Thèse numérisée par la Direction des bibliothèques de l'Université de Montréal.

Among efforts to develop sustainable approaches towards the intensive rearing of finfish within open marine waters, is the development of integrated aquaculture techniques. Integrated Multi-Trophic Aquaculture (IMTA), has been promoted as a way to reduce unwanted environmental impacts associated with the intensive production of marine finfish within net-pens. The principle aim of this concept, is the bioremediation of nutrient discharges from fish aquaculture. This is to be achieved by integrating fish cultivation with the growing of species from lower trophic levels, which use the nutrient discharges as a food source. Many studies have been performed that investigate the ability of various species of macroalgae to remove dissolved nutrient discharges, and the ability bivalves to remove solid-bound nutrients, presented as either fish faeces, or an enhanced production of phytoplankton that may be promoted by nutrients emitted by fish-farms. IMTA has also been suggested as a means to improve overall productivity per unit of feed applied to fish, through the conversion of nutrient emissions into additional biomass, such as the tissues of macroalgae or bivalves. Within the research community which focuses upon the environmental impacts of aquaculture, there is a growing awareness that sustainable solutions to aquaculture production cannot be realised through a focus restricted to the growing-phase, and to a limited set of environmental impacts which may this activity may produce. This is because changes to a specific production phase often promote changes at phases located elsewhere along a products value chain. Life-Cycle Assessment (LCA), is a method employed for modelling the environmental impacts that may potentially be generated across the value chain of a product. It is particularly useful for identifying instances of environmental impact shifting; a term used to describe situations where efforts to reduce the contribution of a specific production phase towards one or more environmental impacts, has the effect of either displacing this contribution to another phase, or increases the contribution of production towards different environmental impacts. Despite its apparent suitability, LCA has not previously been fully applied to the environmental impact modelling of open-water IMTA systems. The work presented in the following thesis advances this research front, by using LCA to explore the potential for environmental problem shifting occurring as a consequence of replacing intensive monoculture production, with IMTA. Comprehensive datasets have been acquired from the Chilean aquaculture industry, describing the production of aquafeed and Salmo salar, as well as for the production of the Phaeophytic macroalga, Macrocystis pyrifera, and the molluscan bivalve, Mytilus chilensis. Using LCA methodology, the production of salmon feed, and the production of S.salar, M.pyrifera and M.chilensis, have been assessed for their capacity to contribute towards a variety of global-scale, environmental impacts. IMTA consisting of either S.salar and M.pyrifera, S.salar and M.chilensis, or all three of these species, and combined at ratios required for a bioremediation efficiency of 100 %, 50%, or 20 % of either nitrogen or phosphorous emission from fish, is compared to the monoculture production of S.salar. The comparison is based upon a standardised functional unit, with each species produced through IMTA, being modelled as part of the reference flow required to fulfil the functional unit. Monoculture is compared to IMTA upon the basis of nutritional function, by using a functional unit of mass-adjusted protein content, and mass-adjusted economic value. The use of economic value is based upon the ‘best-case’ assumption, that it serves as a proxy for the total nutritional function that each product offers to human society. The LCAs presented in this study have produced a number of results. Salmon ingredients derived from agricultural crops and animals account for the majority (between 71 % to 98 %) of contributions towards the impacts of compound salmon feed. In general, agricultural crops ingredients contribute more to these impacts than do agricultural animal ingredients, and account for between 31 % and 87 % of the contributions from all ingredients and inputs. In contrast, the combined supply of fish meal and fish oil from capture fisheries is responsible for between 0.13 % and 11 % of all impacts. Vegetable oil accounts for the vast majority of contributions from ingredients derived from agricultural crops. Vegetable oil is modelled