During mitosis, accurate chromosome segregation is essential: gain or loss of genetic information can be detrimental to cell viability, or promote tumourigenesis. The mitotic checkpoint (also known as the spindle assembly checkpoint or SAC) ensures accurate chromosome segregation by delaying cell cycle progression until accuracy can be guaranteed. Mps1 is a protein kinase that is crucial for mitotic checkpoint signalling and also for proper chromosome alignment at metaphase. However, the precise role of Mps1’s catalytic activity is still unclear. Here, I present AZ3146, a novel small molecule inhibitor of Mps1. AZ3146 inhibits recombinant Mps1 in vitro with an IC50 of ~35 nM, and has low activity against a panel of 50 kinases, suggesting a reasonable degree of selectivity. As predicted for an Mps1 inhibitor, AZ1346 treatment led to spindle checkpoint malfunction in cells, accelerated mitotic timing, and perturbed the kinetochore localisation of the checkpoint effector Mad2. AZ3146 has a negative effect on cell viability, suggesting it leads to detrimental missegregations. Thus, the cellular effects of AZ3146 are consistent with Mps1 inhibition, and I was able to use the compound confidently as a tool to further probe the role of Mps1 activity in cells.Strikingly, levels of Mps1 increased at unattached kinetochores following inhibition of its kinase activity, suggesting Mps1’s kinetochore localisation is regulated by its own activity. A kinase-dead GFP-Mps1 fusion protein only accumulated at kinetochores in the absence of endogenous, active Mps1, implicating intra-molecular interactions in regulation of Mps1’s kinetochore localisation. I confirm a role for Mps1 in the mechanism of chromosome alignment, but in contrast to previous reports I did not detect a decrease in Aurora B activity following Mps1 inhibition. On the contrary, both Mps1’s phosphorylation status and its kinetochore localisation were affected by treatment with the Aurora B inhibitor ZM447439, placing Mps1 downstream of Aurora B. As an alternative explanation for the alignment defect in cells with reduced Mps1 activity, I found that levels of the plus-end directed kinesin Cenp-E were markedly decreased at unaligned kinetochores. I propose a model in which catalytically active Mps1’s auto-release from kinetochores simultaneously promotes both mitotic checkpoint signalling and chromosome alignment by facilitating Mad2 dimerisation and Cenp-E binding at unattached kinetochores.

