The overall objective of my thesis research was to develop methodologies for assessing effects of mining effluents on pristine and sensitive northern rivers. I used a multi-trophic level approach in field studies to evaluate current monitoring methods and to determine whether metal mining activities had affected two otherwise pristine rivers that flow into the South Nahanni River, NWT; a World Heritage Site. Upstream reference conditions in the rivers were compared to sites downstream and further downstream of mines. The endpoints evaluated included concentrations of metals in river water, sediments and liver and flesh of slimy sculpin (Cottus cognatus); benthic algal and macroinvertebrate abundance, richness, diversity, and community composition; and various slimy sculpin measures. Elevated concentrations of copper (p=0.002)and iron (p=0.001) in liver tissue of sculpin from the Flat River were associated with high concentrations of mine-derived iron in river water and copper in sediments that were above national guidelines. In addition, sites downstream of the mine on the Flat River had increased algal abundances (p=0.002) and altered benthic macroinvertebrate communities ((p<0.001) whereas the sites downstream of the mine on Prairie Creek had increased benthic macroinvertebrate taxa richness (p=0.050) and improved sculpin condition (males: p=0.008; females: p=0.001). Biological differences in both rivers were consistent with mild enrichment of the rivers downstream of current and historical mining activity. Although the effects of mining activities on riverine biota in these northern rivers are currently limited, results of this research show that there is potential for effects to occur with proposed growth in mining activities.<p> Laboratory exposures were conducted using slimy sculpin, identified as a sentinel fish species in pristine northern rivers, to identify alternative methods for assessing toxicity of contaminants of concern in mining effluents. Ammonia was selected for the exposures based on effluent characteristics of northern mining effluents. Ammonia is known to be an important toxicant in aquatic environments. Although ammonia toxicity has been well studied in many fish species, effects of chronic exposure of slimy sculpin, a critical biomonitoring species for northern aquatic habitats, are not well known. Slimy sculpin were exposed to six concentrations of un-ionized ammonia relevant to concentrations found in northern mining effluents: control (0 ppm), 0.278 ppm, 0.556 ppm, 0.834 ppm, 1.112 ppm, and 1.668 ppm. An LC50 of 1.529 ppm was calculated from mortality data. Histopathological examination of gills indicated significant tissue damage, measured as lamellar fusion and epithelial lifting, at 0.834, 1.112, and 1.668 ppm. Using gill endpoints, NOEC and LOEC were calculated as 0.556 ppm and 0.834 ppm respectively. An EC50 of 0.775 ppm was determined for lamellar fusion and an EC50 of 0.842 ppm for epithelial lifting. Hemorrhage of gills was present in mortalities which occurred at 1.668 ppm of un-ionized ammonia. A significant decrease in liver somatic index (LSI) was seen in both male and female fish at 0.834 and 1.112 ppm, respectively. Gonadosomatic index (GSI) in female fish significantly increased at 1.668 ppm un-ionized ammonia with an associated significant increase in total whole body testosterone concentrations. GSI in male fish also significantly increased at 1.668 ppm but no differences were seen in testosterone concentrations. No significant differences were seen in gonad histopathological assessments or condition factor. Results from this study indicate that ammonia concentrations commonly reported in northern mine effluents hold potential to affect the health of slimy sculpin including acute, chronic, histological and endocrine endpoints. <p> Results from both the field study and laboratory exposures provide direction for future monitoring programs in pristine northern rivers and emphasize the importance of monitoring tools to detect change in these ecosystems. I recommend that monitoring of northern pristine rivers focus on a multi-trophic monitoring approach including indicators in algal and benthic macroinvertebrate communities due to their responsiveness. Laboratory exposures using slimy sculpin should be considered to obtain toxicological information for northern contaminants of concern. Gill histopathology endpoints may be a more sensitive indicator for detecting effects in slimy sculpin exposed to ammonia than traditional chronic endpoints. I also recommend monitoring of metal burdens in periphyton and benthic invertebrates for assessment of exposure to mine effluent and causal association in areas of low fish abundance.