as a 50 : 50 blend of sunflower oil and rapeseed, oil, but sunflower oil accounts not only for most of the contributions from vegetable oil, it is responsible for over 50 % of the contributions that all agricultural crop based ingredients contributes towards some impact categories. Replacing sunflower oil with rapeseed oil reduces the contributions of salmon feed by between 6 % and 24 % across 10 out of the 11 impact categories. When compared upon the basis of equal weight, the contributions of fish oil are between 18 % and 99 % lower than those from rapeseed oil. The production of feed is responsible for the majority of contributions (between 32 % and 86 % ) to all impacts of salmon grow-out production. The production of salmon-smolts accounts for between 3 % and 18 %. The majority (64 %) of contributions towards the eutrophication potential of salmon production are from nutrient emissions, which are the result of fish metabolism, whilst nutrients released through the production of feed, the majority of these being from the agricultural production of crop and animals, account for 32 %. Feed production is also a major contributor to the impacts of land-based smolt production, but these contributions (between 12 % and 37 % across all impact categories) are of a lower magnitude than those from the supply of feed to the grow-out phase. Inputs of salt, and inputs of both electricity produced in a diesel power generator and obtained from the national electricity network, are also notable contributors (between 5 % and 67 %, 4 % and 29 %, and 2 % 47 %, respectively) towards the impacts of smolt-production. The main contributors towards the potential impacts of kelp grow-out production (excluding eutrophication potential) are the supply of infrastructure (between 14 % and 89 %), operation of a diesel-powered motorboat for maintenance purposes (between 1 % and 89 %), and the supply ‘of seeded cartridges’ (between 9 and 49 %). The major contributors from the production of ‘seeded cartriges’ in a land-based facility are the supply of electricity from the national electricity network, the supply of fresh water, and the treatment of waste water. The impact potentials of producing seed in this facility might be reduced if the scale of operation is increased. Removal of nitrogen and phosphorous upon the harvesting of kelp is calculated based upon kelp tissue contents of these nutrients. The harvesting of 200 tonnes ha / yr-1, results in a eutrophic potential with a negative value (-376.51 kg of phosphate equivalents). The removal of such a quantity of nutrients might be beneficial if the local marine environment is at risk of hypernutrification, but when no such problem is present, the potential for undesirable consequences of nutrient sequestration should be considered. The major contributor towards the impacts of mussels is the provision of infrastructure (between 25 % and 99.5 %, excluding eutrophication potential). Infrastructure is also responsible for the majority of contributions from mussel seed production. The provision of cotton mesh bags, which are used to aid attatchment of seed to drop-ropes in the grow-out phase, account for between 37% and 99 % of the contributions from the infrastructure from the grow-out phase. This result suggest that either the impacts of mussel production can be reduced by using an alternative material with lower environmental impact potentials, or the inventory data describing the producing of cottonmesh bags requires some improvement. The outcomes of the LCAs of the different IMTA scenarios, are interesting. The results show that choice of species, and the ratios of their combination as required for the different efficiencies of bioremediation, can have a significant effect upon the comparison between IMTA and monoculture. / The study demonstrates a potential for environmental problem shifting as being a consequence of IMTA, especially when the functional unit is mass-adjusted economic value. As bioremediation efficiency increases, contributions towards eutrophication decrease. However, this reduction is achieved at the cost of increasing the contributions of IMTA towards those impact categories, such as ‘ozone layer depletion,’ for which it has a greater contribution than does monoculture. In general, it cannot be concluded from these results that open-water IMTA represents a more sustainable alternative to the monoculture production of Atlantic salmon. The sustainability of IMTA is shown to be dependent upon a variety of trade-offs, between individual environmental impacts, and between these impacts and the nutritional function that the system is capable of providing.