La mitose permet la multiplication des cellules, contribuant ainsi à générer de nouveaux organismes unicellulaires, ou à construire des organismes multicellulaires. Pendant la mitose, le génome répliqué de la cellule mère est réparti entre les deux cellules filles. Les erreurs survenant lors de la répartition peuvent mener à l’aneuploïdie, une caractéristique de certaines maladies développementales dont les cancers. La fidélité de la répartition des chromatides sœurs dépend du fuseau mitotique, un réseau bipolaire de microtubules qui dirigent les chromosomes via leurs interactions avec les kinétochores assembles sur les chromatides sœurs. Ces interactions mènent à l’alignement des chromosomes, et à leur biorientation. Les chromatides sœurs sont alors attachés à des microtubules .manant des pôles opposés du fuseau. La ségrégation des chromatides sœurs a alors lieu en anaphase, et simultanément le fuseau central est assemblé entre les deux jeux de chromosomes. Cette structure composée de microtubules contribue à la ségrégation des chromatides sœurs en spécifiant la localisation et en favorisant l’ingression du sillon de division cellulaire. Pendant ma thèse, j’ai étudié les fonctions d’un ensemble de protéines du kinétochore, BUB-1, HCP-1/2CENP-F et CLS-2CLASP, lors de la mitose dans les zygotes de C. elegans. En combinant des approches de génétique et de vidéo-microscopie, j’ai montré que ces protéines participent à l’alignement et à la ségrégation des chromosomes. En particulier, BUB-1 contribue à l’alignement des chromosomes en accélérant l’attachement des microtubules aux kinétochores, tout en contrôlant la conformation et la maturation de ces attachements. Ces activités dépendent du recrutement de HCP-1/2 et CLS-2 par BUB-1, mais aussi du complexe RZZ et de la dynéine, ainsi que d’une activité de BUB-1 inhibant le recrutement du complexe SKA aux kinétochores. De plus, j’ai montré que BUB-1, HCP-1/2 and CLS-2 contribuent à l’assemblage des microtubules du fuseau central via l’activité polymérase de CLS-2. Cette fonction dépend du pré-recrutement de ces protéines aux kinétochores en métaphase, en aval de KNL-1, révélant une nouvelle fonction pour les kinétochores dans l’assemblage du fuseau central. Ce travail identifie donc des fonctions versatiles pour ces protéines, les plaçant comme des gardiennes majeures de l’intégrité génétique / Mitosis is a process by which cells multiply, contributing to the generation of new unicellular organisms, or the construction of multicellular organisms. During mitosis, the daughter cells inherit an identical copy of the mother cell’s replicated genome. Errors in genetic material distribution can lead to aneuploidy, a hallmark of developmental diseases including cancer. The accurate segregation of sister chromatids relies on the mitotic spindle, a bipolar network of microtubules that governs chromosome movements by interacting with the kinetochores assembled on sister chromatids. This drives chromosome alignment at the spindle equator, and chromosome bi-orientation meaning that sister kinetochores are connected to opposite spindle poles, laying the ground for sister chromatid segregation during anaphase. Once segregation has initiated, the microtubule-based central spindle is assembled between the two sets of chromosomes. This structure contributes to sister chromatid segregation, by specifying the location and favoring the ingression of the cytokinesis furrow. During my thesis, I have studied the functions of a subset of conserved kinetochore proteins called BUB-1, HCP-1/2CENP-F and CLS-2CLASP, during mitosis in C. elegans zygotes. By combining genetics and live imaging, I have shown that these proteins are involved both in chromosome alignment and segregation. In particular, I have shown that BUB-1 contributes to chromosome alignment by accelerating the establishment of end-on kinetochore-microtubule attachments, while controlling the conformation and maturation of these attachments. These activities rely on BUB-1’s downstream partners HCP-1/2CENP-F and CLS-2CLASP, but also on the RZZ complex and dynein, as well as an activity for BUB-1 in inhibiting the recruitment of the SKA complex. Additionally, I have shown that BUB-1, HCP-1/2CENP-F and CLS-2CLASP contribute to central spindle microtubule assembly, via CLS-2CLASP’s polymerase activity. This function relies on the prior kinetochore recruitment of these proteins during metaphase by the kinetochore scaffold protein KNL-1, revealing a new function for the kinetochore in central spindle assembly. Together, this work identifies versatile functions for this subset of conserved kinetochore proteins, making them major safe-keepers of genomic integrity

The MAP kinase pathway is well known for its key roles in regulating cell proliferation and cell cycle progression. MAP kinases have also been implicated in mitotic functions, however these functions are less-well understood. Recent studies from our laboratory used Xenopus egg extracts to identify B-Raf as an essential activator of the MAPK cascade during mitosis. Therefore, the first objective of my dissertation research was to determine if B-Raf has functional significance during mitosis in human somatic cells. Using RNA interference against B-Raf and various immunofluorescence techniques, I show that B-Raf: (1) localizes to and is phosphorylated at a key mitotic structure, (2) is critical for proper mitotic spindle assembly and chromatin congression, (3) is important for the engagement of microtubules with kinetochores during mitosis, and (4) is necessary for activation of the spindle assembly checkpoint. It has been demonstrated that B-Raf is a prominent oncogene, constitutively activated in the vast majority of melanomas and other cancers. I hypothesized that oncogenic B-Raf expression perturbs mitosis and causes aneuploidy. First, we show that oncogenic B-Raf expression correlates with mitotic abnormalities in human melanoma cells and that spindle defects are induced when oncogenic B-Raf is ectopically expressed. Further, using FISH and karyotype analysis, I demonstrate that oncogenic B-Raf drives aneuploidy and chromosome instability in primary, immortalized, and tumor cells. In summary, my dissertation studies elucidate novel roles for B-Raf in mammalian mitosis. In addition, my studies show for the first time that oncogenic B-Raf disrupts mitosis causing chromosomal instability. I propose that oncogenic B-Raf-induced chromosome instability contributes to tumorigenesis.

