Early blight (Alternaria solani Sorauer)is a major foliar disease of potatoes in most growing regions of the world and is underestimated in South Africa. This project studies the epidemiology and control of the disease in South Africa. A decision support system (DSS) for early blight in South Africa was developed and evaluated in field trials. This early blight DSS is the first such system to be developed in South Africa and once incorporated with the late blight model, will represent innovative technology for use in the South African potato industry. Trends in weather variables and concentrations of airborne conidia of A. solani were monitored. Distinct seasonal variation was noted. Peaks in spore concentration coincided with periods favourable for spore formation and dispersal; most notable was diurnal periodicity and interrupted wetting periods. The results obtained from these measurements will be useful in improving early blight DSSs for southern Africa. Isolates of A. solani from various potato-growing regions in South Africa were characterized using virulence, vegetative compatibility (VC) and random amplified microsatellite (RAMS) primers. Neither the virulence assays nor VC tests sufficiently characterised the population. Analysis of RAMS profiles revealed 27% genetic diversity among the isolates. This value is similar to diversity values obtained by previous authors studying A. solani, however, it is relatively high for an asexually reproducing fungus. There was no evidence for geographical clustering of isolates, indicating that isolates are widespread across South Africa. A survey on control practices and grower perceptions of early blight in South Africa was conducted using a questionnaire. These questionnaires were distributed to growers from 10 potato-growing regions in South Africa. Results highlighted the most popular control methods and cultivars in the South African potato industry. The majority of respondents indicated that they would use an accurate, cost-effective early blight DSS, and that more research is necessary on early blight in South Africa. A survey on control practices and grower perceptions of early blight in South Africa was conducted using a questionnaire. These questionnaires were distributed to growers from 10 potato-growing regions in South Africa. Results highlighted the most popular control methods and cultivars in the South African potato industry. The majority of respondents indicated that they would use an accurate, cost-effective early blight DSS, and that more research is necessary on early blight in South Africa. Estimated crop losses ranged from 1% - 60%, with an average of approximately 20%. This is the first comprehensive epidemiological study to be conducted on early blight in South Africa and has highlighted the need for further research. / Thesis (DPhil (Plant Pathology))--University of Pretoria, 2006. / Microbiology and Plant Pathology / unrestricted

Spontaneous expulsion of various forms and types of matter from their solid substrates has always been an integral part of interfacial physics problems. A thorough understanding of such interactions between a solid surface and different soft materials not only expands our theoretical knowledge, but also has applications in self-cleaning, omniphobic surfaces and phase-change heat transfer. Although there is a renewed interest in the design of robust functional surfaces which can passively remove highly viscous liquids or dew, or retard ice accretion or frost formation, the physics of several dewetting and/or deicing mechanisms are yet to be fully understood. Even though we know how jumping-droplet condensation offers significantly better heat transfer performance than regular dropwise condensation and can liberate foreign particles, fundamental questions on the effect of surface orientation on jumping-droplet condensation or how it helps in large-scale fungal disease epidemic in plants are still unanswered. Thus, we first try to fill the knowledge gap in jumping-droplet condensation by characterizing their orientation-dependence and their role in a large-scale pathogenic rust disease dissemination among wheat. Unfortunately, understanding of such dewetting mechanisms does not necessarily translates to prevention or removal of ice and frost on subzero surfaces. Use of superhydrophobic structures or hygroscopic materials to retard the growth of frost was found to be limiting. Therefore the search for an efficient, inexpensive, and environmentally favorable anti-icing or de-icing mechanism is still underway. Here we give a framework for making a novel de-icing construct by analyzing a peculiar jumping frost phenomena where frost particles spontaneously jump off the surface when a polar liquid is brought above. Lastly, we demonstrate a simple and cost-effective technique to design a slippery liquid-infused surface from low-density hydrocarbon-based polymers, which is able to effectively remove a wide variety of soft materials. The main all-encompassing theme of this dissertation is to enhance our understanding of several dewetting phenomena, which might enable better design and/or mitigation strategies to control the expulsion of various forms of matter from a wide variety of surfaces. / Doctor of Philosophy / A few years back, a laundry detergent company in India came up with a famous ad campaign; it showed kids coming home from school with dirt all over their clothes to face the wrath of their parents. Rather than casually disparaging their mischievousness, the ad would make us think with their tagline: "Agar daag (Lit. stain, Fig. mess) lagne se kuch achha hota hain, toh daag achhe hain na? (Fig. If something good comes out of a mess, is it a mess?)". While this presents to us an excellent philosophical conundrum, in reality, we always find ways to get rid of foreign materials from surfaces of everyday use. Using water or dirt-repellent coatings on our shoes/clothes/car windshields or in worst case, spending hours trying to clean frost off our cars is something we are all familiar with. Finding innovative ways to remove unwanted materials from surfaces is not limited to humans, but also exhibited by various natural organisms. The excellent water repellency of lotus leaves, antifogging abilities of mosquito eyes or cicada wings, and slipperiness of pitcher plants are just few examples of natural self-cleaning surfaces designed to keep foreign materials or dew droplets off the surface. Sometimes we take a leaf or two out of these natural designs to help our cause. Surfaces with extreme water repellency are called superhydrophobic (hydro: water, phobos: fear). For a long time, gravity was considered to be the only passive droplet removal mechanism on these surfaces. About ten years ago, researchers found out that when two or more small dew droplets come together on these surfaces, they jump off the surface. Compared to the gravity removal, much smaller droplets can be removed via this method resulting in better anti-fogging qualities and heat transfer performance on the surface. As the jumping droplet event itself is independent of gravity, it was long assumed that the performance of these surfaces would not be dependent on their orientation. These jumped droplets can also take off with contaminating particles by partially or fully engulfing them. A recent study has brilliantly showed how rust spores are liberated from the superhydrophobic wheat leaves via jumping dew droplets. This fundamentally new mode of pathogen transport is yet to be fully understood at the same scale as we know wind or rain-induced fungal spore transport. In this work, we try to fill the knowledge gap by answering questions such as whether the surfaces with the abilities of gravity-independent jumping-induced droplet removal ironically fail to gravity and how far can spore(s) travel engulfed in a jumped droplet. But it is not just water droplets (or particles collected by water droplets) on a surface that we want to get rid off. The solid phase of water, i.e., ice or frost, when formed on regular surfaces, is actually harder to remove. The common ice-preventing surfaces are generally unable to stop complete frost formation and forces us to use salt or other moisture attracting chemicals to remove ice from a surface, knowing very well what is the economic and environmental cost of these chemicals. Here, we have introduced a novel de-icing mechanism by holding only a drop of water over a sheet of frost. The simplicity of our experimental setup may remind you the home physics experiments we all did in our childhood. We finish our discussion by designing a slippery surface from regular polymer films used in food packaging. Although the idea behind these slippery surfaces has been around since 2011, polyethylene films have never been used to make such surfaces before. Here, we show through extensive characterization that by choosing a suitable lubricating oil and a polyethylene-based film, we can finally get all of our ketchup to slide out of their packets, without struggle. If the future design of superhydrophobic condensers, de-icing constructs, or slippery surfaces benefit from the work reported here, may be I can finally say with certainty, "Daag Achhe Hain (Dirt is good.)."

