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Certos ambientes subterrâneos da Terra possuem acumulados, naturalmente, compostos de radionuclídeos de longa vida, como 238U, 232Th 40K, próximo à presença de água líquida. O mesmo é esperado que aconteça em corpos planetários, no Sistema Solar, que possua quantidades apreciáveis de água. Nestes ambientes radioativos naturais, a radiólise da água produz espécies químicas e desequilíbrios químicos importantes para a vida. Apesar da proposta do decaimento radioativo como fonte alternativa de energia para sistemas vivos existir há mais de trinta anos, isto se mostrou realmente concreto após descoberta de um ecossistema peculiar cuja sobrevivência é dependente de espécies químicas produzidas por radiólise aquosa. Neste trabalho, avaliamos e quantificamos os desequilíbrios químicos gerados localmente pela radiólise aquosa e a possível contribuição destes para a emergência da vida, tendo como referência os estudos em ambientes de fontes hidrotermais alcalinas, consideradas promissores ambientes para esse evento. Também foram avaliados seus efeitos na habitabilidade de possíveis ambientes análogos na lua gelada Europa. Procuramos quantificar a diversidade química formada nessas condições e a associar aos desequilíbrios parâmetros termodinâmicos. As estimativas realizadas para ambientes radioativos na Terra primitiva apontaram para a similaridade entre o desequilíbrio causado por radiólise aquosa e o encontrado em fontes hidrotermais alcalinas. Confirmando e detalhando a análise preliminar que motivou o trabalho. Não obstante, considerando Europa, chegamos a valores de densidade de células do extremófilo Candidatus Desulforudis audaxviator que sobreviveriam em um conjunto de candidatos a análogos geológicos de possível ambiente radioativo na lua gelada. A partir deste estudo pudemos analisar o potencial para a emergência da vida e de protometabolismos nestes ambientes radioativos naturais na Terra primitiva, bem como levantar parâmetros mensuráveis para futuras missões espaciais que buscam vida ou habitabilidade em Europa. / Certain subterranean environments of the Earth has naturally accumulated compounds of longlived radionuclides, such as 238U, 232Th 40K, near the presence of liquid water. The same is estimated in wet planetary bodies in the Solar System. In these natural radioactive environments, water radiolysis produces chemical species and chemical disequilibria, which are important for life. Although the proposal of radioactive decay as an alternative source of energy for deep biospheres has existed for more than thirty years, this proved to be really feasible after the discovery of a peculiar ecosystem whose survivor is dependent on chemical species produced by water radiolysis. In this work, we evaluate and quantify the chemical disequilibria generated locally by water radiolysis and the possible contribution of these to the emergence of life, having as reference the studies alkaline hydrothermal vents, which is considered highly promising environment for this event. It is also evaluated their effects on the habitability of possible analogous environments on the Jupiter icy moon Europa. It was aimed to quantify the chemical diversity formed under these conditions and to calculate disequilibria using thermodynamic parameters. The estimates made for natural radioactive environments in early Earth pointed to the similarity between the disequilibrium caused by water radiolysis and those found in alkaline hydrothermal vents. What confirms and details the preliminary analysis that motivated this work. In addition, it was calculated values for cell density of the Candidatus Desulforudis audaxviator extremophile, that would survive in Europa comparable to the in situ analysis of some terrestrial radioactive environments, using a set of possible scenarios for possible local natural radioactive environments. From this study, we were able to analyze the potential for the emergence of life and protometabolisms in these natural radioactive environments in early Earth, as well as to provide measurable parameters for future space missions that seek for life or habitability in Europa.