The overall objective of my thesis research was to develop methodologies for assessing effects of mining effluents on pristine and sensitive northern rivers. I used a multi-trophic level approach in field studies to evaluate current monitoring methods and to determine whether metal mining activities had affected two otherwise pristine rivers that flow into the South Nahanni River, NWT; a World Heritage Site. Upstream reference conditions in the rivers were compared to sites downstream and further downstream of mines. The endpoints evaluated included concentrations of metals in river water, sediments and liver and flesh of slimy sculpin (Cottus cognatus); benthic algal and macroinvertebrate abundance, richness, diversity, and community composition; and various slimy sculpin measures. Elevated concentrations of copper (p=0.002)and iron (p=0.001) in liver tissue of sculpin from the Flat River were associated with high concentrations of mine-derived iron in river water and copper in sediments that were above national guidelines. In addition, sites downstream of the mine on the Flat River had increased algal abundances (p=0.002) and altered benthic macroinvertebrate communities ((p<0.001) whereas the sites downstream of the mine on Prairie Creek had increased benthic macroinvertebrate taxa richness (p=0.050) and improved sculpin condition (males: p=0.008; females: p=0.001). Biological differences in both rivers were consistent with mild enrichment of the rivers downstream of current and historical mining activity. Although the effects of mining activities on riverine biota in these northern rivers are currently limited, results of this research show that there is potential for effects to occur with proposed growth in mining activities.<p> Laboratory exposures were conducted using slimy sculpin, identified as a sentinel fish species in pristine northern rivers, to identify alternative methods for assessing toxicity of contaminants of concern in mining effluents. Ammonia was selected for the exposures based on effluent characteristics of northern mining effluents. Ammonia is known to be an important toxicant in aquatic environments. Although ammonia toxicity has been well studied in many fish species, effects of chronic exposure of slimy sculpin, a critical biomonitoring species for northern aquatic habitats, are not well known. Slimy sculpin were exposed to six concentrations of un-ionized ammonia relevant to concentrations found in northern mining effluents: control (0 ppm), 0.278 ppm, 0.556 ppm, 0.834 ppm, 1.112 ppm, and 1.668 ppm. An LC50 of 1.529 ppm was calculated from mortality data. Histopathological examination of gills indicated significant tissue damage, measured as lamellar fusion and epithelial lifting, at 0.834, 1.112, and 1.668 ppm. Using gill endpoints, NOEC and LOEC were calculated as 0.556 ppm and 0.834 ppm respectively. An EC50 of 0.775 ppm was determined for lamellar fusion and an EC50 of 0.842 ppm for epithelial lifting. Hemorrhage of gills was present in mortalities which occurred at 1.668 ppm of un-ionized ammonia. A significant decrease in liver somatic index (LSI) was seen in both male and female fish at 0.834 and 1.112 ppm, respectively. Gonadosomatic index (GSI) in female fish significantly increased at 1.668 ppm un-ionized ammonia with an associated significant increase in total whole body testosterone concentrations. GSI in male fish also significantly increased at 1.668 ppm but no differences were seen in testosterone concentrations. No significant differences were seen in gonad histopathological assessments or condition factor. Results from this study indicate that ammonia concentrations commonly reported in northern mine effluents hold potential to affect the health of slimy sculpin including acute, chronic, histological and endocrine endpoints. <p> Results from both the field study and laboratory exposures provide direction for future monitoring programs in pristine northern rivers and emphasize the importance of monitoring tools to detect change in these ecosystems. I recommend that monitoring of northern pristine rivers focus on a multi-trophic monitoring approach including indicators in algal and benthic macroinvertebrate communities due to their responsiveness. Laboratory exposures using slimy sculpin should be considered to obtain toxicological information for northern contaminants of concern. Gill histopathology endpoints may be a more sensitive indicator for detecting effects in slimy sculpin exposed to ammonia than traditional chronic endpoints. I also recommend monitoring of metal burdens in periphyton and benthic invertebrates for assessment of exposure to mine effluent and causal association in areas of low fish abundance.

Thesis (Ph. D.)--West Virginia University, 2010. / Title from document title page. Document formatted into pages; contains xii, 492 p. : ill. (some col.), maps. Includes abstract. Includes bibliographical references.