Abstract Purpose: The purpose of this thesis was to examine to which extant the politically governed organization, Swedish association of local authorities and local regions (SALAR), has been mediatized. Furthermore the purpose was to examine how SALAR being a Meta-organization affected the mediatization process. To accomplish this the thesis studied how SALAR organized themselves internally in order to form opinion through the media in one of their prioritized issues. A further purpose was to equalize SALAR’s mediatization process with the mediatization process for the whole political system.  Method: This is a qualitative study which the gathered material has been collected through two types of methods, semi structured interviews and field observations. Material: A total of eight interviews were made distributed over three departments inside SALAR. Furthermore four observations were made to supplement the interviews. Findings: The general findings of this study shows that SALAR has been mediatized through organizing in way which signals adaptation to media logic. However, contrary too much of what the literature tells about political mediatization, SALAR adapts to media logic to be able to use the media as an arena for the messages and stories they want to tell. Which means that the adaption isn’t only forced but they are able to make the most of that adaption. SALAR from a Meta organizational perspective shows that it does not affect the actual mediatization process, only that using members as examples enforces the content, which later forms opinion. Concluding, no evidence can be found the supports the notion that SALAR’s mediatization process can be equalled to the meditization process for the whole political system. / Sammanfattning   Syfte: Syftet med uppsatsen var att undersöka i vilken grad den politiskt styrda organisation SKL blivit medialiserad. Dessutom studera hur SKL i egenskap av att vara metaorganisation påverkar hur denna medialisering sker. För att åstadkomma detta undersöks hur SKL organiserar sig internt för att kunna bedriva medial opinionsbildning inom en av deras prioriterade verksamhetsfrågor, ökat bostadsbyggande. Därtill var ett ytterligare syfte att likställa SKL:s medialiseringsprocess mot medialiseringsprocesserna för hela det politiska systemet.   Metod: Det här är en kvalitativ studie där insamling av det empiriska materialet har skett genom semi-strukturerade intervjuer och fältobservationer.   Material: Totalt åtta intervjuer genomfördes. Fyra tycken från avdelningen för kommunikation, tre från avdelningen tillväxt och samhällsbyggnad och en från avdelningen VD-stab. Därtill har fyra observationer genomförts för att komplettera de intervjuer som gjorts.   Resultat: Resultatet av undersökningen visar att SKL har blivit medialiserad utifrån två definierade medialiseringsfaser. Det betyder att SKL anpassar sig till medielogik för att kunna möta mediernas behov. Resultatet visar att denna anpassning görs för att kunna använda media som en arena för de budskap som man vill förmedla i opinionsbildande syften inom bostadsfrågan vilket skiljer sig från vad mycket av litteraturen om politisk medialisering säger. SKL som metaorganisationen har också inga stora problem med att hantera sina medlemmar in denna medialiseringsprocess och har heller ingen påverkan på hur den sker. Däremot kan SKL som metaorganisation förstärka sitt innehåll i de mediala produkter som produceras i syftet att vara opinionsbildande. Inga övertygande bevis kan dock inte göras för att se SKL:s medialisering som en representant för medialiseringen av det hela politiska systemet. Det här på grund av att SKL som organisationen har ett annat sätt att vara verksam på vilket gör att deras anpassning till medielogik inte med säkerhet går att säga är densamma som anda politiska institutionernas anpassning.

Mapping quantitative trait loci (QTL) for traits under consideration for genetic improvement is becoming more common for many aquatic species, including Atlantic salmon. The objective of the study was to map QTL associated with length, weight, shape, parr mark number and contrast in three F2 hybrid families of European and North American strains of Atlantic salmon using single nucleotide polymorphisms. GridQTL software was used to perform separate analyses for male and female linkage maps. Numerous highly significant QTL were detected for every trait. Locations of QTL differed based on age and map used. Some QTL locations for the analyzed traits were similar to those of other studies on purebred and backcross Atlantic salmon populations; however, many more QTL were detected in the hybrid F2’s. The amount of genetic variation in skin colour and pattern displayed within the transAtlantic F2 families greatly exceeded the ranges seen in nature. / NSERC Strategic Grant

Diss. (sammanfattning) Umeå : Sveriges lantbruksuniv., 2007. / Härtill 6 uppsatser.

Diss. (sammanfattning) Umeå : Sveriges lantbruksuniv., 2003. / Härtill 5 uppsatser.

