The CLAVATA1 (CLV1), CLV2 and CORYNE (CRN) receptors egulate cell proliferation in shoot meristems through inhibition of WUSCHEL (WUS). Mutations in these receptors produce more floral organs. The prevailing model proposes that the extra organs are generated from enlarged floral meristems. Using forward and reverse genetics, I identified new alleles in clv1, clv2 and crn and found that most alleles only affect fruit organ number and not sepal, petal or stamen number. Analysis of inflorescence and floral meristems of clv1, clv2 and crn mutants revealed that most mutants do not have altered meristem size. I show that mutations in the ERECTA gene enhance the extra valve phenotype in crn mutants by increasing proliferation in floral meristems. Further data indicate that all mutants tested generate extra organs during fruit development and that CLV1, CLV2 and CRN expression in developing fruit overlaps with regions of increased cell division and extra organs formation. In addition, I provide evidence that CLV1 regulates the transcription factor SHOOTMERISTEMSLESS (STM) in these same regions, as mutations in STM suppress the fruit development phenotype in clv1 mutants.Analysis of the relationship between CLV pathway receptors in meristems and fruit revealed that during fruit development, all three are required to regulate fruit organ number. In meristems, I find that CLV1 appears to play a predominant role, based on evidence that the CLV1 homolog BARELY ANY MERISTEM1 (BAM1) compensates for the absence of CLV1 in the meristem but not in fruit. The fact that BAM1 does not interact genetically with CLV2 or CRN in meristems, further supports the hypothesis that BAM1/CLV1 receptor complexes play key roles in meristems. My analyses suggest that CLV3 acts specifically in the meristem pathway, and not in fruit. Also, I provide genetic data for a CLV3-related CLE gene as a ligand for the fruit-specific pathway. The work presented here provides evidence that a CLV/CRN-STM pathway acts in fruit to restrict cell division and consequently organ number via a mechanism analogous to the CLV/CRN-WUS pathway in shoot meristems, supporting the hypothesis that plants use conserved CLE/Receptor-like kinase/Homeodomain signaling module to maintain meristematic regions throughout the plant.

Receptor-like kinases (RLKs) are encoded for by one of the largest gene families in Arabidopsis and represent the predominant form of cell surface receptors in plants. RLKs mediate signal transduction in diverse processes including steroid-mediated growth pathways, pathogen-triggered innate immune responses. Here I present characterization of mutant phenotypes, expression patterns, and genetic interactions for the BAK1 INTERACTING RECEPTOR (BIR) family of Leucine-rich Repeat-RLKs, three members of which have had no previous characterization. Furthermore, I show that cell death, aerial growth, and lateral root development defects in bir1-1 are suppressed by mutations of the LRR-RLK co-receptor BRI1-ASSOCIATED KINASE 1 (BAK1); I identify a novel primary root growth phenotype in bir1-1 mutants, as well as a lateral root development phenotype for bir3 mutants; and primary root growth and aerial defects in bir3.bir4;bak1 triple mutants. Using an allelic series of bak1 mutations I show that bir phenotypes are dependent upon particular functions of BAK1, and propose that the BIR family exhibits a novel function, previously undescribed for LRR-RLKs, as regulators of co-receptor/ligand-binding receptor complex specificity.

Ca2+ functions as a second messenger in all eukaryotes. Such Ca2+ signaling is used to coordinate plant responses to numerous stimuli, both developmental and environmental. Ca2+ signals are often transduced via the action of the ubiquitous Ca2+ sensor calmodulin (CaM). CaM-dependent protein phosphorylation forms an important component of such signal transduction pathways, including that regulating the initiation and development of symbiotic rhizobial nodules in legumes such as soybean (Glycine max). To further understand the role of Ca2+/CaM during nodule organogenesis, a nodule cDNA expression library was screened using radiolabeled CaM as a probe to identify novel CaM-binding proteins (CaMBPs). This screen resulted in the identification of a previously uncharacterized receptor-like kinase, termed GmCaMK1. The CaM-binding domain (CaMBD) of GmCaMK1 is located in a 24 residue region of GmCaMK1, which overlaps with the subdomain XI of a conserved Ser/Thr kinase domain. This CaMBD bound CaM in a Ca2+-dependent manner, and with high affinity (Kd = 1.4 nM). Furthermore, two hydrophobic residues (V372 and L375) were identified as critical for GmCaMK1-CaM interaction. Recombinant GmCaMK1 exhibited protein kinase activity in vitro, with autophosphorylation activity unaffected by the presence or absence of Ca2+/CaM. GmCaMK1 expression is enriched in developing nodules and main roots, and highest expression level was observed in lateral roots. While the function of CaM-binding to GmCaMK1 remains unclear, the affinity and Ca2+-dependence of the GmCaMK1-CaM interaction strongly suggests that GmCaMK1 is a physiologically relevant CaM target. The Arabidopsis ortholog of GmCaMK1, AtCaMK1 also bound CaM when expressed as a recombinant protein. GmCaMK1 is part of a multi-member family in soybean, as are putative homologs across taxa, suggesting that this is a novel, conserved family of CaMBPs. / Thesis (Master, Biology) -- Queen's University, 2010-01-28 16:00:48.69

