their interaction with organic matter and soil biota. Much research has been done on the effect of inorganic N on forest litter decomposition, yet very little research has focused on the effect of inorganic fertilizers on crop litters and, to our knowledge, none on composted organic matter. Furthermore none of the research has been done in South Africa. The main aim of this research project was to determine the effect of inorganic fertilizer applications on the decomposition of selected organic matter sources commonly used in South African agriculture and forestry. Two decomposition studies were conducted over a 3-month period, one on composts and the other on plant litters, using a local, sandy soil. In the first experiment a lower quality compost, compost A (C:N ratio, 17.67), and higher quality compost, compost B (C:N ratio, 4.92) was treated with three commercially used fertilizer treatments. Two were typical blends used for vegetable (tomato and cabbage) production: tomato fertilizer (10:2:15) (100 kg N, 20 kg P, 150 kg K per ha) and cabbage fertilizer (5:2:4) (250 kg N, 100 kg P, 200 kg K per ha). The third fertilizer blend, an equivalent mass application of N and P applied at 150 kg of each element per ha, is more commonly used in pastures. In the second experiment, five commonly encountered crop and forestry litters, namely kikuyu grass, lucerne residues, pine needles, sugar cane trash and wheat straw, were selected to represent the labile organic matter sources. The litters were treated with the tomato and cabbage fertilizer applications rates. Both decomposition experiments were conducted under ambient laboratory conditions at field water capacity. Decomposition rates were monitored by determining CO2 emissions, DOC production, β-glucosidase and polyphenol oxidase activity (PPO). At the start and end of decomposition study, loss on ignition was performed to assess the total loss of OM. Based on the results obtained from these two experiments, it was concluded that the addition of high N containing inorganic fertilizers enhanced the decomposition of both composted and labile organic matter. For both compost and plant litters, DOC production was greatly enhanced with the addition of inorganic fertilizers regardless of the organic matter quality. The conclusion can be made that inherent N in organic matter played a role in the response of decomposition to inorganic fertilizer application with organic matter low in inherent N showing greater responses in decomposition changes. For labile organic matter polyphenol and cellulose content also played a role in the responses observed from inorganic fertilizer applications. / AFRIKAANSE OPSOMMING: Anorganiese kunsmis toedieningss is algemene praktyk in die kommersiële landbou sektor,maar nog min is bekend oor hul interaksie met organiese materiaal en grond biota. Baie navorsing is reeds oor die uitwerking van anorganiese N op woud en plantasiereste se ontbinding gedoen. Baie min navorsing het gefokus op die uitwerking van anorganiese kunsmis op die gewasreste en tot ons kennis, is daar geen navorsing gedoen op die invloed van anorganiese kunsmis op gekomposteer organiese material nie. Verder is geeneen van die navorsing studies is in Suid-Afrika gedoen nie. Die hoofdoel van hierdie navorsingsprojek was om die effek van anorganiese kunsmis toedienings op die ontbinding van geselekteerde organiese materiaal bronne, wat algemeen gebruik word in die Suid-Afrikaanse landbou en bosbou, te bepaal. Twee ontbinding studies is gedoen oor 'n 3-maande-tydperk, een op kompos en die ander op die plantreste, met die gebruik van 'n plaaslike, sanderige grond. In die eerste eksperiment is ‘n laer gehalte kompos, kompos A (C: N verhouding, 17.67), en 'n hoër gehalte kompos, kompos B (C: N verhouding, 4.92) met drie kommersieel anorganiese bemesting behandelings behandel. Twee was tipiese versnitte gebruik vir die groente (tamatie en kool) produksie: tamatie kunsmis (10: 2:15) (100 kg N, 20 kg P, 150 kg K per ha) en kool kunsmis (5: 2: 4) (250 kg N, 100 kg P, 200 kg K per ha). Die derde kunsmis versnit was 'n ekwivalente massa toepassing van N en P van 150 kg van elke element per ha, wat meer algemeen gebruik word in weiding. In die tweede eksperiment was vyf algemeen gewas en bosbou reste, naamlik kikoejoegras, lusern reste, dennenaalde, suikerriet reste en koring strooi, gekies om die labiele organiese materiaal bronne te verteenwoordig. Die reste is met die tamatie en kool kunsmis toedienings behandel. Beide ontbinding eksperimente is uitgevoer onder normale laboratorium toestande by veldwaterkapasiteit. Ontbinding tempo is deur die bepaling van die CO2-vrystellings, opgelosde organiese koolstof (OOK) produksie, β-glukosidase en polifenol oksidase aktiwiteit (PPO) gemonitor. Aan die begin en einde van ontbinding studie, is verlies op ontbranding uitgevoer om die totale verlies van OM te evalueer. Gebaseer op die resultate van hierdie twee eksperimente, was die gevolgtrekking dat die toevoeging van hoë N bevattende anorganiese bemestingstowwe die ontbinding van beide komposte en plant reste verhoog. Vir beide kompos en plantreste word OOK produksie verhoog met die toevoeging van anorganiese bemesting, ongeag van die organiese materiaal gehalte. Die gevolgtrekking kan gemaak word dat die inherente N in organiese materiaal 'n rol gespeel het in die reaksie van ontbinding op anorganiese bemesting toedienings met die grootste reaksie in organiese material laag in inherente N. Vir labiele organiese material het polifenol en sellulose inhoud ook 'n rol gespeel in die reaksie waargeneeming op anorganiese bemesting.