En général, le métabolisme des poissons est estimé à des valeurs de température constantes, mais les effets de fluctuations journalières de température similaires à celles retrouvées en milieu naturel semblent peu connus. Les objectifs du présent mémoire sont de quantifier les effets de la température moyenne d’acclimatation et d’évaluer les effets de l’historique thermique des individus, sur les réponses métaboliques de tacons de saumon Atlantique (Salmo salar) aux fluctuations journalières de la température. Des tacons provenant de deux rivières, une fraîche et une chaude, ont été acclimatés à un maximum de quatre régimes thermiques (constant 15 °C ou 20 °C, fluctuant 15 °C ± 2.5 °C ou 20 °C ± 2.5 °C) et leur taux métabolique standard estimés par respirométrie par débit-intermittent. Les fluctuations journalières de température (15 °C ± 2.5 °C) près de l’optimum thermique pour cette espèce (16 °C) n’affectent pas le taux métabolique standard. À l’opposé, les fluctuations journalières de température plus chaudes (20 °C ± 2.5 °C) augmentent de 35.4% le taux métabolique standard des tacons de la rivière plus chaude, mais pas ceux des poissons de la rivière fraîche. Ainsi, la température moyenne à laquelle sont acclimatés les poissons peut affecter leur réponse métabolique aux fluctuations journalières de température, mais cette réponse peut varier entre populations provenant de rivières présentant des régimes thermiques différents. Enfin, grâce aux données de métabolisme précédemment estimées, un modèle de métabolisme standard a été développé pour des tacons de saumon Atlantique soumis à des fluctuations journalières de température. / Usually, fish metabolism is evaluated under constant values of temperature, but the effects of daily temperature fluctuations similar to those found in natural environment on metabolism seems to be much less understood. The goals of this study are to quantify the effects of the mean acclimation temperature and to assess the effects of the thermal history on the metabolic response of Atlantic salmon (Salmo salar) parr to daily fluctuations of water temperature. Atlantic salmon parr originating from two rivers, one cool and one relatively warm, were acclimated to up to four thermal regimes (constant 15 °C or 20 °C, daily fluctuating 15 °C ± 2.5 °C or 20 °C ± 2.5 °C) and their standard metabolic rate was estimated using intermittent-flow respirometry. Daily temperature fluctuations (15 °C ± 2.5 °C) near this species’ thermal optimum (16 °C) do not influence standard metabolic rate. In contrast, daily fluctuations of higher temperature (20 °C ± 2.5 °C) do increase standard metabolic rate by 35.4% for fish from the warmer river, but not for fish from the cooler river. Therefore, the mean temperature to which fish are acclimated may affect their responses to daily fluctuations of water temperature, but this response may vary between populations originating from rivers having different thermal regimes. Using standard metabolic rates previously estimated, a standard metabolic rate model was developed for Atlantic salmon parr exposed to daily fluctuations of temperature.

With a surface area of about 10,000 km², the Salar de Uyuni is the largest salt flat in the world. It is located at an altitude of 3,653 m on the Altiplano, a high plateau in the south of the Bolivian Andes. The Salar de Uyuni consists of an alternating sequence of highly porous salt layers (mainly composed of halite) and lacustrine clay sediments. The pore volume of the uppermost salt layer which has a thickness of up to 11 m is filled by brine. The brine contains high amounts of Mg, K, Li and B. The element lithium is an especially important raw material for the production of batteries. Thus, it plays an important role for the development of the electric mobility. With this background, extensive hydrogeological exploration activities were carried out at the Salar de Uyuni in the context of this dissertation. The hydraulic properties of the uppermost salt crust and the physical properties (density and viscosity) of the brine must be characterized. In order to do this, several core drillings were made, observation wells were installed, brine samples were taken and pumping tests were conducted between 2009 and 2012. The stratigraphic documentation of the obtained sediment cores provided insights about the deposit structure and the upper salt layer thickness. The determination of the salt core porosity was carried out by three different methods: (a) by using X-ray computed tomography, (b) gravimetrically by saturation with 2-octanol and (c) by completion of the core volume with plasticine and calculation of the porosity under consideration of the particle density of the salt. The laboratory investigations