La légumineuse Medicago établie une interaction symbiotique avec des bactéries du sol fixatrices d’azote, les rhizobia. Cette interaction provoque la formation d’un nouvel organe racinaire, la nodosité, au sein de laquelle les bactéries infectent de manière massive et chronique les cellules de la plante. Malgré cette invasion, aucune réaction de défense n’est observée ce qui suggère l’existence de mécanismes symbiotiques locaux de contrôle de l’immunité. Les gènes de Medicago DNF2 et SymCRK codant une phospholipase C-like et un récepteur-like kinase riche en cystéines, semblaient intervenir dans ces mécanismes peu connus. Mon travail de thèse a consisté à mieux caractériser les mécanismes de tolérance aux rhizobia notamment ceux faisant intervenir ces deux gènes. Nos résultats indiquent que dnf2 et symCRK forment des nodosités non-fixatrices, nécrotiques, présentant une activation des défenses et une perte de viabilité des bactéroïdes (forme intracellulaire des bactéries). Par ailleurs, l’utilisation de mutants bactériens nous a permis de montrer que, chez la plante sauvage, la perte de viabilité des bactéroïdes et l’absence de fixation d’azote ne sont pas suffisantes pour stimuler les défenses. Nos résultats indiquent également que dnf2 et symCRK agissent successivement lors du processus symbiotique et que la nécessité de dnf2 pour l’établissement de la symbiose peut être contournée dans certaines conditions de culture. Enfin, nous avons réalisé une analyse du protéome de symCRK et des expériences de physiologie végétale qui ont mis en évidence la nécessité, pour le maintien d’une symbiose efficace, de réprimer la voie éthylène après internalisation des rhizobia dans les cellules végétales. Ensemble, nos données améliorent la compréhension du phénomène de tolérance observée dans les nodosités de Légumineuses. / The legume plant Medicago establishes symbiotic interaction with nitrogen fixing bacteria, called rhizobia. This interaction leads to the formation of root organs, the nodules. A massive and chronic infection of nodule cells is observed without induction of any plant defense suggesting that a symbiotic mechanism controls immunity in the nodules. The two Medicago genes, DNF2 and SymCRK encoding a phospholipase C-like protein and a cysteine-rich receptor-like kinase respectively were identified as potentially involved in the prevention of defenses during the late steps of the symbiosis. However, this phenomenon was poorly characterized. Herein we improved the characterization of the Legume tolerance to intracellular rhizobia with an emphasis on the role of DNF2 and SymCRK. Our results indicate that dnf2 and symCRK produce necrotic nodules that do not fix nitrogen, that develop defenses and in which bacteroids, the intracellular form of rhizobia, rapidly loose viability. Using bacterial mutants, we show that reduced bacteroid viability and/or nitrogen fixation defect are not per se enough to trigger defenses in wild type plants. Our results also indicate that DNF2 and SymCRK act successively during the symbiotic process and that artificial culture conditions can bypass DNF2 requirement for symbiosis. Finally, symCRK proteome analysis and physiological studies together indicate that the ethylene pathway has to be repressed after rhizobia internalization within the plant cells to maintain efficient symbiosis. Together our data improve the knowledge on the basis of legume tolerance to rhizobia.

