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Biological systems are in dynamic interaction. Many responses reside in the core concepts of biological systems interplay (competition and cooperation). In infection situation, the competition between a bacterial system and a host is shaped by many stressors at spatial and temporal determinants. Reactive chemical species are universal stressors against all biological systems since they potentially damage the basic requirements of these systems (nucleic acids, proteins, carbohydrates, and lipids). Either produced endogenously or exogenously, reactive chemical species affect the survival of pathogens including the gram-positive Staphylococcus aureus (S. aureus). Therefore, bacteria developed strategies to overcome the toxicity of reactive species. S. aureus is a widely found opportunistic pathogen. In its niche, S. aureus is in permanent contact with surrounding microbes and host factors. Deciphering the deterministic factors in these interactions could facilitate pinpointing novel bacterial targets. Identifying the aforementioned targets is crucial to develop new strategies not only to kill the pathogenic organisms but also to enhance the normal flora to minimize the pathogenicity and virulence of potential pathogens. Moreover, targeting S. aureus stress response can be used to overcome bacterial resistance against host-derived factors. In this study, I identify a novel S. aureus stress response factor against reactive electrophilic, oxygen, and hypochlorite species to better understand its resilience as a pathogen. Although bacterial stress response is an active research field, gene function is a current bottleneck in characterizing the understudied bacterial strategies to mediate stress conditions. I aimed at understanding the function of a novel protein family integrated in many defense systems of several biological systems. In bacteria, fungi, and plants, old yellow enzymes (OYEs) are widely found. Since the first isolation of the yellow flavoprotein, OYEs are used as biocatalysts for decades to reduce activated C=C bonds in α,β-unsaturated carbonyl compounds. The promiscuity of the enzymatic catalysis is advantageous for industrial applications. However, the physiological function of OYEs, especially in bacteria, is still puzzling. Moreover, the relevance of the OYEs in infection conditions remained enigmatic.   Here, I show that there are two groups of OYEs (OYE flavin oxidoreductase, OfrA and OfrB) that are encoded in staphylococci and some firmicutes. OfrA (SAUSA300_0859) is more conserved than OfrB (SAUSA300_0322) in staphylococci and is a part of the staphylococcal core genome. A reporter system was established to report for ofrA in S. aureus background. The results showed that ofrA is induced under electrophilic, oxidative, and hypochlorite stress. OfrA protects S. aureus against quinone, methylglyoxal, hydrogen peroxide, and hypochlorite stress. Additionally, the results provide evidence that OfrA supports thiol-dependent redox homeostasis. At the host-pathogen interface, OfrA promotes S. aureus fitness in murine macrophage cell line. In whole human blood, OfrA is involved in S. aureus survival indicating a potential clinical relevance to bacteraemia. In addition, ofrA mutation affects the production of the virulence factor staphyloxanthin via the upper mevalonate pathway. In summary, decoding OfrA function and its proposed mechanism of action in S. aureus shed the light on a conserved stress response within multiple organisms. / Biologische Systeme unterliegen ständig dynamischen Interaktionen. Diese werden geprägt von Konkurrenz und Kooperation. Im Falle einer Infektion wird die Konkurrenz zwischen einem bakteriellen Organismus und dem infizierten Wirt von der Einwirkung vieler Stressoren in allen biologischen Nischen geprägt. Eine fundamentale Rolle spielen dabei reaktive chemische Verbindungen die als universale Stressoren alle biologischen Systeme mit ihren fundamentalen Makromolekülen (Nukleinsäuren, Proteine, Kohlenhydrate und Lipide) potenziell schädigen. Reaktive chemische Verbindungen, entweder endogen oder exogen gebildet, beeinträchtigen das Überleben aller Pathogene, auch das Überleben des in dieser Arbeit behandelten gram-positiven Bakteriums Staphylococcus aureus (S. aureus). Um die lebensbedrohende Toxizität der reaktiven Verbindungen zu umgehen, haben Bakterien eine Vielzahl hoch spezialisierter Überlebensstrategien entwickelt. S. aureus ist ein weit verbreiteter opportunistischer Krankheitserreger. Er unterliegt dem permanenten Kontakt mit dem umgebenden