showed a depth-dependent porosity distribution in the upper salt layer. The uppermost 2 m were characterized by very high porosity values between 30 and 39%. However at greater depth, the total porosity decreases on average to 13.5%. Geochemical analyses of brine samples confirmed the general spatial distribution of the lithium concentrations as already published by previous studies. On the basis of the lithium distribution in the brine, the thickness of the upper salt layer and the depth-dependent porosity distribution, the total lithium deposit in the Salar de Uyuni was calculated to be about 7 million tons. The evaluation of the pumping tests under consideration of the density and viscosity of the pumped brine showed that the salt has a very high permeability in the horizontal direction. In contrast, flow-through experiments on drill cores indicated a clear vertical anisotropy of the permeability. This is caused by the inhomogeneous sediment stratification for instance by interbedded fine gypsum or clay lamina. Thus, horizontal brine movements are possible, but a deep vertical flow component can hardly be expected. This assumption is confirmed by radiocarbon dating the brine samples from different salt depths. The influence of annual floods during the rainy season could be observed by long-term brine level measurements. Throughout the time-series analysis, distinct periodic brine fluctuations of a few centimeters per day could be identified during the dry season. These daily fluctuations indicated an impermeable crust probably formed by the evaporation of near-surface brine and subsequent crystallization of salts in the pore volume. Thus, daily temperature and atmospheric pressure changes could directly affect the brine level. Due to the extensive hydrogeological investigations, this dissertation contributes to the essential understanding of the hydraulic conditions in the Salar de Uyuni. / Mit einer Fläche von rund 10.000 km² ist der Salar de Uyuni die größte Salz-Ton-Ebene der Welt. Er befindet sich in einer Höhe von 3653 m NN im Altiplano, einer Hochebene im Süden der bolivianischen Anden. Der Salar de Uyuni besteht aus einer Wechsellagerung von hochporösen Salzschichten (überwiegend aus Halit bestehend) und lakustrinen Tonsedimenten. Die Porenräume der obersten bis zu 11 m mächtigen Salzschicht sind mit einer Sole gefüllt, die hohe Gehalte an Mg, K, Li und B aufweist. Insbesondere das Element Lithium ist ein wichtiger Rohstoff u.a. für die Herstellung von Batterien und spielt damit eine bedeutende Rolle bei der Entwicklung der Elektromobilität. Vor diesem Hintergrund wurden im Rahmen der vorliegenden Dissertation umfassende hydrogeologische Erkundungsarbeiten am Salar de Uyuni durchgeführt, um die hydraulischen Eigenschaften der obersten Salzkruste sowie die physikalischen Eigenschaften (Dichte und Viskosität) der Sole zu charakterisieren. Dazu wurden zwischen 2009 und 2012 zahlreiche Kernbohrungen abgeteuft, Beobachtungsbrunnen installiert, Soleproben entnommen und Pumpversuche durchgeführt. Die stratigraphische Dokumentation der gewonnenen Bohrkerne lieferte Erkenntnisse zur Ablagerungsstruktur und zur Mächtigkeitsverteilung der obersten Salzschicht. Die Bestimmung der Porosität der Salzkerne erfolgte mit drei verschiedenen Methoden: (a) mittels Computertomographie, (b) gravimetrisch durch Aufsättigung mit 2-Oktanol und (c) durch Volumenergänzung der Kernproben mit Plastilin und Berechnung der Porosität unter Einbeziehung der Reindichte des Salzes. Die Laboruntersuchungen zeigten eine tiefenabhängige Porositätsverteilung in der obersten Salzschicht. Während die obersten 2 m durch sehr hohe Porositäten zwischen 30 und 39% gekennzeichnet sind, nimmt die Gesamtporosität in größerer Tiefe auf durchschnittlich 13.5% ab. Geochemische Analysen von Soleproben bestätigten die grundsätzliche räumliche Verteilung der Lithium-Konzentrationen, wie sie bereits durch frühere Studien veröffentlicht wurde. Auf Basis der Lithium-Verteilung in der Sole, der Mächtigkeit der oberen Salzschicht sowie der tiefenabhängigen Porositätsverteilung wurde ein Lithium-Vorkommen im Salar de Uyuni von rund 7 Millionen Tonnen berechnet. Die Auswertung der Pumpversuche unter Berücksichtigung der Dichte und Viskosität der geförderten Sole zeigte, dass das Salz eine sehr hohe Permeabilität in horizontaler Richtung aufweist. Allerdings zeigten Durchströmungsversuche an Bohrkernen eine deutliche vertikale Anisotropie der Permeabilität, was auf die inhomogene Sedimentschichtung durch z.B. eingeschaltete feine Gips- oder Tonschichten zurückzuführen ist. Somit sind zwar horizontale Solebewegungen möglich, jedoch ist kaum mit einer tiefgreifenden vertikalen Strömungskomponente in der Salzschicht zu rechnen. Diese Vermutung