<p>Coprophilous ascomycetes are a diverse group of saprobes, of which many belong to three families, Delitschiaceae, Phaeotrichaceae and Sporormiaceae, within the large order Pleosporales. The natural relationships and circumscription of these families are unclear, especially within the family Sporormiaceae, where the generic delimitation have been questioned. There is also a need to understand how different ecological processes affect species richness and occurrence of coprophilous ascomycetes in general. The aim of this thesis was therefore to test earlier classifications of coprophilous taxa within Pleosporales, using phylogenetic analyses of DNA sequences; and to study how the habitat, dung type and herbivores´ food choice may affect the species richness and species composition of coprophilous ascomycetes.</p><p>A phylogenetic study shows that coprophilous taxa have arisen several times within Pleosporales. Sporormiaceae and Delitschiaceae are separate monophyletic groups and should continue to be recognized as two distinct families within Pleosporales. Phaeotrichaceae forms a monophyletic group, and is, unexpectedly, a strongly supported sister-group to Venturiaceae, but if they belong to Pleosporales or not, remains unresolved. Testudinaceae and Zopfiaceae, which previously had an unclear position in Ascomycota, are shown to be members of Pleosporales and should be treated as two separate families. The genus <i>Eremodothis</i> is, however, not related to Testudinaceae, but is nested within Sporormiaceae and should be transferred to <i>Westerdykella</i>.</p><p>The natural relationships within Sporormiaceae are still not fully resolved and consequently, I suggest a rather conservative generic classification, accepting <i>Preussia, Sporormia, Westerdykella</i>, as well as <i>Sporormiella</i>, despite that the latter is not conclusively well supported as monophyletic. Characters previously used in the taxonomy and classification of Sporormiaceae, as choice of substrate, presence or absence of an ostiole, presence or absence of germ slits, and spore ornamentation, were all homoplastic and not very useful for circumscribing monophyletic groups.</p><p>Field-studies of moose (<i>Alces alces</i>), mountain hare (<i>Lepus timidus</i>) and roe deer (<i>Capreolus capreolus</i>) dung resulted in several new species records, which suggests that coprophilous ascomycetes in boreal Sweden are poorly known. Fungal species richness and occurrence on moose dung varied significantly between habitats. Species diversity was negatively associated with amount of insect attack, and insects feeding either on the dung and/or the fungi may be an important factor explaining the observed pattern. Species richness of coprophilous fungi varied also significantly between different dung types. A study of moose, mountain hare, and roe deer dung did not show any consistent patterns in respect to the animals´ digestive system. There was, however, a general strong positive relationship between the total number of ascomycete species and the number of plant species foraged by the three herbivores. Fungal species with large spores (≥ 50 µm) were over-represented on roe deer dung, and under-represented on moose dung, while the reverse was found for species with small spores (<10µm). This suggests that the foraging level of the herbivore, which in turn mirrors species-specific differences in spore dispersal of the fungi, may be an important factor in explaining species richness and diversity of the coprophilous community.</p>

