Thesis (Ph. D.)--Oregon State University, 2008. / Printout. Includes bibliographical references (leaves 139-163). Also available on the World Wide Web.

The purpose of this investigation is to present a new account of the genus Saprolegnia, to bring together in one paper the published studies dealing with the morphology and taxonomy of the various species, and to add to this information conclusions based upon observations of living material. The majority of living specimens was obtained from 864 collections of water and soil made by the writer and others in eleven states and in Australia, England and India. The procedures used in the isolation and propagation of these fungi is presented. All isolates studied were propagated on a chemically defined medium, as well as, on halves of sterilized hemp seed (Cannabis sativa). Reliable taxonomic criteria are used in the keys provided for the identification of species. As a result of this investigation, fifteen species are recognized as valid members. Three new combinations are proposed. Four species are doubtful and eighteen taxa are excluded from the genus. / Ph. D.

Fish skin is a metabolically active tissue that responds quickly to stressors and is the first line of defence against physical damage. Club cells, characteristic components of Ostariophysian fish skin, release their contents into the surrounding water upon rupture (e.g. during predation). These chemical cues act as public information of predation risk. Despite the assumption that club cells evolved under the selective force of predation, studies demonstrated that predation has no effect on club cell investment. Rather, club cell production is stimulated by skin penetrating pathogens and parasites. The experiments in this thesis investigate the responses of fish skin to manipulated pathogen risk. In the first experiment, fathead minnows (Pimephales promelas) were exposed to varying infective risk from two pathogen species that differ in pathogenicity, Saprolegnia ferax and S. parasitica. Although there was no difference in club cell density between fish exposed to the two Saprolegnia species, fish exposed to high concentrations of the pathogens had smaller club cells than those exposed to low concentrations. These results are the first to demonstrate a pathogen effect on the size of club cells. The second experiment investigated whether the physical presence of the pathogen was necessary for an alteration in epidermal parameters or whether Saprolegnia parastitica conditioned water was the only stimulus necessary to evoke a change. Results indicated a lack of treatment effect on club cell density, club cell size or epidermal thickness. The third experiment investigated the timing of club cell changes following a pathogen challenge. Although fish exposed to the Saprolegnia ferax treatment had higher club cell density than fish exposed to the control, there was no difference in club cell density between fish sacrificed on day 3, 6, 9 or 12. A portion of the test population for the third experiment was infected with black spot disease. When analyzed separately, trematode infected fish had smaller club cells than those that were uninfected. In light of inconsistent epidermal responses to pathogen challenges, and comparison with other studies, assessment of environmental stressors and population differences that may affect experimental outcomes and potentially interact with infectious agents is advised.

Major Histocompatibility Complex (MHC) receptors serve a critical role in self/non-self recognition through the presentation of peptide antigen to circulating T lymphocytes and are also believed to play a role in mate selection. Through the development of antibodies to MHC homologues in trout, this report demonstrates the presence of MHC expression in germ cells, as well as a soluble form in seminal fluid. What role these immune molecules may perform in reproduction and mate selection is discussed. In addition, as ectotherms, fish are often subjected to low temperatures. Previous data indicates that the expression of these genes is abolished by low temperatures. Employing these same antibodies, this report further demonstrates that trout maintain the expression of MH I and its critical light chain component, beta-2-microglobulin when subjected to 2oC for 10 days. Expression of the MH II receptor sub-units however, was sensitive to both confinement stress and low-temperature in vivo, as well as to factors secreted from a known fungal pathogen in cultured macrophage. As the cause of "winter kill", Saprolegniales cultures induced homotypic aggregation and pro-inflammatory gene expression in the macrophage cell line, RTS11 as well as down-regulation of MH II. Though no evidence of fungal toxins was evident, fungal spore size appeared to exceed macrophage phagocytic capabilities. Taken together, such a loss of MH II expression at low temperature may allow for establishment of fungal and bacterial diseases and that upon the return to warmer temperatures, saprolegniales have the ability to maintain MH II down-regulation and evade immune recognition. Concurrent to the study of MH expression, this report includes the first cloning and characterization of calreticulin (CRT) in fish. Like its mammalian homologue and primary chaperone to MHC receptors and other immune proteins, trout CRT appears to be a single copy gene with ubiquitous tissue distribution, displaying anomalous migration as a doublet with relative molecular mass of 60kD. Despite its promoter containing endoplasmic reticulum stress elements (ERSE), trout CRT expression did not increase upon treatment with several calcium homeostasis antagonists. Treatment of peripheral blood leukocytes with phytohemaglutinin did reveal a qualitative increase in cell surface expression, as seen in mammals; however, cellular protein levels did not change, suggesting that, in trout, CRT function may be regulated through cellular sub-localization, rather than through changes in gene expression, as it is in mammals.

