The small-scale vertical migration patterns and spatiotemporal variations of copepods in the Tapong Bay, southwestern Taiwan, from 2003 to 2005 were studied. The differences in species composition and abundance of copepods before and after the removal of oyster culture racks in relation to tides, hydrography and other environmental factors were also compared and herein discussed. Tapong Bay has distinct dry (October to April) and wet (June to August) seasons and exhibits apparent inter-annual variation, cold, saline and low Chl a concentration in dry season, and vice versa in wet season. Most copepod species displayed normal diel vertical migration, descending to the deeper water during daytime and ascending to near surface water at night. Copepods were always more abundant at night than during daytime. Higher abundance but smaller species number of copepods were found during ebb than flood tides. In all, 123 copepod species belonging to 18 families and 31 genera were identified. Oithona oculata, Parvocalanus crassirostris, Acartia sinjiensis, Acartia sp., Bestiolina amoyensis and copepod nauplius were predominant and together they composed 74% of the total number of copepods. These dominant species showed apparent seasonal changes, with higher abundance in autumn and winter. Copepod assemblage also showed apparent difference between stations. Warm-saline-coastal species dominated in the outer region, while small-size taxa and common species of estuaries and aquaculture ponds dominated in the inner bay. Results of indicator species analysis could possibly recognize the area affected by tides and water masses, and identified Acrocalanus gracilis to be the indicator species of flood tide and outer region of the bay, and Acartia sinjiensis the indicator species of ebb tide and inner bay. Our results showed that after the removal of oyster culture racks the species number and abundance of copepods were higher but the seasonal and spatial differences in abundance became smaller. Furthermore, the increase in abundance of zooplankton and copepods in the Bay after the removal of oyster culture racks might be due to the absence of oyster population which exerts great filter¡Vfeeding impact on phytoplankton, and decrease of predation pressure from moon-jelly that usually aggregated in the inner Bay and settled down their polyps on the oyster racks but disappeared after the removal.

Plankton are generally considered good indicators for ocean climate variability, but plankton data from the Arctic are still comparatively scarce. Due to this scarcity of information, the prevalence of vertical migration behaviour at high latitude is still debated. Atlantic inflow is a key process governing biological diversity in the Arctic Ocean, and the location of the Svalbard archipelago makes it an ideal study area to monitor this inflow. Comparing the zooplankton community within the fjords of Svalbard at various latitudes allowed us to assess the influence of Atlantic inflow and any subsequent changes in zooplankton composition that may have implications for higher trophic levels. Using sediment traps deployed on oceanic moorings, Chapter 3 of this thesis analysed long term observations from sea-ice dominated Rijpfjorden for the first time, and compared the zooplankton to Atlantic Water influenced Kongsfjorden. Chapters 4 and 5 investigated the spatial relevance of our moored observations using shipboard observations, and chapters 6 and 7 present observations of vertical migration across a range of conditions. Kongsfjorden was dominated by Calanus copepods associated with Arctic and Atlantic water, and strongly influenced by Atlantic Water advection. Rijpfjorden was largely influenced by sea-ice formation with higher proportional abundances of macrozooplankton species. Advection brought Atlantic associated species into Rijpfjorden during warmer years. Prevailing hydrology and bathymetry were highlighted as factors forcing zooplankton distribution, while advection was identified as responsible for much of the observed small scale spatial variation amongst weaker swimmers. At an aggregation scale of 0.5 nautical miles, zooplankton distribution was highly patchy and moored observations could only be reliably expanded outwards to a maximum of 1 nautical mile. Low amplitude diel vertical migration (especially by younger copepodids) was identified in surface waters when a food source was available. These observations must be considered within the dynamic framework of advection highlighted by this thesis.

The diel vertical migration (DVM) and feeding periodicity of myctophids (lanternfishes) were studied in the high-latitude Masfjorden, Norway, and the tropical Red Sea. In Masfjorden, a bottom-mounted echo sounder permitted continuous studies throughout the year, and revealed a diverse seasonal DVM behavior. During spring and summer, when zooplankton peaks in the epipelagic zone, migrating glacier lanternfish performed normal DVM (NDVM), ascending to the epipelagic zone during night and residing below ~200m during daytime. During autumn and winter, when Calanus overwinters between ~150–300 m, migrating glacier lanternfish mainly performed inverse DVM (IDVM), ascending to feed on Calanus in mid-waters during daytime. Non migrating (NoDVM) individuals were present all year below ~300 m in Masfjorden. In the Red Sea, where zooplankton has an epipelagic distribution, the whole population of skinnycheek lanternfish performed NDVM, feeding in the epipelagic zone at night, while residing at ~500–750 m during daytime. The warm waters of the Red Sea were hypothesized to limit the time individuals can stay in the mesopelagic zone without migrating to feed in the epipelagic layers. The DVM behavior of myctophids largely seemed to relate to the distribution of zooplankton, and it was hypothesized that NDVM will prevail with epipelagic distribution of prey, while IDVM and NoDVM are common in areas where zooplankton migrate seasonally to mesopelagic depths. Potential predators were continuously present, found to apparently attack glacier lanternfish, at mesopelagic depth in Masfjorden. Thus, myctophids are under threat of predation even at mesopelagic depth.

