<p>Adhesives  are  found  in  almost  every  aspect  of  the  modern  world.  They  are  found  in plywood used in buildings, electronics, shoes, plumbing and in almost every facet of your daily life. Nature also has an abundance of these adhesives that are used fora multitude of applications. Some  animals, like  the  blue  mussel, use  their  adhesive  for  protection  against  ocean  waves  and predators  while other animals, such  as  the  spider, use  it  to  trap  prey. Investigation  of  theses adhesives has led to the identification of several different proteins that allow for these animals to make  their  adhesive.  Some  of  them  are  composed of rare  amino  acids that  while  other  animals use  a combination  of  inorganic  and  organic  components.  Understanding  of  these  unique adhesives  can be  a  boon  for designof future  adhesives  that  do  not  have  the disadvantagesof current day commercialized glues.</p> <p>Increasing interest  in  the  restoration  of  natural  oyster  reefs  and  the  cement  that  holds them  together  has  resulted  in  the  identification  of  the  Shelk2  protein  that  is  found  both  in  the mantle  of  the  oyster’s  shell  as  well  as  the  cement  that  holds  the  reefs  together. Gaining  an understanding  of  how  this  protein  functions  and  its  part  in  the  oyster  reef  could  be  quite beneficial  for  projects  investing  in  reef  restorations  as  well  as  underwater  adhesion.  Gathering protein  from  the  animal  for  experimentation  and  characterization  can  be  labor  intensive  and extremely challenging. Luckily, cloning technology has become a useful tool for the expression of large quantities of proteins that can be difficult or impossible to gather from the native animal. Using <em>E. coli</em>, it  is  possible  to design  and express  this protein  in  hopes  of  gaining  a  better understanding of its impact on oyster settlement and adhesion.</p> <p>Sustainability is a major downside to current day adhesives that current technologies have not  been  able  to  solve. Most adhesives  that  are  on  the  market  today  are  primarily  derived  from petroleum. Current  research  has  begun  investigating  alternatives  to  the  large   epoxy   and formaldehyde  adhesive  market,  but  the  barrier  of  entry  is  hard  to  overcome.  To  replace  these glues  the  new  material  must  be  affordable,  non-petroleum  derived,  and  available  on  a  massive scale.  These  requirements  are  hard  to  meet  for  many  materials  and  due  to  that  the  current  bio-adhesive are generally very low strength.</p> <p>The work presented here will detail the characterization, and expression of some of these natural  adhesives that  have  been  found  in  the  Eastern  oyster. Another  aspect of  this  work includes the synthesis of a new bio-based adhesive system. Utilizing biomimetic chemistry along with  sustainably  sourced  materials  a  new  adhesive  has  been  formulated that  has  comparable adhesive strength to current day commercial adhesives.</p>

<p>  </p> <p>The next generation of nuclear reactor designs promise to provide clean, safe, and efficient energy to address our current climate crisis. But with these new technologies, nuclear fuel materials must be carefully designed and understood to meet these demands. Candidate oxide and metallic nuclear fuel materials being considered for use in these new reactor technologies, despite their potential, still have significant remaining materials challenges in understanding their long-term performance and integrity under extreme reactor conditions. As such these candidate fuels require extensive materials characterization to understand their long-term performance under reactor conditions. The objective of this study is to evaluate the microstructural evolution of candidate fuels U-50wt%Zr and ThO2 under the following contexts: 1) Investigation of phase stability in candidate metallic fuel U-50wt%Zr under thermal and irradiation treatment; 2) Investigate localized thermal properties of candidate oxide fuel ThO2 under irradiation through a novel correlative microscopy approach. </p> <p>The influence of thermal and irradiation treatment on phase stability in δ-U50wt%Zr was investigated through conventional APT-TEM methodology. U-Zr is a candidate metallic fuel for advanced fast reactor applications. However, there is still work remaining to better understand how these materials evolve under extreme reactor conditions, especially for the δU-50wt%Zr composition. Metallic fuels are susceptible to significant chemical redistribution under extreme conditions resulting in potential degradation of fuel properties and performance. In these experiments, U-50wt%Zr was subjected to thermal annealing and proton irradiation respectively. These treatments produced very different modulated structures in U-50wt%Zr, and the implications of such on phase stability in U-50wt%Zr will be discussed.</p> <p>Additionally, long-term nuclear reactor operation hinges upon efficient thermal transport in nuclear fuels. There is a critical need to understand localized thermal transport in these materials to enable intelligent design of high-performance fuels. A novel correlative atom probe tomography (APT)-transmission electron microscopy (TEM) approach was developed to investigate the influence of irradiation defects on localized thermal diffusivity in ThO2 upon proton irradiation, and implications of such results will be discussed. </p>

