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Adhesion signaling is a field of cell biology studied mostly on adherent cell types. However, hematopoietic cells grow in suspension, and use adhesion to the extracellular matrix (ECM) only in their early development, or - in case of differentiated cells - to perform the tasks they are specialized for. Peripheral leukemic cells are derived from more or less immature hematopoietic precursors that have, among other alterations, defects in adhesion to the bone marrow microenvironment. On the other hand, leukemic stem cells (LSC) use adhesion to the bone marrow ECM as a mean to evade chemotherapy, and are a source of the minimal residual disease, and of the disease relapses. Kinases of the Src family (SFK) are known regulators of adhesion signaling in adherent cell types, and their overexpression and/or hyperactivation is often seen in malignant diseases. They are also involved in hematooncologic disease progression and resistance to therapy, particularly in several types of leukemias. In the present work, we used a variety of methods including microimpedance measurement, fluorimetric measurement of adhered cell fraction, immunoblotting, confocal microscopy, and interference reflection microscopy. Our results indicate that active Lyn kinase, a hematopoietic SFK, is present in adhesion structures of...

Background: The regenerative function of stem cells from the apical papilla (SCAPs) is affected by the presence of bacteria from infected root canals. Living microorganisms influence SCAP function but the effect of inactive bacteria and its components on SCAPs needs further investigation. Aim: To investigate the effect of residual bacterial products on the proliferation of SCAP under anaerobic conditions. Methods: Five opportunistic bacterial strains from infected dental root canals namely Fusobacterium nucleatum, Enterococcus faecalis, Actinomyces gerensceria, Slackia exigua, and Peptostreptococcaceae yuri, and two probiotic strains Lactobacillus gasseri, Lactobacillus reuteri were used in this study. SCAPs collected from three healthy young patients were exposed to UV-inactivated bacteria or bacterial DNA. Real-Time Cell Analyzer (RTCA) was used to determine real-time proliferation of SCAPs after 80 hours exposure of inactivated bacteria or their DNA. Results: UV killed Fusobacterium nucleatum and Enterococcus Faecalis DNA affects proliferation of stem cells from dental apical papilla as monitored in real-time. Inactivated probiotic species do not affect SCAPs in terms of proliferation. Conclusion:  Inactivated bacteria can affect SCAP function by modulating their proliferation. Further investigations studying SCAP modulation and differentiation are warranted to understand and improve regenerative endodontic procedures.

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Toutes les formes de vie assemblent et désassemblent continuellement des composés chimiques via un processus de consommation d'énergie appelé métabolisme. Le métabolisme est généralement modélisé en chimie et biologie par un cycle. Ce modèle dynamique traduit la transformation de composés de base en une cascade de produits appelés métabolites. Celui-ci est comparable à un ouragan à l’échelle moléculaire. De manière analogique et imagée un cyclone est constitué de deux éléments, l'air et l'eau, et transforme l’environnement qui l’entoure par un processus endothermique (consommateur d’énergie). Traditionnellement, la recherche chimique sur les origines de la vie est concentrée principalement sur la synthèse de composés chimiques sans suffisamment apprécier leur place dans la plus grande organisation biochimique de la vie. La vie construit toutes ses molécules à partir du dioxyde de carbone, pourtant elle manque étonnamment d'innovation à cet égard. Malgré presque 4 milliards d'années d'évolution, les organismes autotrophes utilisent seulement six voies différentes pour construire leurs molécules à partir du CO2. Parmi elles, deux voies – la voie de l’acétyle CoA (aussi appelée voie Wood-Ljungdahl) et le cycle du rTCA (également appelé le cycle de Krebs inverse) - sont considérées comme primitives, et contiennent les cinq molécules servant de précurseurs chimiques universels pour toute la biochimie. Comment et pourquoi les voies de l’acétyle CoA et du rTCA sont-elles apparues? Pour répondre à cette question, une recherche systématique a été effectuée afin de trouver des catalyseurs chimiques non-enzymatiques ou des minéraux simples, ainsi que des réactifs pouvant promouvoir les réactions d'anabolisme principal, particulièrement la voie de l’Acétyle CoA et le cycle de rTCA. A l’origine, pour créer les molécules organiques complexes comme les enzymes il a fallu que des molécules plus simples avec un moins grand nombre de carbone se forme sur terre et cela à partir du CO2. On peut donc supposer que les premiers produits à plusieurs carbones sont issus de synthèse totalement inorganique comme celles développer dans notre laboratoire, plutôt que d’une évolution chimique et organométallique simultanée, c’est-à-dire une interaction efficace entre une molécule carbonée et un ou plusieurs métaux à l’instar de certains enzymes. Après avoir trouvé autant de façons possible de promouvoir individuellement chaque étapes des cycles catalytiques étudiés, seules les conditions réactionnelles mutuellement compatibles (à savoir des conditions permettant de produire l’ensemble des métabolites dans le bon ordre) ont été retenu. / All life forms continuously build up and break down its constituent chemical building blocks, through an energy consuming process called metabolism. Just like a hurricane’s dynamic patterns and its building blocks (air and water) as being equally fundamental to its nature, so too should metabolism’s dynamic chemical patterns and chemical building blocks be viewed as equally characteristic. Traditionally, much chemical research on the origins of life is overly focused on the synthesis of chemical building blocks without sufficiently appreciating their place in life’s larger biochemical self-organization. Life ultimately builds all of its molecules from carbon dioxide, yet it is surprisingly lacking in innovation in this respect. Despite nearly 4 billion years of evolution, autotrophic organisms use only six pathways to build their molecules from CO2. Two of these pathways – the acetyl CoA pathway (also known as the Wood-Ljungdahl pathway) and rTCA cycle (also known as the reverse Krebs cycle) - are thought to be ancestral, with just five molecules within them serving as the universal chemical precursors for all of biochemistry. How and why did these pathways get their start? To answer this question, a systematic search was designed to find simple, non-enzymatic chemical or mineral catalysts and reagents, that can promote the reactions of core anabolism, particularly the acetyl CoA pathway and the rTCA cycle. After finding as many ways as possible to promote each reaction, they could be narrowed down to mutually compatible conditions where many reactions can occur in sequence. The more of core anabolism that can be achieved under a single set of purely chemical conditions, the more likely it is to have constituted early prebiotic chemistry rather than a later product of chemical and biological evolution.