Major Histocompatibility Complex (MHC) receptors serve a critical role in self/non-self recognition through the presentation of peptide antigen to circulating T lymphocytes and are also believed to play a role in mate selection. Through the development of antibodies to MHC homologues in trout, this report demonstrates the presence of MHC expression in germ cells, as well as a soluble form in seminal fluid. What role these immune molecules may perform in reproduction and mate selection is discussed. In addition, as ectotherms, fish are often subjected to low temperatures. Previous data indicates that the expression of these genes is abolished by low temperatures. Employing these same antibodies, this report further demonstrates that trout maintain the expression of MH I and its critical light chain component, beta-2-microglobulin when subjected to 2oC for 10 days. Expression of the MH II receptor sub-units however, was sensitive to both confinement stress and low-temperature in vivo, as well as to factors secreted from a known fungal pathogen in cultured macrophage. As the cause of "winter kill", Saprolegniales cultures induced homotypic aggregation and pro-inflammatory gene expression in the macrophage cell line, RTS11 as well as down-regulation of MH II. Though no evidence of fungal toxins was evident, fungal spore size appeared to exceed macrophage phagocytic capabilities. Taken together, such a loss of MH II expression at low temperature may allow for establishment of fungal and bacterial diseases and that upon the return to warmer temperatures, saprolegniales have the ability to maintain MH II down-regulation and evade immune recognition. Concurrent to the study of MH expression, this report includes the first cloning and characterization of calreticulin (CRT) in fish. Like its mammalian homologue and primary chaperone to MHC receptors and other immune proteins, trout CRT appears to be a single copy gene with ubiquitous tissue distribution, displaying anomalous migration as a doublet with relative molecular mass of 60kD. Despite its promoter containing endoplasmic reticulum stress elements (ERSE), trout CRT expression did not increase upon treatment with several calcium homeostasis antagonists. Treatment of peripheral blood leukocytes with phytohemaglutinin did reveal a qualitative increase in cell surface expression, as seen in mammals; however, cellular protein levels did not change, suggesting that, in trout, CRT function may be regulated through cellular sub-localization, rather than through changes in gene expression, as it is in mammals.

Fish skin is a metabolically active tissue that responds quickly to stressors and is the first line of defence against physical damage. Club cells, characteristic components of Ostariophysian fish skin, release their contents into the surrounding water upon rupture (e.g. during predation). These chemical cues act as public information of predation risk. Despite the assumption that club cells evolved under the selective force of predation, studies demonstrated that predation has no effect on club cell investment. Rather, club cell production is stimulated by skin penetrating pathogens and parasites. The experiments in this thesis investigate the responses of fish skin to manipulated pathogen risk. In the first experiment, fathead minnows (Pimephales promelas) were exposed to varying infective risk from two pathogen species that differ in pathogenicity, Saprolegnia ferax and S. parasitica. Although there was no difference in club cell density between fish exposed to the two Saprolegnia species, fish exposed to high concentrations of the pathogens had smaller club cells than those exposed to low concentrations. These results are the first to demonstrate a pathogen effect on the size of club cells. The second experiment investigated whether the physical presence of the pathogen was necessary for an alteration in epidermal parameters or whether Saprolegnia parastitica conditioned water was the only stimulus necessary to evoke a change. Results indicated a lack of treatment effect on club cell density, club cell size or epidermal thickness. The third experiment investigated the timing of club cell changes following a pathogen challenge. Although fish exposed to the Saprolegnia ferax treatment had higher club cell density than fish exposed to the control, there was no difference in club cell density between fish sacrificed on day 3, 6, 9 or 12. A portion of the test population for the third experiment was infected with black spot disease. When analyzed separately, trematode infected fish had smaller club cells than those that were uninfected. In light of inconsistent epidermal responses to pathogen challenges, and comparison with other studies, assessment of environmental stressors and population differences that may affect experimental outcomes and potentially interact with infectious agents is advised.