<p dir="ltr">The recent COVID-19 pandemic has emphasized the risk of respiratory infections leading to acute respiratory distress syndrome (ARDS). A significant factor contributing to poor ARDS outcomes is the impairment of lung surfactant due to infiltrating surface-active proteins and phospholipases during lung inflammation. Lung surfactant's vital role in stabilizing alveoli by reducing air-water interfacial tension becomes evident as its dysfunction severely compromises respiratory function. Although lung surfactant (LS) replacement therapy effectively addresses neonatal LS deficiencies, its efficacy in ARDS treatment for adults remains limited. The challenge lies in the chemical similarity between current animal-extracted surfactants and human lung surfactant which are both phospholipid-based. To address this issue, this dissertation outlines a transformative "polymer lung surfactant (PLS)" designed to overcome the limitations of conventional exogenous surfactants in treating ARDS.</p><p dir="ltr">Firstly, a formulation method, referred to as equilibration-nanoprecipitation (ENP), is established which achieves reproducibility, controls sizing, and limits dispersity of the PLS formulation consisting of block copolymer (BCP) kinetically "frozen" micelles/nanoparticles suspended in water. The method uses a two-step approach of 1) equilibrating the BCP nanoparticles in a water/co-solvent mixture and 2) removing co-solvent using dialysis against a large water reservoir. Comparison of ENP with a conventional solvent-exchange technique through experimental and computational analysis yields further insights into ENP's advantages.</p><p dir="ltr">Next, various studies are highlighted which provide fundamental characterizations of the air-water surface behavior and physical properties of BCP nanoparticles in water. The air-water surface properties of block copolymers have been studied extensively when spread as free chains in organic solvent; however, little was previously known about air-water interfacial behavior of water-spread polymer nanoparticles. The studies address such topics as the effect of nanoparticle size, effect of nanoparticle core chemistry, and the effect of temperature on surface-mechanical behavior. Insights into nanoparticle molecular structure at the interface are provided through X-ray reflectivity and grazing incidence X-ray diffraction. The effect of temperature is further characterized by developing novel NMR and Langmuir trough methods to determine the physical state (glassy vs rubbery) of the core domain in the nanoconfined state at temperatures above and below physiologic temperature.</p><p dir="ltr">Lastly, <i>in vivo </i>studies are presented which demonstrate the detailed and promising proof-of-concept results on the efficacy of the PLS technology in mouse models of lung injury. The PLS therapy not only improves biomechanical function of the lung, but it also significantly lowers the extent of lung injury as shown by histological analysis and inflammatory marker measurements. An additional <i>in vivo </i>study is presented which highlights challenges in the delivery of the liquid PLS suspension to the lungs. The <i>in vivo </i>studies ultimately provide solid motivation for continued research into the development of the PLS therapy.</p><p dir="ltr">Given the promising potential of the PLS technology shown in the <i>in vivo</i> studies, the materials characterizations shared in this presentation offer valuable insights into the design of a novel PLS therapy. From these insights, key design parameters such as nanoparticle size characteristics, core chemistry, and core molecular weight can be chosen to produce the most desirable material properties. Overall, this dissertation furthers the progress of PLS therapeutic development and will hopefully ultimately contribute to improved health outcomes in patients suffering from ARDS.</p>