<p>In recent years the aviation industry is moving towards the use of programmable logic devices in airborne safety critical systems. To be able to certify the close to fail-safe functionality of these programmable devises (e.g. FPGAs) to the aviation authorities, the aviation industry uses a guideline for design assurance for airborne electronic hardware named RTCA DO-254. At the same time the PLD industry is developing ever more complex embedded system-on-chip solutions integrating more and more functionality on a single chip.</p><p>This thesis looks at the problems that rise when trying to certify system-on-chip solutions according to RTCA DO-254. Used as an example of an embedded FPGA, the Actel Fusion FPGA chip with integrated analog and digital functionality will be tested according to the verification guidance. The results show that for the time being, the examined embedded system-on-chip FPGAs can not be verified to be used in airborne safety critical systems.</p>

In recent years the aviation industry is moving towards the use of programmable logic devices in airborne safety critical systems. To be able to certify the close to fail-safe functionality of these programmable devises (e.g. FPGAs) to the aviation authorities, the aviation industry uses a guideline for design assurance for airborne electronic hardware named RTCA DO-254. At the same time the PLD industry is developing ever more complex embedded system-on-chip solutions integrating more and more functionality on a single chip. This thesis looks at the problems that rise when trying to certify system-on-chip solutions according to RTCA DO-254. Used as an example of an embedded FPGA, the Actel Fusion FPGA chip with integrated analog and digital functionality will be tested according to the verification guidance. The results show that for the time being, the examined embedded system-on-chip FPGAs can not be verified to be used in airborne safety critical systems.