Coprophilous ascomycetes are a diverse group of saprobes, of which many belong to three families, Delitschiaceae, Phaeotrichaceae and Sporormiaceae, within the large order Pleosporales. The natural relationships and circumscription of these families are unclear, especially within the family Sporormiaceae, where the generic delimitation have been questioned. There is also a need to understand how different ecological processes affect species richness and occurrence of coprophilous ascomycetes in general. The aim of this thesis was therefore to test earlier classifications of coprophilous taxa within Pleosporales, using phylogenetic analyses of DNA sequences; and to study how the habitat, dung type and herbivores´ food choice may affect the species richness and species composition of coprophilous ascomycetes. A phylogenetic study shows that coprophilous taxa have arisen several times within Pleosporales. Sporormiaceae and Delitschiaceae are separate monophyletic groups and should continue to be recognized as two distinct families within Pleosporales. Phaeotrichaceae forms a monophyletic group, and is, unexpectedly, a strongly supported sister-group to Venturiaceae, but if they belong to Pleosporales or not, remains unresolved. Testudinaceae and Zopfiaceae, which previously had an unclear position in Ascomycota, are shown to be members of Pleosporales and should be treated as two separate families. The genus Eremodothis is, however, not related to Testudinaceae, but is nested within Sporormiaceae and should be transferred to Westerdykella. The natural relationships within Sporormiaceae are still not fully resolved and consequently, I suggest a rather conservative generic classification, accepting Preussia, Sporormia, Westerdykella, as well as Sporormiella, despite that the latter is not conclusively well supported as monophyletic. Characters previously used in the taxonomy and classification of Sporormiaceae, as choice of substrate, presence or absence of an ostiole, presence or absence of germ slits, and spore ornamentation, were all homoplastic and not very useful for circumscribing monophyletic groups. Field-studies of moose (Alces alces), mountain hare (Lepus timidus) and roe deer (Capreolus capreolus) dung resulted in several new species records, which suggests that coprophilous ascomycetes in boreal Sweden are poorly known. Fungal species richness and occurrence on moose dung varied significantly between habitats. Species diversity was negatively associated with amount of insect attack, and insects feeding either on the dung and/or the fungi may be an important factor explaining the observed pattern. Species richness of coprophilous fungi varied also significantly between different dung types. A study of moose, mountain hare, and roe deer dung did not show any consistent patterns in respect to the animals´ digestive system. There was, however, a general strong positive relationship between the total number of ascomycete species and the number of plant species foraged by the three herbivores. Fungal species with large spores (≥ 50 µm) were over-represented on roe deer dung, and under-represented on moose dung, while the reverse was found for species with small spores (&lt;10µm). This suggests that the foraging level of the herbivore, which in turn mirrors species-specific differences in spore dispersal of the fungi, may be an important factor in explaining species richness and diversity of the coprophilous community.

Dispersal, especially long-distance dispersal, is an important component in many disciplines within biology. Many species are passively dispersed by wind, not least spore-dispersed organisms. In this thesis I investigated the dispersal capacity of bryophytes by studying the colonization patterns from local scales (100 m) to landscape scales (20 km). The dispersal distances were measured from a known source (up to 600 m away) or inferred from a connectivity measure (1–20 km). I introduced acidic clay to measure the colonization rates over one season of a pioneer moss, Discelium nudum (I–III). I also investigated which vascular plants and bryophytes that had colonized limed mires approximately 20–30 years after the first disturbance (IV). Discelium effectively colonized new disturbed substrates over one season. Most spores were deposited up to 50 meters from a source but the relationship between local colonization rates and connectivity increased with distance up to 20 km (I–III). Also calcicolous wetland bryophyte species were good colonizers over similar distances, while vascular plants in the same environment colonized less frequently. Common bryophytes that produce spores frequently were more effective colonizers, while no effect of spore size was detected (IV). A mechanistic model that take into account meteorological parameters to simulate the trajectories for spores of Discelium nudum fitted rather well to the observed colonization pattern, especially if spore release thresholds in wind variation and humidity were accounted for (III). This thesis conclude that bryophytes in open habitats can disperse effectively across landscapes given that the regional spore source is large enough (i.e. are common in the region and produce spores abundantly). For spore-dispersed organisms in open landscapes I suggest that it is often the colonization phase and not the transport that is the main bottle-neck for maintaining populations across landscapes. / <p>At the time of the doctoral defence the following papesr were unpublished and had  a status as follows: Paper 2: Epubl ahead of print; Paper 3: Manuscript; Paper 4: Manuscript</p>

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