The precise positioning of the mitotic spindle to the cell center during mitosis is a fundamental process for chromosome segregation and the division plane definition. Despite its importance, the mechanism for spindle centering remains elusive. To study this mechanism, the dynamic of the microtubules was characterized at the bulk and at the cortex in the C. elegans embryo. Then, this dynamic was correlated to the centering forces of the spindle that were studied by applying calibrated magnetic forces via super-paramagnetic beads inserted into the cytoplasm of one- and two-cell C. elegans embryos. Finally, these results were confronted with the different centering models: cortical pushing model, cortical pulling model and the cytoplasmic pulling model. This thesis shows that: (i) The microtubules dynamic of the spindle aster is controlled spatially in the C. elegans embryo, with not rescues and catastrophes in the cytoplasm but in the centrosome and the cortex, respectively. (ii) The centering mechanism of the spindle behaved roughly as a damped spring with a spring constant of 18 12 pN/ m and a drag coefficient of 127 65 pN s/ m (mean SD). This viscoelastic behavior is evidence of a centering force that recovers and/or maintains the position of the spindle in the cell center. (iii) It seems to be two mechanisms that recover/maintain the spindle position. A fast one that may work for transient displacements of the spindle and a slow one that work over large and long perturbations. (iv) The centering forces scale with the cell size. The centering forces are higher in the two-cell embryo. This result argues against a centering mechanism mediated by cytoplasmic factors. It seems to be a limit for the relation of centering force to size, as the forces found in the four-cell embryo are comparable to the single-cell ones. (v) The centering forces scale with the amount of microtubules in the cell. This strengthens the belief that the microtubules are the force transmission entities of the centering mechanism. (vi) The boundary conditions are important to maintain the centering forces. A transient residency time of microtubules at the cortex, which is controlled by cortical catastrophe factors, is indispensable for a proper force transmission by the microtubules. (vii) The elimination of cortical catastrophe factors provides evidence for microtubules buckling, which is taken as a proof of polymerization forces. (viii) The cortical pulling forces mediated by the gpr-1/2 pathway do not seem to be involved in centering and it is proposed they are present in the cell for off-center positioning purposes. (ix) The forces generated by vesicle transport are enough to displace the spindle and they are suggested to be auxiliary forces to centering. (x) The forces associated with the spindle change dramatically during cell division. From metaphase to anaphase the forces associated with the spindle scale up to five times. This behavior was consistent during the development of the embryo as the same pattern was observed in the one-, two- and four-cell embryo. (xi) The higher forces found during anaphase are not cortical pulling (via pgr-1/2 pathway) depended, and it is proposed the spindle is `immobilised' by tethering or by an unknown cortical pulling pathway. To this date, this thesis presents the most complete in-vivo measurements of the centering forces in association with the microtubules dynamics. Taken together the results constrain molecular models of centering. This thesis concludes that most probably the predominant forces of the spindle centering mechanism during mitosis are generated by astral microtubules pushing against the cortex. Additionally, this thesis presents the most complete map of forces during cell division during development, which will prove to be indispensable to understand the changes the spindle undergoes when it changes its function.

Indiana University-Purdue University Indianapolis (IUPUI) / Fanconi Anemia (FA), a chromosomal instability syndrome, is characterized by bone marrow failure, genetic malformations, and predisposition to malignancies like acute myeloid leukemia (AML) and solid tumors. FA is caused by germline bi-allelic mutations in one of 21 known FA pathway genes and somatic mutations in FA genes are also found in a variety of sporadic cancers. Recently, numerous reports have discovered that the protective function of the FA pathway extends beyond its canonical role in regulation of DNA repair in interphase. In particular, the FA pathway has been shown to function in essential mitotic processes including spindle assembly checkpoint (SAC), cytokinesis, and centrosome maintenance. Understanding of the mechanistic origins of genomic instability leading to carcinogenesis and bone marrow failure has important scientific and clinical implications. To this end, using a micronucleus assay, we showed that both interphase DNA damage and mitotic errors contribute to genomic instability in FA ex vivo and in vivo. Functional studies of primary FA patient cells coupled with super-resolution microscopy revealed that FANCA is important for centrosome dependent spindle assembly supporting the protective role of FA pathway in mitotic processes. Furthermore, we dissected the interactions between the FA pathway and cellular kinase networks by employing a synthetic lethality sh-RNA screen targeting all human kinases. We mapped kinases that were synthetically lethal upon loss of FANCA, particularly those involved in highly conserved signal transduction pathways governing proliferation and cell cycle homeostasis. We mechanistically show that loss of FANCA, the most abundant FA subtype, results in in premature degradation of the mitotic kinase BUBR1 and faster mitotic exit. We further demonstrate that FANCA is important for PCAF-dependent acetylation of BUBR1 to prevent its premature degradation. Our results deepen our understanding of the molecular functions of the FA pathway in mitosis and uncover a mechanistic connection between FANCA and SAC phosphosignaling networks. These findings support the notion that further weakening the SAC through targeting kinases like BUBR1 in FA-deficient cancers may prove to be a rational therapeutic strategy.