<p dir="ltr">Conducting polymers have garnered enormous attention due to their unique properties, including tunable chemical structure, high flexibility, solution processability, and biocompatibility. They hold promising applications in flexible electronics, renewable energies, sensing, and healthcare. Despite notable progress in conducting polymers over the past few decades, most of them still suffer from complicated synthesis routes, limited processability, low electrical conductivity, and poor ambient stability compared to their inorganic counterparts. Additionally, the susceptibility of conducting polymers to high temperatures makes them not applicable in real-life electronics. To address the challenges of developing high-performance and stable conducting polymers, we present two key approaches: dopant innovation for polymer-dopant interaction engineering and the discovery of new conjugated polymer hosts. From the perspective of dopant design, we first utilize cross-linkable chlorosilanes (C-Si) to design thermally and chemically stable conductive polymer composites. C-Si can form robust siloxane networks and simultaneously<i> </i>dope the host conjugated polymers. Besides, we have introduced a new class of dopants, namely aromatic ionic dopants (AIDs). The use of AIDs allows for the separation of doping and charge compensation, two processes involved in molecular doping, and therefore leads to highly efficient doping and thermally stable doped systems. We then provide insights into the design of novel conjugated polymer hosts. Remarkably, we have developed the first thermodynamically stable n-type conducting polymer, n-doped Poly (3,7-dihydrobenzo[1,2-b:4,5-b′]difuran-2,6-dione) (n-PBDF). n-PBDF is synthesized from a simple and scalable route, involving oxidative polymerization and reductive doping in one pot in the air. The n-PBDF ink is solution processable with excellent ink stability and the n-PBDF thin film is highly conductive, transparent, patternable, and robust. In addition, precise control over the doping levels of n-PBDF has been achieved through chemical doping and dedoping. By tuning the n-PBDF thin films between highly doped and dedoped states, the system shows controllable conductivity, optical properties, and energetics, thereby offering potential applications in a variety of organic electronics. Overall, this research advances the fundamental understanding of molecular doping and offers insights for the development of high-conductivity, stable conducting polymers with tunable properties for next-generation electronics.</p>

<p dir="ltr">Nanoparticles have seen immense development in the past several decades due to their intriguing physicochemical properties. The modern chemist is interested not only in methods of synthesizing nanoparticles with tunable properties but also in the chemistry that nanoparticles can drive. While several methods exist to synthesize nanoparticles, it is often advantageous to put nanoparticles on a variety of conductive substrates for multiple applications (such as energy storage and conversion). Despite enjoying over 200 years of development, the electrodeposition of nanoparticles suffers from a lack of control over nanoparticle size and morphology. Understanding that structure-function studies are imperative to understand the chemistry of nanoparticles, new methods are necessary to electrodeposit a variety of nanoparticles with control over macro-morphology but also microstructure. When a nanodroplet full of a metal salt precursor is incident on the electrode biased sufficiently negative to drive electroplating, nanoparticles form at a shocking rate (on the order of microseconds to milliseconds). We start with the general nuts-and-bolts of the experiment (nanodroplet formation and methods for electrodeposition). The deposition of new nanomaterials often requires one to develop new methods of measurement, and we detail new measurement tools for quantifying nanoparticle porosity and nanopore tortuosity within single nanodroplets. Owing to the small size of the nanodroplets and fast mass transfer, the use of nanodroplets also allows the electrodeposition of high entropy alloy nanoparticles at room temperature. Electrodeposition in aqueous nanodroplets can also be combined with stochastic electrochemistry for a variety of interesting studies. We detail the quantification of the growth kinetics of single nanoparticles in single aqueous nanodroplets. Nanodroplets can also be used as tiny reactors to trap only a few molecules, and the reactivity of those molecules can be electrochemically probed and evaluated with time. Overall, this burgeoning synthetic tool is providing unexpected avenues of tunability of metal nanoparticles on conductive substrates. Moreover, there is little understanding of how ion transfer can affect the fundamental of nanoparticle synthesis with nanodroplet-mediated electrodeposition. This thesis details different experiments performed to study the role of ion transfer during the nucleation and growth of nanoparticles.</p>

<p dir="ltr">DNA sequence design requires the ability to identify possible tertiary structural defects, secondary structure disruptions, and self-complimentary stretches that will disallow your complimentary strands to come together to form the desired duplex design. However, there is a need for those self-complimentary stretches, especially when designed with the intent for this to homo-oligomerize into the desired building block. With the programmability of nucleic acid hybridization, there is an expanding field wherein this specific, self-complimentary design feature can give new possibility of fine-tuning DNA self-assembly (Chapter 1) or overcome a previously thought limit of DNA ligation (Chapter 2).</p><p dir="ltr">The first chapter will closely look at the branched kissing loop interaction. This interaction was studied as a homo-polymerizable DNA building block that is topologically closed. As such, this paranemic motif has increased stability due to the Watson-Crick base pairing being “protected” by a 3-base adenine branch which close the loop of the sticky-end, meaning no free ends in the binding region. With this, herein we report that the intended higher-level structure could influence the lower-level building block formation. In DNA nanotechnology, this could mean the final higher-level structure would allow for fine-tuning as this would dictate the building blocks that fill in the defected parts of the higher-level structure.</p><p dir="ltr">The second chapter looks at the more finite than broad picture. Whilst the first chapter focusses on the impact the microscale has on the nanoscale through a homo-polymerizable design, the second chapter focusses on the ability to break barriers with homo-polymerizable design. In this chapter, we prove that with our splint strand design, when improved with a hairpin loop on the terminal ends, we can ligate DNA strands enzymatically as short as 16 nucleotides with an efficiency of 97% at high concentrations (100 uM). These hairpins allow for a stable, robust splint strand as they are a self-complimentary region which will maintain its shape throughout the process of joining together the 5’ and 3’ ends of the target strand.</p><p dir="ltr">Overall, this dissertation hopes to prove that homo-polymerizable DNA sequence designs are helping expand upon the DNA nanotechnology toolbox by introducing new possibilities for nanoscale design, as well as push past previously held boundaries through necessary added stability afforded by the self-complimentary strands.</p>