A curvilinear regression model was used to determine an expected stomach capacity for any size Bear Lake sculpin with a standard length between 4-9.5 centimeters. Stomach contents were then expressed as a percent fullness and the change in percent fullness with time intervals was used to compute an instantaneous digestion rate. The instantaneous consumption rate was computed by the formula C=log P1-log P0 +d, where C=instantaneous consumption rate. The amount of food consumed during a time interval was computed from the formula It=CtSt, where It=amount of food ingested during a time interval expressed in percent fullness of stomach. The 24 hour consumption rate was computed by summing the consumption rates for 4 consecutive time intervals of 6 hours each. Studies in September, December, and May give instantaneous digestion rates of -.424, -.214, and -.235 and total food consumption rates of 22.2, 10.2, and 6.1 percent of stomach capacity for each individual fish in the population.

Bear Lake sculpin (Cottus extensus) exhibited an ontogenetic habitat shift during their first year of life. Soon after hatching in the littoral zone, the fry swam to the surface where they dispersed throughout the lake. Most juveniles that initially settled in the profundal zone returned to the littoral zone during their first summer. Patterns in the daily growth increments of otoliths confirmed the history of habitat residence and the individual size at the habitat switch. We used this habitat shift to test a μ/g model incorporating a growth rate-mortality risk trade-off. A trade-off occurred in the littoral zone because both growth rate and mortality risk were greater in this habitat. Given initial profundal residence, the directed movement of juveniles to the more profitable littoral zone was consistent with model predictions. Contrary to model predictions, juvenile sculpin initially occupied both habitats and switched habitats at a wide range of sizes. lack of a discrete switch size may have resulted, in part, from the lack of a strong trade-off or from an inability of fish to respond facultatively to environmental variables at the large spatial scale of this system.

Underyearling Bear Lake sculpin exhibit a diel pattern of vertical migration throughout the pelagic region of Bear Lake (Utah-Idaho) until they are approximately 22 mm standard length. Individuals move from the bottom of the lake (5° C) during the day into the water column (13-16° C) at night. The migration, however, is not related to feeding. Although the dominant copepod in the water column, Epischura nevadensis, do undergo a similar diel vertical migration, stomach analysis of juvenile sculpin captured by trawling shows that they do not feed in the water column. Instead, from July through October, their diet is dominated (70-93%) by benthic copepods and ostracods. Also, gut fullness of sculpin increases through the daylight period and decreases through the night, reaching minimum levels just before the dawn descent. Furthermore, feeding trials conducted in the laboratory show that juvenile sculpin feed most efficiently at light intensities found on the bottom (30-60m) of Bear Lake during the day. Feeding rate coefficients increase markedly from 1013 photons m-2S-1 until peaking at intermediate intensities of 1016 photons m-2S-1 and then decline at higher light levels. Although they do not migrate to feed, the movement into the warmer water appears to increase the sculpin's digestion rate, thereby allowing continued feeding during the day. This supports the hypothesis that diel vertical migration in Bear Lake sculpin is a thermoregulatory strategy that increases growth rate.

To assess potential impacts of effluents from Key Lake and McClean Lake uranium operations on freshwater systems, morphometric (weight, length, condition factor) and biochemical (total body lipids and triglycerides, liver triglycerides, muscle protein, muscle RNA/DNA ratio) measures of growth and bioenergetics were determined in young-of-the-year (YOY) fishes collected in fall and spring. It was predicted that fishes exposed to mining and milling effluents would be in poorer condition relative to fishes from reference sites and that fishes would be depleted in lipids and triglycerides in the spring compared to the previous fall following a northern winter. Various total body lipid and triglyceride measurement methods were initially compared and validated. <p>Lakes receiving effluent at Key Lake (in operation > 20 years) were higher in metals, ions and ammonia compared to exposure sites at McClean Lake (in operation < 10 years). At Key Lake, there were site and season differences in total body lipids and triglycerides in YOY northern pike (<i>Esox lucius</i>) and burbot (Lota lota), with fishes being fattier at exposure sites compared to fishes at the reference site, and fish being fattier in spring relative to fall. A local prey item, spottail shiners (<i>Notropis hudsonius</i>), from an exposure lake were higher in triglycerides compared to shiners from a reference site, suggesting an indirect effect of uranium operation effluent on pike and burbot bioenergetics via food web enrichment. At McClean Lake, there were site and season increases in lipids and triglycerides in burbot from the exposure site, however there were no site differences in any morphometric or biochemical endpoint for northern pike. Slimy sculpin (<i>Cottus cognatus</i>) were the only species with lower triglyceride content in the spring following winter. <p>Overall, biochemical measures of growth (muscle protein, muscle RNA/DNA ratio) did not vary with effluent exposure at either uranium operation. Lipids and triglycerides were useful biochemical endpoints that frequently detected site and season differences in fish condition that were not noted with morphometric measures. Site and season differences in fish lipids and triglycerides at sites receiving mining and milling effluents revealed an impact of the uranium operations on indigenous YOY fish condition.