<p>An increasing number of chloroplast proteins have been found to interact with plant virus proteins. This is not surprising because these viruses cause various mosaic, mottles, and chlorosis symptoms on host leaves indicating damage to chloroplasts. A chloroplast protein, AtPsbP, was identified in a yeast two-hybrid screen as interacting with <i>Alfalfa mosaic virus</i> (AMV) coat protein (CP). AMV is a ssRNA virus with a wide host range including Arabidopsis. AtPsbP is an extrinsic subunit of photosystem II and with PsbQ is vital for water oxidation. We found that an RNAi knock-down of PsbP in <i>Nicotiana tabacum</i>, allowed increased replication of AMV and the development of quite severe disease symptoms in comparison to a wild-type <i>N. tabacum</i>. This suggested that PsbP plays an important role in plant resistance to AMV. PsbP, in addition to its role in photosynthesis, has been reported to interact with a wall-associated receptor kinase, WAK1, whereby it may affect plant defense signaling. We found that AtPsbP is a link between AtWAK1 and AMV CP at the plasma membrane. The formation of the AtWAK1-AtPsbP-AMV CP complex activated WAK1 kinase activity causing phosphorylation of PsbP and significant inhibition of AMV replication. We also found that the formation of the ternary complex induced the activation of the MAPK signal pathway. Analysis of the susceptibility of an Arabidopsis WAK1 knock-down indicated that WAK1, like PsbP, is critical for inhibiting AMV replication. Overall, we found a unique virus perception strategy, whereby a chloroplast protein (PsbP) interacts with a virus protein and then a Receptor-like kinase protein (WAK1) to transduce signals through the MAPK signaling pathway to activate defense responses.</p>

No description available.

L'endosymbiose racinaire entre les plantes et les champignons mycorhiziens à arbuscules (CMA) permet aux plantes d'avoir un meilleur accès aux nutriments du sol. Pour cette raison, cette endosymbiose joue un rôle majeur dans les écosystèmes et pour l'agriculture durable. Les étapes clés de la colonisation des racines par les CMA sont: 1) la pénétration des CMA dans le système racinaire à travers les cellules de l'épiderme et du cortex externe, et 2) la formation dans les cellules du cortex interne d'une structure ramifiée appelée arbuscule, qui permet des échanges entre les cellules végétales et les hyphes fongiques. L'établissement de cette symbiose implique une communication entre les deux partenaires. Les plantes produisent des hormones, les strigolactones qui induisent chez les CMA la production de signaux symbiotiques : des lipo-chitooligosaccharides (Myc-LCO) et des chitooligosaccharides courts (Myc-COs). Les Myc-LCO et les Myc-CO induisent des réponses moléculaires et physiologiques chez les plantes qui sont capables de former des mycorhizes à arbuscules. Cependant, leur rôle exact dans l'établissement des mycorhizes à arbuscules n'est pas connu. La difficulté à cultiver et transformer le partenaire fongique de cette symbiose rend la recherche compliquée du côté fongique. Du côté des plantes, on sait que des membres de la famille des récepteurs kinases à domaines lysin (LysM-RLK) perçoivent des LCO et des CO produits par divers microorganismes et sont donc de bons candidats pour percevoir des Myc-LCO et des Myc-CO. La plupart des recherches sur les mycorhizes à arbuscules sont réalisées chez des légumineuses, espèces chez lesquelles plusieurs duplications de gènes codant les LysM-RLK ont eu lieu. J'ai donc utilisé lors de mon doctorat des Solanaceae (Solanum lycopersicum, Petunia hybrida et Nicotiana benthamiana) pour étudier le rôle de deux récepteurs putatifs de Myc- LCO, codés par les gènes LYK10 et LYK4. Ces deux gènes, physiquement proches l'un de l'autre dans les génomes de la plupart des dicotylédones, proviennent probablement d'une ancienne duplication en tandem. En utilisant une approche biochimique, nous avons montré que SlLYK10 de S. lycopersicum est capable de lier des LCO avec une haute affinité. De plus, j'ai montré que le promoteur de SlLYK10 est exprimé dans l'épiderme et le cortex externe avant la colonisation par les CMA, puis dans des cellules contenant des arbuscules au cours de la colonisation par les CMA. Enfin, des approches de génétique inverse chez la tomate et le pétunia ont permis de démontrer que LYK10 contrôle la pénétration des CMA dans les racines et la formation des arbuscules. Ces résultats suggèrent que LYK10 perçoit les LCO et active chez les plantes la machinerie nécessaire à la pénétration de CMA dans les cellules végétales et à la formation des arbuscules. / The root endosymbiosis between plants and arbuscular mycorrhizal fungi (AMF) allows the plants to have a better access to soil nutrients. For this reason this endosymbiosis plays a major role in ecosystems and in sustainable agriculture. The key steps for AMF colonization are: 1) the AMF penetration in the root system through crossing epidermal/outer cortical cells, and 2) the formation of a branched inner cortex structure called arbuscules that permits exchanges between plant cells and fungal hyphae. The establishment of this symbiosis involves communication between the two partners of the symbiosis. Plants produce strigolactones, hormones that induce in AMF the production of symbiotic signals : lipo-chitooligosaccharides (Myc-LCOs) and short chitooligosaccharides (Myc-COs). Both Myc-LCOs and Myc-COs induce plant molecular and physiological responses known to be associated with the formation of arbuscular mycorrhiza (AM). However, theit exact role in AM establishment is unknown. The difficulty to grow and transform the fungal partner of this symbiosis makes the research complicated on the fungal side. On the plant side, members of the lysin motif receptor-like kinase (LysM-RLK) family are known to perceive LCOs and COs produced by various microorganisms and are thus good candidates to perceive Myc-LCOs and Myc-COs. Most of the laboratory researches on AM conducted worldwide are performed on legumes where the LysM-RLK family has encountered several gene duplications. During my PhD I used Solanaceae species (Solanum lycopersicum, Petunia hybrida and Nicotiana benthamiana) to study the role of two candidate Myc-LCO receptors encoded by the genes LYK10 and LYK4. These two genes are physically close to each other in genomes of most of the dicotyledons and likely originate from of an ancient tandem duplication. By using a biochemical approach, we showed that S. lycopersicum SlLYK10 is able to bind LCOs with high affinity. Moreover, I showed that SlLYK10 promoter is expressed in epidermis/outer cortex before AMF colonization and also in arbuscule-containing cells during colonization. Finally, reverse genetic approaches in tomato and petunia allowed demonstrating that LYK10 controls AMF penetration into the roots and arbuscule formation. Taken together, these results suggest that LYK10 perceive LCOs and induce/activate the plant machinery required for AMF penetration into plant cells. Altogether this strongly suggests that LCOs play a role in AMF perception by plant during AM establishment. By using the same approaches, we found that N. benthamiana NbLYK4, as its orthologs in legumes and other dicotyledons, also binds LCOs with high affinity and is involved in AM establishment and plant defence. NbLYK4-silenced plants showed reduced responses to defence elicitors and increased colonization by pathogens and AMF. This led to the hypothesis that LYK4 perceives LCOs and locally inhibits plant defence during AMF colonization. This strongly suggests that Myc-LCOs are able to regulate plant defence. In conclusion, at least two proteins are involved non-redundantly in LCO perception in Solanaceae, LYK10 and LYK4 and regulates complementary plant machineries required for AMF colonization.