<p>Soft robotics is concerned with the modeling and designing of devices fabricated from materials with low Young’s moduli—much less than that of metal— that mimic the input/output operation and physical task utility of robotics.  The inherent compliance of soft robots lends these devices an adaptability and a capacity for human-machine interaction beyond that of conventional robotics. Multistable soft robotic grippers are a subset of the technology at the intersection of soft robotics and multistable structures. Multistable structures are continuum systems that exhibit more than one statically stable state, each associated with a strain energy minimum. The existence of these energetic minima allows the structures to adopt different stable configurations that can provide a reference point for open loop control schemes. Multistable soft robotics takes advantage of both the adaptability of soft robotics and the potential for simplified control of multistable structures.</p> <p>Achieving simplified control for soft robotics is a necessary milestone in creating functional and applied soft robots. </p> <p>This work presents a means for simple open-loop control of a multistable soft robotic gripper that is adaptable, controllable, and robust. The behavior is illustrated through a gripper geometry described by specific design parameters resulting in a near infinite design space. An analytical model based on lumped parameter springs is derived, allowing us to search the design space in a tractable fashion. Specifically, we predict the system’s stable states for any given design instance by searching for local minima in the energy landscape formed by a spring lattice representation of our device. The lattice is composed of linear, bistable, and torsional springs—each of which contributes to the energy landscape of the system. We validate our model against Finite Element simulations of our device, showing good agreement with the proposed model. The aptitude of the model sheds light on the fundamental mechanics of our soft robotic gripper topology, laying the foundation for efficient design optimization and simplified control of soft robots.</p>

<p dir="ltr">Photovoltaics are leading devices in green energy production. Understanding the fundamental physics behind energy transport in candidate materials for future photovoltaic and optoelectronic devices is necessary to both realize material limitations and improve efficiency. Excitons, which are bound electron-hole pairs, are central to determining how energy propagates throughout semiconductors. Exciton transport is greatly influenced by material dimensionality. In highly ordered quantum dot (QD) systems, electronic coupling between individual QDs can lead to coherent exciton transport, whereas in two-dimensional heterostructures, excitons can form at the interface of a heterojunction, creating charge-transfer excitons.</p><p dir="ltr">This dissertation is dedicated to summarizing the studies of exciton transport and behavior in two systems: perovskite QD superlattices and transition metal dichalcogenide (TMDC)/polyacene heterostructures. Chapter 1 provides readers with details on these materials in addition to information on the fundamental concepts (i.e., excitons, phonons, energy transfer) needed to best appreciate further chapters. Chapter 2 summarizes the spectroscopic techniques (photoluminescence and transient absorption spectroscopy and microscopy) used to examine exciton behavior. Next, the effects of disorder and dephasing pathways on the ability of perovskite QDs to coherently couple is investigated through the lens of superradiance in Chapter 3. After this, the temperature-dependent exciton transport within perovskite QD superlattices is imaged with high spatial and temporal resolutions in Chapter 4. The experimental transport data on these superlattices provides evidence for environment-assisted quantum transport, which, until this study, had yet to be realized in solid-state systems. In Chapter 5, attention is switched to verifying the existence and deepening the understanding of the behavior of several spatially separated interlayer excitons in a tungsten disulfide/tetracene heterostructure. Finally, Chapter 6 summarizes the preliminary results obtained through transient absorption spectroscopy on other TMDC/polyacene heterostructures where separation of the triplet pair state is attempted. </p><p dir="ltr">It is this author’s hope that this dissertation will not only summarize their graduate work but will also serve as inspiration for others to continue learning and contribute to the advancement of the energy research field.</p>