<p>The objective of this thesis is to improve the understanding of what processes and mechanism affects the distribution of polychlorinated biphenyls (PCBs) and organic carbon in coastal sediments. Because of the strong association of hydrophobic organic contaminants (HOCs) such as PCBs with organic matter in the aquatic environment, these two entities are naturally linked. The coastal environment is the most complex and dynamic part of the ocean when it comes to both cycling of organic matter and HOCs. This environment is characterised by the largest fluxes and most diverse sources of both entities. A wide array of methods was used to study these processes throughout this thesis. In the field sites in the Stockholm archipelago of the Baltic proper, bottom sediments and settling particulate matter were retrieved using sediment coring devices and sediment traps from morphometrically and seismically well-characterized locations. In the laboratory, the samples have been analysed for PCBs, stable carbon isotope ratios, carbon-nitrogen atom ratios as well as standard sediment properties. From the fieldwork in the Stockholm Archipelago and the following laboratory work it was concluded that the inner Stockholm archipelago has a low (≈ 4%) trapping efficiency for freshwater-derived organic carbon. The corollary is a large potential for long-range waterborne transport of OC and OC-associated nutrients and hydrophobic organic pollutants from urban Stockholm to more pristine offshore Baltic Sea ecosystems.</p><p>Theoretical work has been carried out using Geographical Information Systems (GIS) and statistical methods on a database of 4214 individual sediment samples, each with reported individual PCB congener concentrations. From this work it was concluded that the continental shelf sediments are key global inventories and ultimate sinks of PCBs. Depending on congener, 10-80% of the cumulative historical emissions to the environment are accounted for in continental shelf sediments. Further it was concluded that the many infamous and highly contaminated surface sediments of urban harbours and estuaries of contaminated rivers cannot be of importance as a secondary source to sustain the concentrations observed in remote sediments. Of the global shelf PCB inventory < 1% are in sediments near population centres while ≥ 90% is in remote areas (> 10 km from any dwellings). The remote sub-basin of the North Atlantic Ocean contains approximately half of the global shelf sediment inventory for most of the PCBs studied.</p>

Three studies were completed to investigate the influence of mineral assemblage on soil organic carbon (SOC) cycling and pedogenesis in forest soils. Two studies utilized a lithosequence of four parent materials (rhyolite, granite, basalt, limestone/volcanic cinders) under Pinus ponderosa, to explicitly quantify the contribution of parent material mineral assemblage to the character of the resulting soil. The first study explored variation in pedogenesis and elemental mass loss as a product of parent material through a combination of quantitative X-ray diffraction and elemental mass balance. Results indicated significant differences in degree of soil development, profile characteristics, and mass flux according to parent material.The second study utilized the same lithosequence of soils, but focused on organic C cycling. This study explored variation in SOC content among soils of differing mineralogy and correlations among soil physiochemical variables, SOC content, soil microbial community composition and respiration rates. Metal-humus complex and Fe-oxyhydroxide content emerged as important predictors of SOC dynamics across all parent materials, showing significant correlation with both SOC content and bacterial community composition. Results indicated that within a specific ecosystem, SOC dynamics and microbial community vary predictably with soil physicochemical variables directly related to mineralogical differences among soil parent materials.The third study focused specifically on the influence of goethite and gibbsite on dissolved organic matter characteristics and microbial communities which utilize DOM as a growth substrate. Iron and aluminum oxides were selected for this study due to their wide spread occurrence in soils and their abundance of reactive surface area, qualities which enable them to have a significant effect on SOC transported through forest soils. Results indicated that exposure to goethite and gibbsite surfaces induces significant differences in DOM quality, including changes in thermal properties, molecular structure, and concentrations of P and N. Investigation of the decomposer communities indicated that exposure to goethite and gibbsite surfaces caused significant differences in microbial community structure.These investigations emphasize the important role of mineral assemblage in shaping soil characteristics and regulating the cycling of C in soils, from the molecular scale to the pedon scale.

Upland environments are important sources of mercury (Hg) to downstream wetlands and water bodies. Hydrology is instrumental in facilitating Hg transport within, and export from watersheds. Two complementary studies were conducted to assess the role hydrological processes play in controlling Hg mobility and transport in forested uplands. A field study compared runoff and Hg fluxes from three, replicate hillslope plots during two contrasting spring snowmelt periods, in terms of snowpack depth and timing. Hillslope Hg fluxes were predominately flow-driven. The melting of soil frost significantly delayed a large portion of the Hg flux later into the spring following a winter with minimal snow accumulation. A microcosm laboratory study using a stable Hg isotope tracer applied to intact soil cores investigated the relative controls of soil moisture and precipitation on Hg mobility. Both hydrologic factors control the mobility of contemporary Hg; with greatest Hg flushing from dry soils under high-flow conditions.