A hull-mounted 38-kHz phased-array acoustic Doppler current profiler (ADCP) was used to acoustically survey the continental margin of the northern Gulf of Mexico (GOM) during 6 cruises in 2002-2003. This is the first backscatter survey with a 38-kHz ADCP in the Gulf of Mexico. ADCPs have been used as a proxy to measure the volume backscatter return from plankton in the water column, however previous studies were restricted to the upper 200 to 300 meters due to the relatively high frequency of operation (150-300 kHz) of the transducers. In addition to measuring deep water current velocities, the 38-kHz phased-array ADCP can measure Relative Acoustic Backscatter Intensity (RABI) as deep as 1000 meters. The daytime depth of the main deep scattering layer at 400 to 500 meters was resolved, and locally high backscatter intensity can be seen down to 800 meters. The objectives were to determine how to analyze RABI from the instrument to resolve scattering layers, and then to seek secondary deep scattering layers of potential prey species below the main deep scattering layer, from 600 to 800 meters in the feeding range for Gulf of Mexico sperm whales. Based on RABI from the 38-kHz ADCP, secondary DSLs in sperm whale diving range were more commonly recorded over the continental shelf than in the deep basin region of the Gulf of Mexico. The daytime depths of migrating plankton showed variation depending on physical circulation features (cyclone, anticyclone, proximity to Mississippi river, and Loop Current) present. Vertical migrations compared between concurrently running 38 and 153-kHz ADCPs showed an overlap of acoustic scatterers recorded by the two instruments, however the 153-kHz instrument has much finer vertical resolution. Vertical migration rates were calculated and simultaneous net tow samples from one of the cruises was used to compare abundance estimates by the two methods.

Diel vertical migrations (DVM) comprise the largest animal migration on the planet and are a phenomenon present in all bodies of water on Earth. A strong sound scattering layer undergoing DVM was observed in the Straits of Florida via a bottom-mounted Acoustic Doppler current profiler (ADCP) Workhorse Longranger 75 kHz (Teledyne RD Instruments) located at the 244 m isobath. ADCP average backscatter showed a clear periodicity corresponding with sunrise and sunset times indicating the presence of a nocturnal DVM. Analysis of the ADCP backscatter data indicated zooplankton swimming velocities were faster during sunrise than sunset times. In several cases the zooplankton swimming velocity appeared to be faster at the beginning of the descent, after which the swimming velocity decreased. Analysis of ADCP velocity data indicated a measureable decrease in the northward component of the current velocity field during migrations (sunrise and sunset) compared to three hours prior. This was presumably associated with an increase in drag due to turbulent friction associated with DVM. A non-hydrostatic computational fluid dynamics (CFD) model with injection of Lagrangian particles was utilized to simulate the effects of DVM on the velocity field and turbulence signature of the Florida Current. A domain simulating a section of the Florida Current was created and zooplankton were represented by particle injection with a discrete phase model. The model was run with and without particles, holding all other parameters the same, for comparison. Idealized temperature stratification and velocity profiles were set for both summer and winter conditions to observe seasonal differences. For each case, velocity and turbulence with particles were compared to results without particles to confirm the changes in profiles were due to the zooplankton (Lagrangian particles). In several cases there was an observable change in average x-velocity profiles due to the injection of particles into the domain. In all cases there was an observable increase in subgrid turbulent viscosity in the wake of the injected particles. This effect was much stronger in the winter case, most likely due to stratification of the water column which gave a near critical Richardson number. These results indicated that DVM does in fact have an effect on the velocity profile and turbulence signature in a strong current under certain conditions and that there was a seasonal difference due to stratification profiles.

The nighttime distribution of vertically migrating mesopelagic fish in relation to nocturnal light was studied during a circumglobal survey, in the Red Sea, and in a fjord at high latitude. The study was based on data derived from ship borne echo sounders (circumglobal and the Red Sea) as well as using upward looking echo sounders mounted on the bottom (Masfjorden, Norway). We also applied a numerical model for analyzing diel vertical migration patterns. The effect of the lunar cycle was the focus in studies at low latitudes, while seasonal changes in nocturnal light climate was in focus at high latitude. Lunar phase significantly affected the distribution of mesopelagic fish at the global scale and in the Red Sea. During nights near full moon, scattering layers of mesopelagic fish distributed deeper than during darker phases of the moon. At high latitude, mesopelagic fish switched its behavior along with seasonal changes in nocturnal lights. In autumn, the population of the studied fish (Maurolicus mueleri) formed separated layers. Juveniles performed normal diel vertical migration followed by midnight sinking, with midnight sinking mainly related to temperature minima and also for avoiding predators. Meanwhile the adults did not migrate vertically, reducing foraging but increasing the adult survival. From late winter to mid-Spring, interrupted ascents behavior was noted in the afternoon. Predator avoidance, satiation, and finding temperature optimum might be the reason behind interrupted ascents. At lighter nights in mid-summer, M. muelleri took on schooling behavior, likely as an anti-predator behavior permitting access to the upper waters in the absence of darkness.