Although the association between social inequality and poor adult health is well established, the mechanisms by which inequality is translated into poor adult health are less clear. Increasingly, evidence suggests that many adult health problems and health disparities have their origins in early life; the developmental origins of health and disease (DOHaD) hypothesis provides an explanatory mechanism linking adverse early life conditions with permanent structural or functional changes that increase the risk for disease. This hypothesis is consistent with bioarchaeological research noting reduced lifespan among individuals exhibiting signs of childhood stress. The principal aim of this dissertation is to contribute a bioarchaeological perspective to health disparities research by investigating how health disparities can be measured and understood in the past. This study focuses on early life conditions as a source of adult health disparity by examining a skeletal sample for the association between childhood stress and adult longevity; the relationship between childhood stress and the presence of adult health conditions; and sex, ancestry, and regional differences in these relationships. The study sampled 830 age-documented, U.S. born African American males and females and Euro-American males from the Terry and the Hamann-Todd anatomical collections, representing socially-marginalized individuals from the late 19th- to early 20th centuries. Enamel hypoplasia, femoral length, and vertebral neural canal diameters represented childhood stress; skeletal fractures, tibial periostosis, and the diseased, missing, and filled tooth index represented adult health. Longevity was modeled with Kaplan-Meier survival curves and adult health relationships were modeled with logistic regression. Additionally, cause of death data from historic health department publications and the study sample morgue records were examined for disparity in the epidemiological transition from infectious to degenerative cause of death. The study found mixed results for all analyses. There was no reduction in longevity for the presence of enamel hypoplasia, short femoral length, or reduced thoracic neural canal diameter. African American males had statistically significant reduced longevity for small lumbar vertebral neural canal diameters. African American males from the Hamann-Todd Collection and Euro-American males from both collections had significant relationships between vertebral neural canal diameters and adult conditions; these relationships varied among the groups but in most cases demonstrated reduced odds for having the adult condition for individuals with smaller canal diameters. African American females had no differential survival or relationships between variables over the lifecourse. All groups except for the Terry Collection Euro-American males continued to have more infectious disease deaths than degenerative disease deaths. The study results contribute to disparities research by demonstrating that the consequences of childhood stress varied by sex and ancestry and by demonstrating within-population variation in timing of the epidemiological transition. Additionally, the study results support the contention of greater male sensitivity to environmental conditions and contributes evidence supporting the DOHaD hypothesis.

Philosophiae Doctor - PhD / Nigeria is peopled by ethnically and linguistically diverse populations of which little were known until the last few millennial. The absence of major natural geographical barrier increases the possibility of the populations being affected by the same demographic events. The aim of this thesis was to ascertain the genetic variations and demographics in five major Nigerian populations using Y-markers. This was done by determining the genetic structures of the Afro-asiatic speaking Hausa (n=78) of Northern Nigeria and the Niger Congo speaking populations of Igbo (n=119), Yoruba (n=238), Bini (n=13) and Ijaw (n=15) of Southern Nigeria all spread over 22 geographical origins and four (North, South east, south west and South south) geographical regions. They were compared with more than 2000 individuals from 46 populations of 20 other African and Middle Eastern countries, in published literature. The Scientific Working Group on DNA Analysis Methods (SWGDAM) recommended Y-Short Tandem Repeats (STRs) and nine Y-Single Nucleotide Polymorphisms (SNPs) haplogroups were typed with multiplex Polymerase Chain Reaction (PCR), Restriction Fragment Length Polymorphisms (RFLP) and High Resolution Melting (HRM). Summary statistics and measures of diversity were determined. Population structure was assessed with Population Pairwise Differences, hierarchical Analysis of Molecular Variance, Multidimensional scaling and correspondence analysis plots. Mantel’s test was used to assess the correlation of genetic distances with geographic distances. Demographic inferences were assessed with lineage based Network reconstruction, Spatial autocorrelation plots, effective migrants per population and both Inter and Intra-lineages Times to the Most Recent Common Ancestor (TMRCA). The patterns of diversity of the Y-markers showed a North-South gradient and a notable sub-structure among the Hausa populations. The Niger-Congo speakers displayed rare presence of haplogroups R and E1b1b but a preponderance of E1b1a7. Overall, the Y markers showed high diversities and significant genetic sub-structure within the Hausa populations of Nigeria with stronger linguistic than geographical bias. The demographic evaluations gave credence for genetic validation of both historical records and archeological findings among these Nigerian populations. These populations showed stronger affiliations with other sub-Saharan African populations rather than with North African or Middle Eastern populations, lacking evidence for the Middle Eastern origins of the male founders of these populations. Finally, the contribution of these Nigerian dataset would greatly enhance the Africa meta-population on the YHRD with more than 274 new haplotypes of forensic estimation significance.