Mikrobiom und den verschiedenartigen Wirtsfaktoren. Das Wissen um die Mechanismen der bakteriellen Stressabwehr während einer Pathogen-Wirts-Beziehung könnte als Grundlage für die Identifizierung neuer antibakterieller Zielstrukturen dienen. Eine spezifische Inaktivierung solcher Strukturen könnte dann den pathogenen Organismus schädigen ohne die normale Flora zu schwächen. Ferner können Untersuchungen an der Stressantwort von S. aureus genutzt werden, um die bakterielle Resistenz gegen wirtseigene Faktoren zu schwächen. Im Mittelpung dieser Arbeit steht die Charakterisierungeines neuartigen Faktors in der Stressantwort von S. aureus, der sowohl gegen elektrophilen Stress als auch gegen reaktive Sauerstoff- und Hypochlorit-Verbindungen aktiv ist. Die Ergebnisse der Arbeiten tragen zu einem besseren Verständnis der Stressantwort von dem wichtigen pathogenen Bakterium S. aureus bei. Trotz der Tatsache, dass die Untersuchung bakterieller Stressantworten Gegenstand der aktuellenForschung ist, sind viele Prozesse und die daran beteiligten Faktoren nur unzureichend charakterisiert. Daher war die Zielsetzung dieser Thesisdie Funktion eines Vertreters einer neuen Proteinfamilie, die mglw. in vielen Abwehrsystemen gegen chemische Stressoren eine wichtige Rolle spielt, zu untersuchen. Die von Otto Warburg erstmalig als “old yellow enzymes” (OYEs) bezeichnete Proteinfamilie ist im Bakterien-, Pilz- und Pflanzenreich weit verbreitet. Nach der erstmaligen Isolation des gelben Flavoproteins, werden OYEs seit vielen Jahrzehnten als Biokatalysatoren verwendet, um aktivierte C=C-Doppelbindungen in α,β-ungesättigte Carbonylverbindungen zu reduzieren. Die Promiskuität der enzymatischen Katalyse ist für industrielle Anwendungen sehr vorteilhaft. Nichtsdestotrotz konnte die physiologische Funktion von OYEs besonders in Bakterien bislang nur ansatzweise aufgeklärt werden und die Beteiligung der OYEs unter Infektionsbedingungen ist weiterhin unbekannt. In dieser Arbeit wurden zwei Vertreterder OYEs (OYE flavin oxidoreductase OfrA und OfrB) im Genom von Staphylokokken und Firmicuten identifiziert. OfrA (SAUSA300_0859) ist in Staphylokokken stärker konserviert als OfrB (SAUSA300_0322) und ist Teil des Kerngenoms. Es wurde ein Reportersystem etabliert, um die Expression von ofrA in S. aureus-Stämmen zu untersuchen. Die Daten dieser Arbeit zeigen, dass ofrA unter elektrophilen, oxidativen und hypochloriten Stressbedingungen induziert wird. OfrA schützt S. aureus vor Stress durch Quinone, Methylglyoxal, Wasserstoffperoxid und Hypochlorit. Weiterhin liefern die Ergebnisse Evidenz, dass OfrA die Thiol-abhängige Redox-Homöostase unterstützt. Weiterhin ist OfrA an der Fitness und dem Überleben von S. aureus nach Phagozytose in murinen Makrophagen beteiligt. Das Überleben von S. aureus in humanem Vollblut war ebenfalls sehr stark von der OfrA Expression abhängig. Somit kann auf eine wichtige Rolle von OfrA während des Infektionsgeschehens z.B. bei Bakteriämie geschlossen werden. Weiterhin zeigt sich, dass Mutationen in ofrA, die Produktion des Virulenzfaktors Staphyloxanthin über den oberen Mevalonatweg beeinflussen. Insgesamt liefert die vorliegende Arbeit neue Einblicke in die Funktion und Verbeitung von OfrA, einem neuen Vertreter aus der Klasse der OYEs. Die vorliegenden Ergebnisse ermöglichen somit auch ein besseres Verständnis konservierter Strategien der Stressantwort bei Bakterien und deren Bedeutung während des Infektionsgeschehens.

Thesis (Ph. D.)--University of Missouri--Columbia, 1998. / Typescript. Vita. Includes bibliographical references (leaves: [89]-98). Also available on the Internet.

A specific method has been developed for the extraction and measurement of staphylococcal nuclease in cheese in which Staphylococcus aureus has grown. Ten grams of cheese sample were homogenized with ninety milliliters of pH ten buffer for three minutes. Ammonium sulfate fractionation was used and a forty to eighty percent fraction was collected and concentrated using ultrafilters. The nuclease activity was determined using a toluidine blue deoxyribonucleic acid agar slide method and a spectophotometric method. The DNA agar slide method was used to compare staphylococcal growth with nuclease production in cheese under varying conditions. When Staphylococcus aureus plate counts indicated populations of three to four thousand per milliliter, it was possible to detect nuclease in the cheese sample. A method has also been developed to detect Staphylococcus aureus colonies using DNase agar and toluidine blue, utilizing the heat stability of Staphylococcus aureus nuclease.