Underyearling Bear Lake sculpin exhibit a diel pattern of vertical migration throughout the pelagic region of Bear Lake (Utah-Idaho) until they are approximately 22 mm standard length. Individuals move from the bottom of the lake (5° C) during the day into the water column (13-16° C) at night. The migration, however, is not related to feeding. Although the dominant copepod in the water column, Epischura nevadensis, do undergo a similar diel vertical migration, stomach analysis of juvenile sculpin captured by trawling shows that they do not feed in the water column. Instead, from July through October, their diet is dominated (70-93%) by benthic copepods and ostracods. Also, gut fullness of sculpin increases through the daylight period and decreases through the night, reaching minimum levels just before the dawn descent. Furthermore, feeding trials conducted in the laboratory show that juvenile sculpin feed most efficiently at light intensities found on the bottom (30-60m) of Bear Lake during the day. Feeding rate coefficients increase markedly from 1013 photons m-2S-1 until peaking at intermediate intensities of 1016 photons m-2S-1 and then decline at higher light levels. Although they do not migrate to feed, the movement into the warmer water appears to increase the sculpin's digestion rate, thereby allowing continued feeding during the day. This supports the hypothesis that diel vertical migration in Bear Lake sculpin is a thermoregulatory strategy that increases growth rate.

No description available.

Predicting the impacts of non-native species remains one of the greatest challenges to invasion ecologists. Because of their insularity, freshwater systems are particularly vulnerable to invasions, especially from non-native predators. The research in this thesis explores the role of abiotic and biotic factors in mediating the distribution and impact of Bythotrephes longimanus, a predatory cladoceran that has been introduced to freshwater systems in North America. Although the general impacts of this invasion have been documented, little is known about the factors that modulate them. Using a combination of field surveys and experiments, I tested several hypotheses concerning the influence of interactions with native species, as well as the role of heterogeneity in the light environment, in mediating the impact of Bythotrephes. Results demonstrated that biotic resistance by native macroinvertebrate predators does not play a limiting role in the establishment success of Bythotrephes. However, the within-lake distribution of Bythotrephes was influenced by these macroinvertebrates, suggesting that the native predator context matters when trying to understand the impacts of non-native predators. This was demonstrated with a mesocosm experiment in which the impact of Bythotrephes was constrained by the native Chaoborus larvae. In terms of the abiotic environment, in situ feeding experiments demonstrated that refuges from impact could exist for some prey taxa, as the outcome of predation by Bythotrephes was dependent on light availability and some prey taxa were more successful at evading predation under low light conditions. Finally, results show that adaptive behaviour by prey is also an important determinant of impact, as migrating Daphnia can escape predation effects by Bythotrephes. The combination of light-limited predation and a shallow distribution by Bythotrephes selects for prey that occupy relatively deeper positions during the day. As a whole, this research highlights the importance of complex interactions in mediating the impact of Bythotrephes and may help to explain some of the variation that has been documented among invaded lakes. A better understanding of these complex interactions can improve our ability to anticipate impacts as Bythotrephes continues to spread, as well as provide insight on some of the long-term effects following invasion. / Thesis (Ph.D, Biology) -- Queen's University, 2013-06-17 09:26:35.221

The main theme of this thesis is the interactions of animals with the environment and each other. The thesis was written within the framework of a biomanipulation project “Pikeperch in Himmerfjärden”. With the aim to investigate possible trophic pit-falls, give the manipulation the best possible start, and find ways to monitor the progression of the manipulation. In Paper I the diet of the invader cladoceran Cercopagis pengoi is analysed with stable isotopes; conducted prior to stocking. C.pengoi has a preference for large copepods, indicating possible competition with fish. Paper II investigates the behavioural differences between pikeperch fingerlings reared in different environments (pond vs. tank). Results suggest that fish reared in semi-natural ponds are more likely to survive directly after stocking. In Paper III and IV, the diel vertical migrations (DVM) of copepods are in focus. In Paper III the migrations of two copepod species: Acartia spp. and Eurytemora affinis are studied over season and life stage. The amplitude of migration was found to increase with ontogeny for both species, indicating evasion of visual predators. Paper IV examines the varying migratory patterns of adult female E. affinis finding that these animals migrate more actively when feeding conditions deteriorate and growth decreases. The overall conclusions of the thesis are that behavioural, not only direct trophic interactions are key when studying ecosystems. / <p>At the time of the doctoraldefense, the following papers were unpublished and had a status asfollows: Paper2: In press. Paper 4: Manuscript.</p>