Postmodern museums challenge many of the more traditional concepts regarding what constitutes a museum. Concepts such as museums being places of contemplation or places that exhibit collected artefacts are no longer considered to be the primary attributes of museums. The idea of the museum as a collection of knowledge is beginning to take ground even though more traditional ideas are not necessarily rejected. As the focus has shifted towards the experience of the visitor in terms of education and entertainment, the display of artefacts supported by text is no longer considered to be essential to providing a meaningful experience for the visitor. Photography and film are now widely used to communicate information or ideas in museums. Less widely used, particularly in South Africa, are new media such as computer games and virtual reality. New media, because of its ability to engage people through its interactive nature provides a valuable communication tool for the museum environment. A comparison between two South African sites, The Maropeng Visitor Centre and The Origins Centre, reveals the value of new media for museums and the value of museums for education in the society at large. / Dissertation (MA)--University of Pretoria, 2013. / Visual Arts / unrestricted

This poetry collection moves from the narrator’s childhood in the marshes of Canada to her coming of age in a new, southern swamp in South Florida. Many of the poems use free verse as well as fairly recent poetic forms like the Golden Shovel and the Pecha Kucha. Others rely on wordplay and nonce forms. Influenced by Hector Veil Temperly, Matthew Zapruder, Dorothea Lasky, Laura Kasischke and Anne Carson, the poems often employ simple language in stream of consciousness, and oscillate between lyric and narrative. These poems are feverish creations inspired by the oracular tradition and induced by the psychic crush of modern life: depression of the body and mind, cultural paranoia, and the decline of nature. The reader is privy not only to the personal biography of the narrator, but also to the inner workings of the narrator’s mind as it encounters and interprets the world.

The Sutherland group recently demonstrated that from a mixture of oligoribonucleotide-2'- or 3'-phosphates the latter is chemoselectively acetylated. This is shown to mediate a template-directed ligation to give predominantly 3',5'-linked RNA that is acetylated at the ligation junction (acetyl-RNA). It was suggested that RNA emerged prebiotically via acetyl-RNA and also is proposed to have favourable genotypic properties due to greater propensity to form duplex structure. To study the properties of acetyl-RNA, their synthesis by solid-phase chemistry was required and described is the design of a 2'/3'-O-acetyl orthogonal protecting group strategy. Key to the orthogonal protecting group strategy is the use of (2-cyanoethoxy)carbonyl for the protection of the nucleobase exocyclic amines and a photolabile solid-phase linker group that allowed partial on-column deprotection. The synthesis of the 2'/3'-O-acetyl and 2'/3'-O-TBDMS phosphoramidites, in addition to preparation of a photolabile solid-phase support, are described. With the materials to hand the procedures for an automated synthesis of acetyl-RNA were optimised and several acetyl-RNA oligonucleotides were synthesised. The duplex stability of acetyl-RNA with up to four sites of 2'-O-acetylation were assessed by UV melting curve analysis. Remarkably, the acetyl groups caused a consistent decrease in Tm of between 3.0-3.2 °C. Thermodynamic parameters indicated a decrease in duplex stability that was consistent with a decrease in hydration of the minor groove resulting in a reduction of the stabilising hydrogen bonding network. The stability of a tetraloop was also found to decrease on acetylation. The acetylated- tetraloop it is able to form duplex at lower concentrations than the natural tetraloop. Additionally, it is more stable at high concentrations, indicating that acetyl-RNA favours duplex over other secondary structure. These properties are considered to give acetyl-RNA competitive advantage for their non-enzymatic replication. Aminoacylation of RNA is an important process in modern biology but the intermediacy of aminoacyl-adenylates is considered to be prebiotically implausible. A potentially prebiotic aminoacylation of nucleoside-3'-phosphates, selective for the 2'-hydroxyl, is presented. However, it was thought the aminoacylation yields could be improved and so a search for an alternative activator was conducted. Oligoribonucleotide-3'-phosphates were exposed to the aminoacylation conditions and selective aminoacylation at only the 2'-hydroxyl of the 3'-end was observed. In particular, the aminoacylation of a trimer lends support to Sutherland’s theory of a linked origin of RNA and coded peptide synthesis.