Submitted by Priscila Nascimento (pnascimento@icict.fiocruz.br) on 2012-12-13T12:38:59Z No. of bitstreams: 1 marne-chagas.pdf: 1100888 bytes, checksum: 7a199f01e03cd65e615b7c57af7901f0 (MD5) / Made available in DSpace on 2012-12-13T12:38:59Z (GMT). No. of bitstreams: 1 marne-chagas.pdf: 1100888 bytes, checksum: 7a199f01e03cd65e615b7c57af7901f0 (MD5) Previous issue date: 2011 / Fundação Oswaldo Cruz. Instituto de Tecnologia em Imunobiológicos. Rio de Janeiro, RJ, Brasil. / O surgimento de resistência a antimicrobianos em bactérias está se agravando ano após ano, constituindo-se um problema de saúde pública em hospitais e centros de tratamento ao redor do mundo. No Brasil, a resistência a meticilina em Staphylococcus aureus(MRSA) chega a 29 % dos casos detectados anualmente. Atualmente, a metodologia convencional para a identificação de MRSA pode levar 48 horas, portanto, este trabalho tem por objetivo o desenvolvimento de um teste para diagnóstico rápido baseado na tecnologia de imunocromatografia de fluxo lateral usando um anticorpo específico contra a proteína PBP2a, a qual confere resistência ao Staphylococcus aureus, permitindo a identificação em minutos, a partir de colônias isoladas. O anticorpo monoclonalanti-PBP2a foi purificado e empregado em um processo de conjugação a microesferas de látex coloridas para a implementação do teste rápido. Os resultados iniciais demonstraram a capacidade do anticorpo de reconhecer a PBP2a em amostras de MRSA, porém foram observados problemas de inespecificidade que deverão ser solucionados para dar confiabilidade ao teste proposto. / The emergence of antibiotic resistance in bacteria is getting worse year after year, becoming a public health problem in hospitals and treatment centers around the world. In Brazil, methicillin resistance in Staphylococcus aureus(MRSA) reaches 29% of cases detected annually. Currently, the conventional methodology for identification of MRSA may take 48 hours of lengthyphenotypical tests, so this work aims at developing a rapid diagnostic test based onthe lateral flow immunochromatography protocol using a specific antibody against the protein PBP2a, which confers the methicillin-resistance phenotype to Staphylococcus aureus, allowing a prompt identification from isolated colonies. The monoclonal antibody anti-PBP2a was purified and used in a process of conjugation to colored latex microspheres for the implementation of the rapid test. Initial results demonstrated the ability of the antibody to recognize the PBP2a in samples of MRSA, but inespecificity issues will have to be solved to improve reliability of the test proposed.

Orientador: Maria de Lourdes Ribeiro de Souza da Cunha / Resumo: A epidemiologia das infecções estafilocócicas tem sofrido importante modificação nas últimas décadas. A emergência de linhagens de Staphylococcus aureus resistentes à meticilina associados à comunidade (CA-MRSA) representa risco especial para populações reconhecidamente vulneráveis como os idosos. Neste âmbito, duas situações distintas são de especial interesse: os indivíduos institucionalizados, vivendo em casas de repouso, que representam um espaço intermediário entre a comunidade e o hospital; e os dependentes (acamados) cuidados em domicílio, expostos de forma intermitente aos serviços de saúde. Nosso objetivo foi identificar a prevalência e fatores associados ao carreamento nasal, oral e retal de S. aureus e MRSA em indivíduos acamados ou residindo em instituições de longa permanência para idosos (ILPIs) no município de Botucatu, SP, bem como a identificação de clones importantes de S. aureus e MRSA nessa população. Estudo com delineamento transversal, em que swabs da nasofaringe, orofaringe e reto de 226 indivíduos (150 residentes em nove ILPIs e 76 acamados em domicílio) foram coletados juntamente com um questionário que, através de entrevista com o próprio indivíduo ou responsável legal, levantou informações como dados demográficos (gênero e idade), tempo de institucionalização ou restrição ao leito, dados clínicos (comorbidades), dispositivos invasivos, internações recentes, doenças infeccionas e uso de antimicrobianos, para identificação dos fatores de risco. O isol... (Resumo completo, clicar acesso eletrônico abaixo) / Abstract: The epidemiology of staphylococcal infections has undergone important changes in recent decades. The emergence of community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) strains represents a special risk to populations recognized as vulnerable, such as the elderly. Within this context, two different situations are of special interest: institutionalized individuals living in nursing homes, which represent an intermediary space between the community and the hospital, and dependent (bedridden) patients cared for at home, who are intermittently exposed to health services. Our objective was to determine the prevalence and factors associated with nasal, oral and rectal carriage of S. aureus and MRSA in bedridden patients and residents of long-term care facilities (LTCF) for the elderly in the city of Botucatu, SP, and to identify important S. aureus and MRSA clones in this population. In a cross-sectional study, nasopharyngeal, oropharyngeal and rectal swab samples were collected from 226 individuals (150 individuals from nine LTCF and 76 bedridden patients living at home). In addition, a questionnaire was applied by interview with the subject himself or the legal representative for the collection of demographic data (gender and age), length of institutionalization or bedridden period, clinical data (comorbidities), invasive devices, recent hospitalizations, infectious diseases, and antimicrobial use in order to identify risk factors. Staphylococcus aureus was is... (Complete abstract click electronic access below) / Mestre