No description available.

No description available.

In LLC-Pk1 cells, and most cultured mammalian cells, cell division is highly regulated to achieve equal sized daughter cells. During this process, duplicated centrosomes separate and establish a bipolar array called the mitotic spindle. The mitotic spindle is responsible for aligning the chromosomes at the metaphase plate, and separating sister chromatids during anaphase. Spindle positioning and elongation are thought to be driven by the interaction between dynamic astral microtubules and cortical dynein. Extensive research has revealed that dynein is anchored to the cortex via the highly conserved NuMA/LGN/Gαi ternary complex in metaphase and the additional PIP/PIP2/NuMA, or 4.1G/R/NuMA, pathways during anaphase. Although substantial research has been conducted on the proteins involved with this process, it is unclear exactly how a cell is able to generate forces for spindle positioning and elongation. Here, I use photoactivation and FRAP techniques to investigate the role of the midzone during spindle elongation, and how cortical dynein is able to drive this process. I provide evidence that microtubule sliding in the midzone is not precisely coordinated with pole separation, however the two actions are interdependent. In addition, I demonstrate that cortical dynein dynamics are significantly enhanced during anaphase, most likely due to an increased length and stability of astral microtubules. I hypothesize that this increased turnover rate allows for rapid redistribution of dynein throughout the cortex to ensure proper spindle elongation.

Contact inhibition of locomotion (CIL), a migratory mechanism, first introduced by Abercrombie and Heaysman in 1953 is now a fundamental driving force in developmental, repair and disease biology. Much of what we know of CIL stems from studies done on 2D substrates which are unable to provide the essential biophysical cue of fibrous extracellular matrix curvature. Here we inquired if the same rules are applicable for cells attached to and migrating persistently on suspended and aligned ECM-mimicking nanofibers. Using two elongated cell shapes (spindle attached to one fiber, and parallel attached to two fibers), we quantitate CIL rules for spindle-spindle, parallel-parallel and spindle-parallel collisions. Two approaching spindles do not repolarize upon contact but rather continue to migrate past one another. Contrastingly, approaching parallel cells establish distinct CIL, with only one cell repolarizing upon contact followed by migration of both cells as a cohesive unit in the repolarization direction. Interestingly, for the case of spindle and parallel cell collision, we find the parallel cell to shift the morphology to that of spindle and continue persistent movement without repolarization. To account for effect of cell speed, we also quantitate CIL collisions between daughter and non-dividing cells. While spindle-spindle collisions result in cells still walking by, for parallel-parallel collisions, we capture rare events of a daughter cell pushing the non-dividing cell. With increasing population numbers, we observe formation of cell streams that collapse into spheroids. Single cells are able to invade along fibers from the spheroids and are then subject to same CIL conditions, thus providing a platform with cyclic CIL. The presented coupling of experimental and analytical framework provides new insights in contextually relevant CIL and predictive capabilities in cell migration decision steps. / Master of Science / Contact inhibition of locomotion (CIL) is a migratory process that can lead to a change in migration direction through protrusion inhibition of single cells. First described in 1953, the traditional model of CIL shows that on a 2D substrate, two migrating cells experience a decrease in protrusive behavior upon contacting each other, followed by repolarization, and migration away from one another. However, a cell's extracellular matrix (ECM) is fibrous in nature, and how cells maintain standard CIL rules in fibrous environments remains unclear. Here, using suspended, aligned nanofibers created using a non-electrospinning Spinneret based Tunable Engineered Parameters (STEP) method, we investigate CIL decision steps of two fibroblast cells approaching each other in two shapes: spindle cells attached to single fibers, and parallel cells attached to two fibers. Most spindle cells approaching each other do not switch direction upon contact, but rather continue to migrate past each other, termed a walk past. Contrastingly, approaching parallel cells display unique CIL whereby only one cell repolarizes and reverses its migration direction. Subsequently, both cells remain in contact while migrating in the repolarization direction. Interestingly, we report that both spindle and parallel CIL are also affected by speed post cell division. Altogether, for the first time, we introduce a platform to understand cell shape driven CIL geometrical rules in ECM mimicking environments.