The 'RNA World' hypothesis states that RNA was the first living system on the primitive Earth, where it carried out dual genotypic and phenotypic functions. Therefore, RNA must have self-assembled by purely chemical means from small prebiotic feedstock molecules. A plausible demonstration of the synthesis of RNA with the natural [5'→3'] phosphodiester linkage, and its self-replication has not been achieved so far. Some have speculated a 'simpler' informational polymer preceded it, and biology based on this polymer subsequently 'invented' RNA. The structurally simpler L-α-threofuranosyl nucleic acid (TNA) has been proposed as a primordial ancestor to RNA. A study into the potential self-assembly of TNA nucleotides was carried out. It is shown that as a direct result of TNA's structural simplicity, its generational chemistry is more difficult than RNA. The tetrose aminooxazolines are unstable under the conditions of its formation. The tetrose anhydronucleosides efficiently incorporate phosphate to form activated tetrose cytidine-2',3'-cyclic phosphates, but with the wrong stereochemistry. Strong support for the 'RNA world' hypothesis came from a report in 2009 of the prebiotic synthesis of activated pyridimine ribonucleoside-2',3'-cyclic phosphates. Oligomerisation studies were carried out on these activated monomers with various catalysts, and NMR studies were carried out to determine the aspects of their reactivity. It was found that only short oligomers are formed. However, nucleoside-2',3'-cyclic phosphates were found to selectively hydrolyse to a 2:1 mixture of 3' and 2'-monophosphates, and this observation was considered as etiologically relevant. Nucleoside-2' and 3'-monophosphates cyclise back to nucleoside-2',3'-cyclic phosphates upon phosphate activation, and so cannot be considered as direct candidates for oligomerisation. A chemistry that selectively uses the nucleoside-3'-phosphate for the synthesis of RNA, and recycles the unwanted 2'-phosphate would be highly desirable. Thus, a regio- and chemoselective reaction that selectively acetylates monomer and oligomer nucleoside-3'-phosphates at the 2'-hydroxyl in water is presented. Nucleoside-2'-phosphates are shown to acetylate less efficiently, and show a greater propensity to recyclise back to nucleoside-2',3'-cyclic phosphates. Purine nucleotides were also found to acetylate better than pyrimidines. This potentially primordial protecting group chemistry approach towards the prebiotic synthesis of RNA is conceptually novel, and has the potential to give a natural [5'→3'] phosphodiester linkage isomer. It is considered as a major step towards solving the long-standing problem of non-enzymatic self-replication of RNA.