Plant diseases remain a major obstruction to meeting the world’s increased demand for soybean oil and protein. Reducing the losses caused by diseases in order to improve crop production is a high priority for agricultural research. The need for novel strategies for plant disease control cannot be overstated. In the present study, selected defense-related genes were silenced and/or overexpressed in soybean using a virus-based vector and the resultant plants were tested for their responses to pathogens. The first part of the study focused on Rps1k (Resistance to Phytophthora sojae) gene. The two conserved domains encoding ‘P-Loop NTPase’ and ‘PLN03210’ of Rps1k were independently overexpressed. Stem inoculation assays for the overexpressing plants showed significant resistance to virulent races; 90% standing plants compared to 10% in controls. Lesion length was greatly restricted only in case of plants overexpressing ‘PLN03210’. Simultaneous silencing of Rps1k-1 and Rps1k-2 resulted in remarkable susceptibility to avirulent races when tested by a detached-leaf assay. The second part of the study entailed silencing/overexpression of the chlorophyllase genes GmCLH1 and GmCLH2 and testing the responses of the silenced/overexpressing plants to the sudden death pathogen Fusarium virguliforme. Four weeks post root inoculation, GmCLH2-silenced plants showed enhanced resistance while the GmCLH2-overexpressing plants exhibited markedly increased susceptibility when compared to empty vector control. RT-PCR assay of PR genes revealed elevated expression of PR2 and PR4 in GmCLH2-silenced plants. In the third part of the study, soybean plants silenced for a leucine-rich repeat receptor-like kinase (GmRLK3) gene were examined for their responses to different pathogens. Silencing of GmRLK3 enhanced susceptibility to infection with Alternaria tenuissima or Sclerotinia sclerotiorum as revealed by rapid disease progress on treated leaves. Surprisingly, silencing of GmRLK3 in known susceptible soybean cultivars rendered the silenced plants resistant to P. sojae. The ensuing partial resistance to P. sojae was consistent with results of RT-PCR assays that showed a significant increase in the transcript level of the osmotin-encoding gene (PR5a) in the GmRLK3-silenced plants. PR5a is considered a marker for systemic acquired resistance.