Over the course of a typical night, sleep is comprised of multiple different stages that involve changes in brainwave patterns. Intracranial EEG (iEEG) is an invasive brain recording technique used in hospital settings in epileptic patients to determine the focus of their seizure activity. The intracranial data recorded allows one to directly observe the neural activity of deep brain structures such as the hippocampus and to detect single unit activity and local field potentials, thus providing a level of physiological detail normally available only in animal studies. In this thesis we employ intracranial data to advance our understanding of sleep neural dynamics in humans, and to this end its focus is in two areas : (1) developing a way of sleep scoring iEEG data and (2) investigating the neural dynamics of a particular waveform found during sleep, the sleep spindle, and its role in memory consolidation. Typically, iEEG recordings do not include electrooculogram or electromyogram recordings, which are normally needed for sleep scoring—especially for scoring rapid-eye movement (REM) sleep. We identified differences in alpha power between wake and REM sleep to develop a methodological way to reliably differentiate between wake and REM sleep states. We also wanted to investigate the neural dynamics involved with a particular brainwave seen during sleep, the sleep spindle, which is thought to be important for sleep-mediated memory consolidation. Historically, sleep spindles were thought to occur synchronously across the cortex, but recent findings using iEEG have identified that sleep spindles can also be local. We utilized intracranial EEG to confirm previous findings that iEEG can identify local sleep spindles. In addition to identifying local sleep spindles, we aimed to investigate the potential role that sleep spindles have on learning and memory using standard targeted memory reactivation paradigms for iii both procedural and declarative memories. We found that local sleep spindles occurred at a specific time following auditory stimulation for both procedural and declarative memories. This work has opened up the use of iEEG recordings to investigations of REM sleep dynamics and laid the groundwork for examining the role of local sleep spindles in memory consolidation. / Master of Science / During a night of sleep, our brain goes through different stages that exhibit changes in brainwave patterns. Intracranial EEG (iEEG) is an invasive brain recording technique used in hospital settings in epileptic patients to determine the focus of their seizure activity; this particular brain recording technique allows one to observe the brain activity of deep brain structures. By using iEEG data, we aimed to (1) develop a way of sleep scoring iEEG data and (2) investigate the neural dynamics of a particular waveform found during sleep, the sleep spindle, and its role in memory consolidation.  Electrooculograms (EOG) are used to record the electrical activity of eye movements, and electromyograms (EMG) are used to measure muscle activity. Both of these recording techniques, in addition to EEG, are needed for sleep scoring, especially rapid eye movement (REM) sleep. However, typical iEEG recordings do not have EOGs and EMGs applied to the patient. Using iEEG data, we were able to identify differences in a specific brainwave, the alpha rhythm, between wakeful brain activity and REM sleep brain activity. Furthermore, we were able to use this difference to reliably score REM sleep in iEEG data without the need for EOGs and EMGs.  We also wanted to investigate the brainwave changes in a particular waveform, the sleep spindle, that has been thought to be important for sleep-mediated memory consolidation. Previous research using typical EEG recordings showed that sleep spindles occur synchronously across the cortex, but recent findings using iEEG have identified that sleep spindles can also occur asynchronously across the cortex. We replicated previous research showing that these local sleep spindles are identifiable using iEEG recordings. In addition to identifying local sleep spindles, we investigated the potential role that sleep spindles have on learning and memory. To do so, we used standard targeted memory reactivation paradigms for two types of memory: declarative and procedural memory. We found that local sleep spindles occurred at a specific time following auditory stimulation for both procedural and declarative memories.  This work has opened up the use of iEEG recordings to investigations of REM sleep dynamics and laid the groundwork for examining the role of local sleep spindles in memory consolidation.