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Methicillin-resistant Staphylococcus aureus (MRSA) is an important nosocomial pathogen associated with significant morbidity and mortality. Previous colonisation with this pathogen is a risk factor for the development of subsequent infection. Tolllike receptors (TLRs) are a family of transmembrane receptors of the innate immune system that recognize pathogen-associated molecular patterns. The role of nasal colonisation of S. aureus has started to receive more attention. In spite of this, there are not enough studies looking at its effects on human primary nasal epithelial cells and their response to TLR ligands. The respiratory tract itself seems to pose a contradiction given by the clinical observation that its upper portion (nasal compartment) allows the growth of bacteria, acting like a reservoir, whereas the lower portion (lung compartment) reacts with an exuberant inflammatory response to the same organisms, as noted during pneumonia. The mechanism related with this phenomenon remains to be elucidated. A negative regulator of the TLR signalling cascade called toll-interacting protein (tollip) has been demonstrated to induce hyporesponsiveness in the gastrointestinal tract in the presence of bacteria. So far, tollip has not been demonstrated in the respiratory tract. Aims: To compare the responses of the upper and lower respiratory tract to TLR ligands, to characterise the role of tollip in the respiratory tract and its effects in the induction of tolerance, and to determine the cellular response to nasal carriage of S. aureus. Materials and Methods: The cell line RPMI 2650 (representative of nasal epithelium) and the cell line A549 (representative of type II alveolar epithelium) were used to establish the cytokine response to stimulation with TLR ligands and to demonstrate the presence of tollip protein by immunocytochemistry and enzymelinked immunosorbent assay (ELISA). Primary human nasal epithelial and type II alveolar epithelial cells were isolated and cultured from consented subjects. The cytokine response to stimulation was measured using cytokine bead array and the presence of tollip was determined by immunofluorescence and quantitative polymerase chain reaction. The presence of TLRs was assessed by immunocytochemistry in primary nasal and type II alveolar epithelial cells and the response to stimulation with the TLR9 agonist CpG-C ODN was assessed in these cells as well as in primary human type II alveolar epithelial cells. Subjects were also assessed for nasal carriage of S. aureus and their associated cytokine responses. Results: The RPMI 2650 cell line, despite retaining phenotypic characteristics of the nasal epithelium, appears unresponsive to stimulation with TLR ligands. In contrast, the A549 cell line responded significantly to stimulation with TLR ligands. Primary human nasal epithelial cells responded by secreting higher amounts of interleukin (IL)-8 and IL-6 in response to stimulation with S. aureus peptidoglycan (PGN) and tumour necrosis factor alpha (TNF-α) with a strong trend toward statistical significance. These cells did not respond to stimulation with Pseudomonas aeruginosa LPS. Primary type II alveolar epithelial cells responded significantly to stimulation with S. aureus PGN by increasing the secretion of IL-8, IL-6, IL-1β, TNF-α and IL-10 into cultured supernatant. Cells from the upper respiratory tract displayed a more tolerant phenotype given by the lower levels in cytokine production in response to stimulation with S. aureus PGN, in contrast to alveolar epithelial cells. TLRs were identified in primary nasal epithelial cells. The negative regulator tollip was identified in cell lines as well as primary cells of the respiratory tract in its three segments: nasal, bronchial and type II alveolar. It was not possible to demonstrate an up-regulation of tollip after stimulation with TLR ligands in any of the cell types studied, although, it was possible to observe a significantly higher constitutive level in tollip mRNA transcripts from primary nasal epithelial cells in comparison to type II alveolar epithelial cells. TLR9 was identified in human primary nasal epithelial cells, although it was not possible to observe an increase in cytokine production after stimulation with a TLR9 agonist. TLR9 was expressed strongly in primary type II alveolar epithelial cells which responded by significantly increasing IL-8 production after stimulation with CpG-C ODN. Primary nasal epithelial cells from individuals who carry S. aureus exhibit a proinflammatory profile, as evidenced by higher basal levels of IL-8 and IL-6 in comparison to non-colonised controls. Conclusion: The upper respiratory tract epithelium displays a tolerant phenotype in response to stimulation with TLR ligands in comparison to the lower respiratory epithelium, potentially favouring nasal colonisation by S. aureus. Tollip m-RNA transcripts appear to be up-regulated constitutively in the nasal epithelium which might favour this response. Staphylococcus aureus colonisation is however associated with a local pro-inflammatory state in the nasal epithelium of carrier individuals.