Photocatalytic reactions mediated by semiconductors such as ZnS, TiO2, ZnO, etc. can harvest solar energy into chemical bonds, a process with important prebiotic and environmental chemistry applications. The recycling of CO2 into organic molecules (e.g., formate, methane, and methanol) facilitated by irradiated semiconductors such as colloidal ZnS nanoparticles has been demonstrated. ZnS can also drive prebiotic reactions from the reductive tricarboxylic acid (rTCA) cycle such as the reduction of fumarate to succinate. However, the mechanism of photoreduction by ZnS of the previous reaction has not been understood. Thus, this thesis reports the mechanisms for heterogeneous photocatalytic reductions on ZnS for two model reactions in water with sulfide hole scavenger. First the reduction of CO2 is carried out under variable wavelength of irradiation and proposed to proceed thorough five steps resulting in the exclusive formation of formate. Second the reduction of the double bond of fumaric acid to succinic acid is reported in detail and compared to the previous conversion of CO2 to formic acid. Both reactions are carried out under variable wavelength of irradiation and proposed to proceed thorough one electron transfer at a time. In addition, a new method to measure the bandgap of colloidal ZnS suspended in water is established. Furthermore, the time scales of electron transfer and oxidizing hole loss during irradiation of ZnS for both reactions are reported and interpreted in terms of the Butler-Volmer equation. The sunlight promoted production of succinate introduced above, provides a connection of this prebiotic chemistry work to explore if central metabolites of the rTCA cycle can catalyze the synthesis of clay minerals. Clay minerals are strong adsorbents that can retain water and polar organic molecules, which facilitate the polymerization of biomolecules and conversion of fatty acid micelles into vesicles under prebiotic conditions relevant to the early Earth. While typical clay formation requires high temperatures and pressures, this process is hypothesized herein to be accelerated by central metabolites. A series of synthesis are designed to last only 20 hours to study the crystallization of sauconite, an Al- and Zn-rich model clay, at low temperature and ambient pressure in the presence of succinate as a catalyst. Succinate promotes the formation of the trioctahedral 2:1 layer silicate at ≥ 75 °C, 6.5 ≤ pH ≤ 14, [succinate] ≥ 0.01 M. Cryogenic and conventional transmission electron microscopies, X-ray diffraction, diffuse reflectance Fourier transformed infrared spectroscopy, and measurements of total surface area and cation exchange capacity are used to study the time evolution during the synthesis of sauconite. While the studies with ZnS presented above advanced the fundamental understanding of photocatalysis with single semiconductors, the environmental applications of this material appear limited. A common limitation to photocatalysis with single semiconductors is the rapid recombination of photogenerated electron-hole pairs, which reduces significantly the efficiency of the process that in the case of ZnS also suffers from photocorrosion in the presence of air. In order to overcome the fast charge recombination and the limited visible-light absorption of semiconductor photocatalysts, an effective strategy is developed in this work by combining two semiconductors into a nanocomposite. This nanocomposite is solvothermally synthesized creating octahedral cuprous oxide covered with titanium dioxide nanoparticles (Cu2O/TiO2). The nanocomposite exhibits unique surface modifications that provide a heterojunction with a direct Z-scheme for optimal CO2 reduction. The band structure of the nanocomposite is characterized by diffused reflectance UV-visible spectroscopy, X-ray photoelectron spectroscopy (XPS) and ultraviolet photoelectron spectroscopy. The photoreduction of CO2(g) to CO(g) on the nanocomposite is investigated in the presence water vapor as the hole scavenger that generates the quantifiable hydroxyl radical (). The quantum efficiency of CO production under irradiation at λ ≥ 305 nm with the nanocomposite is 2-times larger than for pure Cu2O. The detection of and XPS analysis contrasting the stability of Cu2O/TiO2 vs Cu2O during irradiation prove that TiO2 prevents the photocorrosion of Cu2O. Overall, the studies of photocatalytic reductions on single component semiconductors reveal new knowledge needed for developing future photocatalytic application for fuel production, wastewater treatment, reducing air pollution, and driving important prebiotic chemistry reactions. Furthermore, the design of a photocatalyst operating under a Z-scheme mechanism provides a new proof of concept for the design of systems that mimic photosynthesis. Finally, this work also demonstrates how molecules obtained by mineral mediated photochemistry can catalyze clay formation; highlighting the important role that photochemistry may have played for the origin of life on the early Earth and other rocky planets.

In the thesis the design of the Data Storage System (DSS) is proposed with the respect to the V-Model methodology. The design is based on users requirements, from which the system requirements are created and the technical specification of the DSS is developed. In the technical specifications the functionality of the DMM and HMI DSS subsystems are described and sub-system requirements are assigned to them, then they are subdivided and assigned to individual DMM (Data memory module) and HMI hardware items. Moreover, requirements are analyzed on hardware items, specific electronic components, are selected and implemented into the block design of the DMM hardware. Based on the block design of hardware, the hardware of the DMM subsystem is designed, selectively simulated and implemented along with the printed circuit board. On the implemented hardware of the DMM subsystems measurements are performed in order to verify the basic functionality of the hardware and the calculated, assimilated and measured values are compared as well. At the end of the thesis there is a short description of the implementation of the software design and its use for basic initialization of the selected processor, together with the verification of its basic function - measuring the frequency of the internal clock sources and the clock domains. The work is completed by sending a message of defined parameters to the selected communication line and sapling it by an oscilloscope, so that the basic function of the DMM subsystem is verified.