This study consisted of several experiments designed to compare the ability of two species of fungi, Saprolegnia ferax and S. parasitica to grow on two species of fish, smallmouth bass (Micropterus dolomieui) and goldfish (Carassius auratus), and to determine the criteria necessary for the development of these infections. The results indicate that water in the fish tanks must be slightly acid (pH 6), warm (22°C), nonmoving, and that the fish must be wounded in order for fungal infection to occur. Cool water (18°C) and moving water, caused by aeration and filtration, are detrimental to fungal colony formation so that no infection occurs. Both S. ferax and S. parasitica infected both species of fish, on an average of three days after innoculation. The S. ferax infected a higher percentage of both fishes than did the S. parasitica. The difference in susceptibility of the two fish species to the fungi was negligible.

Saprolegnia parasitica est une moisissure aquatique responsable des infections fongiques chez les poissons d’eau douce. Auparavant, ces infections étaient traitées au vert de malachite jusqu’à qu’il soit interdit à cause de ses propriétés cancérigènes. Les nouveaux enjeux de la recherche sont donc le développement de produits naturels pour prévenir et contrôler S. parasitica. Les expériences, in vitro, consistaient à déterminer la concentration minimale d’inhibition (CMI) par la méthode de graines de chanvre. Les expériences par bain, in vivo, consistaient à évaluer l’efficacité des produits sur des alevins infectés par S. parasitica. Le Neemazal WSP 5%, le Rhus typhina JN02141A et la bactérie Burkholderia cepacia ont présenté une activité antifongique contre S. parasitica. Cependant, le Rhus typhina JN02141A s’est avéré inefficace en présence d’alevins infectés par S. parasitica. Les prochaines étapes seraient donc la recherche des ingrédients actifs et de les tester sur des alevins infectés par S. parasitica. / Saprolegnia parasitica is a water mold responsible of the fungal infections of fish in fresh water environments. Previously, these infections were treated with malachite green until it is banned due to its carcinogenic properties. Novel research avenues include the development of natural products to prevent and control S. parasitica. The purpose of the experiments in vitro was to determine the minimum inhibitory concentration (MIC) by the Hempseed MicroPlate (HeMP) – method. Experiments in bath in vivo were to assess the effectiveness of products on fry infected with S. parasitica. Neemazal WSP 5%, Rhus typhina JN02141A, and Burkholderia cepacia showed antifungal activity against S. parasitica. However, Rhus typhina JN02141A was ineffective on fry infected with S. parasitica. The further research is to identify the active ingredients and test them on fry infected with S. parasitica.