<p>The developing nervous system depends largely on extracellular cues to shape its complex network of neurons. Classically, neurotrophins are known to be important mediators in this process. More recently, Bone Morphogenetic Proteins (BMPs), belonging to the Transforming Growth Factor beta (TGFβ) superfamily of secreted cytokines, have been shown to exert a wide range of effects, such as cellular growth, differentiation, survival and apoptosis, both in the developing and adult nervous system. They signal via serine/threonine kinase receptor essentially to the Smad pathway, which carries the signal to the nucleus where the transcription of target genes is regulated.</p><p>This thesis investigates the functions of BMPs in the nervous system, using a set of different models. Firstly, a targeted deletion of GDF10 (BMP3b) in the mouse was established to evaluate the role of this growth/differentiation factor in the hippocampal formation, a brain area known to be involved in memory processing. Other members of the TGFβ superfamily likely compensate for the lack of GDF10, since no detectable alterations in hippocampal function or gene transcription profile have been found. Secondly, a mouse model was set up, with the aim to study impaired BMP-signalling in dopaminergic neurons. The tyrosine hydroxylase (TH) locus was used to drive the expression of dominant negative BMP receptors by means of bicistronic mRNAs. TH is the rate-limiting enzyme in the biosynthesis of catecholamine and the mice described, show a graded decrease of TH-activity resulting in severe to mild dopamine deficiency. The contribution of the dominant negative BMP receptors to the phenotype is however secondary to the apparent TH hypomorphism. The final theme of this thesis is the potentiating effects of BMPs on neurotrophin-induced neurite outgrowth as studied in explanted ganglia from chick embryos and in the rat phaeochromocytoma cell line PC12. A number of pharmacological inhibitors of intracellular signalling kinases were applied to the cultures in order to reveal the contribution of different pathways to the enhanced neurite outgrowth. We made the unexpected finding that inhibition of MEK signalling mimicked the potentiating effects of BMP stimulation in the chick system. The underlying mechanisms for the synergistic effects, however, are still an enigma.</p>

The developing nervous system depends largely on extracellular cues to shape its complex network of neurons. Classically, neurotrophins are known to be important mediators in this process. More recently, Bone Morphogenetic Proteins (BMPs), belonging to the Transforming Growth Factor beta (TGFβ) superfamily of secreted cytokines, have been shown to exert a wide range of effects, such as cellular growth, differentiation, survival and apoptosis, both in the developing and adult nervous system. They signal via serine/threonine kinase receptor essentially to the Smad pathway, which carries the signal to the nucleus where the transcription of target genes is regulated. This thesis investigates the functions of BMPs in the nervous system, using a set of different models. Firstly, a targeted deletion of GDF10 (BMP3b) in the mouse was established to evaluate the role of this growth/differentiation factor in the hippocampal formation, a brain area known to be involved in memory processing. Other members of the TGFβ superfamily likely compensate for the lack of GDF10, since no detectable alterations in hippocampal function or gene transcription profile have been found. Secondly, a mouse model was set up, with the aim to study impaired BMP-signalling in dopaminergic neurons. The tyrosine hydroxylase (TH) locus was used to drive the expression of dominant negative BMP receptors by means of bicistronic mRNAs. TH is the rate-limiting enzyme in the biosynthesis of catecholamine and the mice described, show a graded decrease of TH-activity resulting in severe to mild dopamine deficiency. The contribution of the dominant negative BMP receptors to the phenotype is however secondary to the apparent TH hypomorphism. The final theme of this thesis is the potentiating effects of BMPs on neurotrophin-induced neurite outgrowth as studied in explanted ganglia from chick embryos and in the rat phaeochromocytoma cell line PC12. A number of pharmacological inhibitors of intracellular signalling kinases were applied to the cultures in order to reveal the contribution of different pathways to the enhanced neurite outgrowth. We made the unexpected finding that inhibition of MEK signalling mimicked the potentiating effects of BMP stimulation in the chick system. The underlying mechanisms for the synergistic effects, however, are still an enigma.