wird durch 14C-Altersdatierungen von Soleproben aus unterschiedlichen Tiefen des Salzes bestätigt. Der Einfluss der jährlichen Überschwemmungen während der Regenzeit konnte anhand von Langzeitmessungen des Solespiegels beobachtet werden. Im Zuge der Zeitreihen-Analyse zeigten sich zudem ausgeprägte periodische Tageschwankungen von einigen Zentimetern während der Trockenzeit. Diese deuten darauf hin, dass durch Verdunstung oberflächennaher Sole und damit einhergehender Kristallisation von Salzen im Porenraum eine undurchlässige Kruste entsteht. Dadurch haben tägliche Temperatur- und Luftdruckschwankungen direkten Einfluss auf den Solespiegel. Die vorliegende Dissertation trägt aufgrund der umfangreichen hydrogeologischen Untersuchungen wesentlich zum Verständnis der hydraulischen Verhältnisse im Salar de Uyuni bei. / Con una superficie de aproximadamente 10.000 kilómetros cuadrados el Salar de Uyuni es el mayor lago de sal en el mundo. Se encuentra a una altura de 3.653 m sobre el nivel del mar en el altiplano en el sur de los Andes bolivianos. El Salar de Uyuni consiste en una alternancia de capas de sal altamente porosa (que consiste predominantemente de halita) y lacustre sedimentos de arcilla. La capa superior de sal tiene un espesor de hasta 11 metros. Los espacios de poros del sal se llenan con una salmuera que contiene altos contenidos de Mg, K, Li y B. En particular, el elemento litio constituye una importante materia prima para la producción de baterías que son utilizadas en la construcción de vehículos eléctricos. Bajo estos antecedentes y en el contexto de la presente tesis, se han desarrollado extensas actividades de exploración hidrogeológica en el Salar de Uyuni. Las propiedades hidráulicas de la corteza de sal superior y las propiedades físicas (densidad y viscosidad) de la salmuera debían caracterizadas. Para ello, entre 2009 y 2012 se realizaron varios perforaciones con la finalidad de obtener muestras de núcleos, se instalaron pozos de supervisión, se realizaron pruebas de bombeo y se tomaron muestras de salmuera. La documentación estratigráfica de los núcleos de perforacíon proporciona conocimientos para la estructura de los depósitos y para el espesor del superior capa de sal. La porosidad de los núcleos de sal fue determinada por medio de tres métodos diferentes: (a) por tomografía computarizada (TC), (b) gravimétricamente mediante la saturación con 2-octanol y (c) mediante de compleción del volumen del núcleo con plastilina y computacíon de la porosidad en atención a la densidad real del sal. Las investigaciones de laboratorio demostraron una distribución de la porosidad dependiente de la profundidad en la capa superior de sal. Mientras que la parte superior 2 m se caracterizan por altas porosidades entre el 30 y 39%, la porosidad total decrese en una profundidad mayor a un promedio de 13,5%. Los análisis geoquímicos de muestras de salmuera confirmaron la distribución espacial fundamental de las concentraciones de litio, como ya se ha publicado por estudios anteriores. A base de la distribución de litio en la salmuera, el espesor de la capa superior de sal, y la porosidad dependiente de la profundidad determinaron que todos los recursos minerales de litio en el salar de Uyuni son alrededor de 7 millones de toneladas. La evaluación de las pruebas de bombeo en consideración de la densidad y la viscosidad de la salmuera transmitido mostró que la sal generalmente tiene una permeabilidad muy alta. Pero, las pruebas de flujo en muestras de núcleo mostró una anisotropía significativa de la permeabilidad con la profundidad, que se debe a una estratificación de sedimentos no homogénea debido las láminas finas de yeso o arcilla intercaladas. Por lo tanto, es correcto que los movimientos de salmuera horizontales son posibles, pero es poco probable que movimientos verticales de salmuera ocurran. Esta hipótesis se ve confirmada por la datación por radiocarbono de muestras de salmuera de diferentes profundidades de la sal. El impacto de las inundaciones anuales durante la estación lluviosa se puede observar a partir de las mediciones a largo plazo del nivel de salmuera. En el curso del análisis de series de tiempo también mostraron pronunciadas variaciones diarias periódicas de unos pocos centímetros en la estación seca. Esto sugiere que hay una corteza impermeable que se forma por evaporación de salmuera cerca de la superficie y la cristalización de sales en el espacio de los poros. En esta manera, las fluctuaciones diarias de temperatura y de preción de aire influyen directamente el nivel de salmuera. Gracias a las extensas investigaciones hidrogeológicas realizadas, la presente tesis contribuye significativamente a la comprensión de las condiciones hidráulicas en el Salar de Uyuni.