<p>Oomycetes have long been considered as a separate class within the kingdom Fungi, but they are in fact closer to brown algae. They are currently classified in the Stramenopile eukaryotic kingdom, which includes heterokont algae and water molds. The major cell wall polysaccharides in Oomycetes are b-(1à3) and b-(1à6)-glucans, as well as cellulose, which has never been reported in any fungal species. Chitin - the major cell wall polysaccharide in fungi - occurs in minor amounts in the walls of some Oomycetes. Some Oomycete species are pathogens of great economical importance. For example, species of the genus <em>Phytophthora </em>are well studied plant pathogens that cause considerable economical losses in agriculture. Saprolegniosis, a fish disease caused by species from the genus <em>Saprolegnia</em>, is a major problem in the aquaculture industry and represents a threat to populations of salmonids in natural habitats. Currently, there are no chemicals available that are at the same time efficient Oomycete inhibitors, environmentally friendly and safe for human consumption of treated fishes. The biosynthesis of cellulose in Oomycetes is poorly understood, even though this biochemical pathway represents a potential target for new Oomycete inhibitors. In this work, cellulose biosynthesis was investigated in two selected Oomycetes, the plant pathogen <em>Phytophthora infestans</em> and the fish pathogen <em>Saprolegnia monoica</em>.</p><p> </p><p>A new Oomycete <em>CesA</em> gene family was identified. It contains four homologues designated as <em>CesA1, CesA2, CesA3</em> and <em>CesA4</em>. The gene products of <em>CesA1, 2</em> and <em>4 </em>contain Pleckstrin Homology domains located at the N-terminus. This represents a novel feature, unique to the Oomycete <em>CesA </em>genes. <em>CesA3</em> is the dominantly expressed <em>CesA </em>homologue in the mycelium of both <em>S. monoica</em> and <em>P. infestans</em>, while <em>CesA1</em> and<em> CesA2</em> are up-regulated in virulent life stages of <em>P. infestans</em>. <em>CesA4</em> was expressed only in minute amounts in all investigated types of cells. Gene silencing by RNA interference of the whole <em>CesA</em> gene family in <em>P. infestans</em> lead to decreased amounts of cellulose in the cell wall. The inhibitors of cellulose synthesis DCB and Congo Red had an up-regulating effect on <em>SmCesA</em> gene expression, which was accompanied by an increased b-glucan synthase activity <em>in vitro</em>. In addition, these inhibitors slowed down the growth of the mycelium from <em>S. monoica</em>. Zoospores from <em>P. infestans</em> treated with DCB were unable to infect potato leaves and showed aberrant cell wall morphologies similar to those obtained by silencing the <em>CesA</em> gene family.</p><p>Altogether these results show that at least some of the <em>CesA1-4</em> genes are involved in cellulose biosynthesis and that the synthesis of cellulose is crucial for infection of potato by <em>P. infestans</em>.</p><p> </p>

Several oomycete species of the genus Saprolegnia are recognized as devastating fish pathogens and are responsible for the loss of millions of fish annually for the aquaculture industry. Until recently, these pathogens were kept in check using malachite green; however, due to its toxicity, this chemical has now been banned from use. Saprolegnia parasitica is recognized as the major pathogen of aquaculture fish species. The industry is struggling to predict and control S. parasitica outbreaks in fish hatcheries and there is a need for new knowledge regarding the population genetic structure of this pathogen. Random amplified microsatellites were used to compare isolates of S. parasitica collected from a variety of hatchery locations during the period of November 2009 - August 2011, in order to determine the level of genetic variability and determine changes in genetic diversity over time. Allele frequencies of scored characters were graphically compared. Population genetic diversity was measured using Nei’s genetic distance, Shannon’s Information Index, number of polymorphic loci and phylogenetic trees. Due to the presence of Saprolegnia parasitica in the facilities tested, it appears to be ubiquitous in aquaculture facilities and treatment and prevention will be an ongoing concern in aquaculture management. Overall, genetic diversity of S. parasitica isolates was determined to be low with at least some sexual recombination occurring over time. There was a diversity of genotypes collected from the same hatchery on a single day, indicating there was not a single genotype present at a given time point. Genetic profiling, such as used here, could provide facility managers with a new approach to develop a series of best practices to control sporadic outbreaks of disease. Use of these genetic markers and close monitoring of S. parasitica genotypes will permit early detection and sanitation protocols. / Graduate / 2015-04-24 / 0476 / 0792 / 0369 / cren06@uvic.ca