To assess potential impacts of effluents from Key Lake and McClean Lake uranium operations on freshwater systems, morphometric (weight, length, condition factor) and biochemical (total body lipids and triglycerides, liver triglycerides, muscle protein, muscle RNA/DNA ratio) measures of growth and bioenergetics were determined in young-of-the-year (YOY) fishes collected in fall and spring. It was predicted that fishes exposed to mining and milling effluents would be in poorer condition relative to fishes from reference sites and that fishes would be depleted in lipids and triglycerides in the spring compared to the previous fall following a northern winter. Various total body lipid and triglyceride measurement methods were initially compared and validated. <p>Lakes receiving effluent at Key Lake (in operation > 20 years) were higher in metals, ions and ammonia compared to exposure sites at McClean Lake (in operation < 10 years). At Key Lake, there were site and season differences in total body lipids and triglycerides in YOY northern pike (<i>Esox lucius</i>) and burbot (Lota lota), with fishes being fattier at exposure sites compared to fishes at the reference site, and fish being fattier in spring relative to fall. A local prey item, spottail shiners (<i>Notropis hudsonius</i>), from an exposure lake were higher in triglycerides compared to shiners from a reference site, suggesting an indirect effect of uranium operation effluent on pike and burbot bioenergetics via food web enrichment. At McClean Lake, there were site and season increases in lipids and triglycerides in burbot from the exposure site, however there were no site differences in any morphometric or biochemical endpoint for northern pike. Slimy sculpin (<i>Cottus cognatus</i>) were the only species with lower triglyceride content in the spring following winter. <p>Overall, biochemical measures of growth (muscle protein, muscle RNA/DNA ratio) did not vary with effluent exposure at either uranium operation. Lipids and triglycerides were useful biochemical endpoints that frequently detected site and season differences in fish condition that were not noted with morphometric measures. Site and season differences in fish lipids and triglycerides at sites receiving mining and milling effluents revealed an impact of the uranium operations on indigenous YOY fish condition.

Swimming performance strongly influences fitness in aquatic organisms and is closely tied to external body morphology. Although this connection has been closely examined at the individual and species level, few studies have focused on this relationship as it pertains to functional group assemblages. Using functional groups based on similarities in habitat use and morphology, I tested the hypothesis that swimming performance can be reliably predicted by functional group composition. I measured swimming performance as burst speed using a simulated predator attack and as prolonged speed using a step-endurance test in a laboratory flume. I measured morphology using geometric morphometric techniques. A difference in swimming behavior in four of the seven species was observed in the step-endurance test. Benthic species exhibited bracing behavior as an alternative to body-caudal fin (BCF) propulsion in the prolonged speed trials. Swimming performance exhibited a weak relationship with functional groups based on habitat or morphology. Rather a species-based model was the best predictor of swimming performance. Although species exhibited variation in swimming performance, body size was the strongest predictor of absolute swimming performance across all models. Relative swimming performance (measured in body lengths/sec) was negatively related to body size. The results of this study suggest that functional groups are not always reliable predictors of performance and they necessitate empirical testing to validate their effectiveness. This study also provides critical swimming performance data for previously unstudied Great Basin fishes which could be valuable for predicting fish passage through culverts, weirs and fish ladders.