L'instabilité chromosomique, marque des cellules tumorales, peut trouver sa source dans un défaut d'initiation de la réplication. Ceci a été illustré chez la levure Saccharomyces cerevisiae et concorde avec l'observation de mutations de régulateurs de la transition G1/S dans un grand nombre de tumeurs. Toutefois, les mécanismes par lesquels cette instabilité survient n'ont pas encore été clairement définis. Pour résoudre cette question, nous avons utilisé le mutant de levure cdc6-1 où la formation des complexes pré-réplicatifs est graduellement affectée avec l'augmentation de la température. Nous avons mis en évidence que l'allongement de la durée de la réplication qui en suit induit des cassures de l'ADN (DSB) seulement à l'entrée en mitose. Par combinaisons de mutants, nous avons vu que la condensation des chromosomes est en partie responsable de ces DSB. Ces DSB sont signalées à la cellule via la protéine Rad9, protéine adaptatrice du checkpoint de dommages à l'ADN. De façon concordante, nous avons observé une activation de la protéine effectrice de ce checkpoint Rad53 à l'entrée en mitose. La viabilité des cellules cdc6-1 repose sur les protéines de checkpoint Chk1 et Rad53 ainsi que sur la présence de cohésines et des topoisomérases Top2 et Top3. Selon nous, la réplication prolongée par diminution du nombre d'origines n'est pas détectée par les cellules comme un stress réplicatif. Lors de l'entrée en mitose, la condensation des chromosomes transformerait les fourches de réplication en structures reconnues et clivées par les nucléases Mus81-Mms4 et Yen1, qui sont activées en mitose, dirigeant ces régions sous-répliquées vers la réparation par recombinaison. Ce sont les coupures induites en mitose, non la progression des fourches, qui activent le checkpoint. Nous proposons que la sous-réplication de segments d'ADN consécutive à un défaut de licensing des origines favorise la recombinaison non homologue et génère l'instabilité chromosomique, à l'image des sites fragiles communs qui sont le siège de remaniements récurrents lors de la cancérogenèse. / Chromosome instability (CIN), a hallmark of cancer cells, can take its roots in the G1 phase of the cell cycle, when replication origins are licensed. This has been illustrated in the yeast Saccharomyces cerevisiae and is consistent with the fact that a vast number of tumors presents mutations in G1/S transition regulators. However the mechanisms by which this instability occurs are still not well established. Using the yeast cdc6-1 mutant in which preRC formation can be decreased gradually with temperature, we show that cells replicating from fewer origins undergo massive DNA double-strand break (DSB) formation in mitosis. Blocking mitotic entry by Swe1 overexpression or Clb1-4 depletion, and inactivation of Cdc5 (Polo) both suppress DSB formation in cdc6-1 cells, demonstrating that DSBs do not stem from collapsed forks but are actively induced during mitosis. DSB formation is dependent on chromosome condensation and the Mus81-Yen1 structure-specific endonucleases. These DSBs then trigger the Rad9 DNA damage checkpoint. Accordingly, Rad53 phosphorylation is detected only after entry into mitosis. We propose that cells replicating their DNA from fewer origins enter mitosis undetected, then condense their chromosomes and cleave unreplicated regions by Mus81-Yen1 for repair by recombination. The viability of cdc6-1 cells at semi-permissive temperature relies on Chk1 and Rad53, as well as on cohesins and topoisomerases Top2 and Top3. Cleavage of under replicated DNA segments in mitosis may favor non-homologous repair pathways leading to chromosome rearrangements, as seen for common fragile sites that co-localize with recurrent breakpoints in cancer.

Strontium isotope (87Sr/86Sr) analyses have been used effectively to reconstruct the origin of osteological remains that have not been exposed to increasing temperatures (Bentley, 2006; Juarez, 2008; Knudson et al., 2005). However, previous research has shown that no thermally induced changes occur to original strontium isotope values (87Sr/86Sr) of bone and teeth specimens that have been subjected to temperatures between 212 and 1832 degrees Fahrenheit (Beard and Johnson, 2000; Grupe and Hummel, 1991; Harbeck et al., 2011), though the published literature regarding strontium isotope ratio stability and survivorship in thermally altered bone and teeth is limited. This is surprising given the potential implications for geolocation inquiries of cremains (or severely burnt remains) in both forensic and archaeological contexts. This research will focus on the latter context by using strontium isotope analyses, via thermal ionization mass spectrometry, to reconstruct the origins of human remains from a unique late Woodland period (A.D. 600-850) archaeological burial site known as the Perrins Ledge crematory, located in the lower Illinois River valley. Strontium isotope signatures derived from the Perrins Ledge cremains will be compared with values obtained from osteological faunal remains from three contemporary neighboring sites (Carlin, Apple Creek, and Newbridge). It is expected that the Perrins Ledge values will mirror those derived from the neighboring contemporary habitation sites suggesting local groups used the crematorium.