Efficient control of sea lice is a major challenge for the sustainable production of farmed Atlantic salmon (Salmo salar (Linnaeus, 1758)). These marine ectoparasites feed on mucus, skin and blood of their hosts, thereby reducing the salmon’s growth rate and overall health. In the northern hemisphere, the most prevalent species is Lepeophtheirus salmonis (Krøyer, 1837). In 2006, global costs of sea lice infections are estimated to have exceeded €300 million, with the majority spent on a limited number of chemical delousing agents. Emamectin benzoate (EMB; SLICE®), an avermectin, has been widely used since its introduction in 2000, due to its convenient administration as an in-feed medication and its high efficacy against all parasitic stages of L. salmonis. However, over-reliance on a single or limited range of medicines favours the emergence of drug resistance and, as a result, the efficacy of this compound in treating L. salmonis has decreased in recent years, as reported from e.g. Chile, Norway, Scotland and Canada. Declining efficacy underlines the need for an improved understanding of the molecular mechanisms underlying EMB drug resistance in L. salmonis. Elucidation of these mechanisms would allow for improved monitoring tools, earlier detection of developing resistance, extended usability of current delousing agents and development of new parasiticides. The work described in this thesis sets out to examine the molecular mechanisms underlying EMB resistance in L. salmonis. In earlier studies, research in nematodes and arthropods has linked drug efflux transporters belonging to the family of ATP-binding cassette (ABC) transporters to ivermectin (IVM) resistance, a parasiticide with high chemical similarity to EMB. ABC transporters such as permeability glycoprotein (P-gp), transport a wide range of substrates, including drugs, and have been suggested to provide a potential molecular mechanism through which EMB resistance might be mediated in sea lice. As an example of such mechanisms, increased expression of P-gp is one of the causative factors for drug resistance in human cancer cells and avermectin resistance in nematode parasites such as Caenorhabditis elegans or Haemonchus contortus. Initial research involved screening for novel salmon lice P-gps that might contribute to EMB resistance. A novel P-gp, SL-PGY1, was discovered using a combined bioinformatic and molecular biological approach. The expression was compared in two well-characterised L. salmonis strains differing in their susceptibility to EMB (S = susceptible, R = resistant). Prior to EMB exposure, mRNA levels did not differ from each other, while, after 24 h exposure, a 2.9-fold increase in SL-PGY1 mRNA expression was observed in the R strain. SL-PGY1 appears not to be a major factor contributing to reduced EMB susceptibility, although it could play a role, as expression levels increased upon exposure to EMB. A further four additional drug transporters (ABC C subfamily) were also discovered showing high homology to multidrug-resistance proteins (MRP). The relative expression levels of each MRP was compared in the strains S and R, before and after exposure to EMB. No significant changes were found in their expression patterns. If ABC drug transporters mediate the efflux of EMB and thereby reduce the intracellular concentrations of the drug in exposed animals, the inhibition of those ABC drug transporters was expected to lead to higher intracellular levels of EMB. This could result in an enhanced toxic effect when EMB is co-administered with an inhibitor. Two known inhibitors of human P-gps and MRPs, cyclosporin A (CSA) and verapamil (VER), were co-administered with EMB. CSA increased the toxic effect of EMB in both tested strains, implying that the targets of CSA are expressed at comparable levels and that they may be part of the mechanism conferring EMB resistance. VER increased the toxic effect of EMB in the R strain, but had no significant effects on the S strain. This implies that the expression of factors inhibited by VER differs between the two L. salmonis strains. It is hypothesised that a number of ABC transporters with distinct, yet overlapping patterns of inhibitor specificity are affected by those inhibitors. The search for drug-resistance conferring genes was complemented with a systematic, genome-wide survey of ABC transporters in L. salmonis to find additional members of this important gene family. Next-generation high-throughput RNA sequencing (RNA-seq) was employed to assemble a reference transcriptome from pooled total RNA of salmon lice at different development stages. The transcriptome was assembled against the L. salmonis genome and annotated. Thirty-nine putative ABC transporters were found. Of further interest were transcripts of the subfamily B, C and G, as they contain drug-transporting ABC proteins. For the ABC B subfamily, one full (SL-PGY1) and three half transporter transcripts were found. Only full transporters are known to transport drugs and SL-PGY1 is apparently not a major factor contributing to EMB resistance. Fourteen ABCC sequences were found – 11 MRPs and 3 homologues to sulfonylurea receptors. Of interest are MRPs, as they contribute to drug detoxification in humans and invertebrates. Four MRPs had been identified previously and their expression ratios did not differ between S and R strain parasites. Seven sequences belonging to ABCG subfamily were found. However, none of the L. salmonis ABCG transcripts identified showed sufficient homology to known drug transporters in other species. With the currently limited understanding of the mechanisms conferring EMB resistance, monitoring the susceptibility of L. salmonis subpopulations is essential. Dose-response bioassays are currently widely used. Tests with pre-adult II or adult parasites requires relatively large numbers of parasites (~150) to conduct this type of bioassay, which may not always be available. Addressing this issue, we tested the feasibility of a single-dose bioassay (requiring fewer test animals than dose-response bioassays) to discriminate between L. salmonis strains with differing EMB susceptibility. This alternative approach uses time-course toxicity analysis, where the toxic effect of EMB is monitored over time. After clearly defining the effect criteria, we found that it is possible to discriminate between those L. salmonis strains. However, while requiring fewer test animals, time course toxicity analysis is more labour-intensive, but the alternative design can be suitable under certain circumstances. The work reported here has provided new knowledge concerning the mechanisms of EMB resistance in sea lice. Several novel putative drug transporters have been identified, an important first step toward unravelling the complex interactions of genes involved in EMB resistance in this commercially important parasite.

Considering the response of organisms to their environment is difficult; it is made more so if population numbers cannot be closely monitored. In such cases different methods of population assessment are required. This thesis uses lipids as a measure of Atlantic salmon (Salmo salar L.) quality and investigates its usefulness in indicating fish condition. The first study examines the relationship between fish total lipid content and W[sub]R condition factor; this study clearly demonstrates that there is a significant positive relationship between the condition factor of a fish and its total lipid content. In the following study the lipid storage between the different tissues of the Atlantic salmon is considered. This indicates that the red muscle and the adipose tissues hold higher concentrations of lipid than the white muscle. However, the white muscle makes up the majority of lipid tissue mass in the Atlantic salmon so contains the bulk of stored lipid in a fish, at low concentration. The next study investigates the effect of spawning on Atlantic salmon condition. Salmon can be seen preferentially conserving lipid in their musculature and drawing down the lipid stored in their adipose tissues. The following study looked at one key lipid group, triacylglycerides, in salmon. Triacylglycerides are energetically important in fish and this study found that the spawning process depleted triacylglyceride reserves, but that the red muscle conserves triacylglycerides even after spawning. The final study considers the relationship between maternal quality and egg quality, identifying that longer Atlantic salmon produce eggs with more lipid after spawning migration. Egg lipid concentrations were comparably maintained between fish. Monitoring quality in this way is a useful tool to determine population wellbeing and help indicate where populations are compromised.