<p>Carbon fiber bending during Carbon Fiber Reinforced Plastic (CFRP) milling is an important factor on the quality of the machined surface. When the milling tool rotates, the fiber first contacts the rake face instead of the tool edge at a certain cutting angle, then the fiber is bent instead of being cut by the tool. It causes the matrix and the fiber to fall out, and the fiber is broken from deep inside the machined surface. The broken fibers are pulled out as the tool rotates, which is known as pull-out fibers. The machining defect is the main cause of deteriorating the quality of the machined surface. To reduce such machining defects, it is important to predict the carbon fiber bending during CFRP milling. However, it is difficult to determine a point where fiber bending occurs because the fiber cutting angle changes every moment as the tool rotates. Therefore, in this study, CFRP milling simulation was performed to numerically analyze the machining parameters such as fiber cutting angle, fiber length, and the magnitude of fiber bending according to the different milling conditions. In addition, the deformation of the matrix existing between carbon fibers is predicted based on the fiber bending information obtained through simulation, and matrix shear strain energy model is developed. Also, the relationship between the matrix shear strain energy and machining quality is analyzed. Through verification experiments under various machining conditions, it is confirmed that the quality of the machined surface deteriorated as the matrix shear strain energy increased. Moreover, this study analyzed the fiber cutting mechanism considering bent fibers during CFRP milling and proposed a method to identify the type of machining mechanism through machining sound analysis. Through experiments, it was verified that fiber bending or defects can be identified through machining sound analysis in the high-frequency range between 7,500 Hz and 14,800 Hz. From the analysis, the effect of different chip thickness in up-milling and down-milling on fiber bending was investigated by analyzing simulation and sound signal. From machining experiments, the effect of this difference on cutting force and machining quality was verified. Lastly, we developed a minimum chip thickness and fiber fracture model in CFRP milling and analyzed the effect of fractured fibers on the machining sound. Carbon fibers located below the minimum chip thickness do not contact the tool edge and are compressed by the bottom face of the tool, and these fibers are excessively bent and broken. As these broken fibers are discharged while scratching the flank face of the tool, a loud machining sound is generated. Moreover, through the verification experiment, it was confirmed that the number of broken fibers is proportional to the loudness of the sound, and calculated number of broken fibers for one second using the fiber fracture model coincides with the high-frequency machining sound range of 7,500 Hz to 14,800 Hz.</p>

<p> </p> <p>Learning about ‘behavior’ has always been at the heart of my research endeavors. While my undergraduate work in evolution and ecology exposed me to the science behind why a behavior exists, in my graduate work, I intended to explore how to use something’s behavior to widen its applicability. In this thesis, <em>I will present three works that utilize some of the fundamental</em></p> <p><em>behaviors (i.e., properties) of elastin-like polypeptides (ELP) to improve existing protein purification methods or explore their applicability in bladder cancer imaging and immunotherapy. </em></p> <p>Bladder cancer has high recurrence rates (60-70 % annually) that necessitate multiple follow-up therapies making it one of the costliest cancers per patient. In this work, we have attempted to address two leading causes of the recurrence. First is a low sensitivity (62-84 %) and variable specificity (43-95 %) of white light cystoscopy used to diagnose and remove tumors. We aimed to address the heart of this problem, i.e., the non-specific mode of detection using white light. Only the trained eyes can discern abnormal from normal-appearing tissues even then, leaving up to 45% of tumors unresected to colonize and spread. <em>We developed and characterized near infrared dye-peptide-ligand conjugates (NIR-ELP-ligand) that undergo receptor-mediated binding and internalization to human bladder cancer cells in vitro and tissues ex vivo.</em> By using a molecular target-based probe in combination with NIR imaging, we can aid in improving the detection limit via selective binding to the tumor and reduction in background autofluorescence.</p> <p>Bacillus-Calmette Guérin (BCG) instillation in the bladder is the gold-standard</p> <p>immunotherapy used after surgical removal of bladder tumors. This was approved as a response to the inefficiency of surgery alone in improving cancer status. It has succeeded by reducing the recurrence rate to 30-50 %. But it comes with the complications of putting a live mycobacterium</p> <p>in the human body and giving a patient a urinary tract infection right after surgical tumor resection. <em>Thus, we aimed to deliver nucleic acid as immunotherapeutic cargo in a selective manner to elicit robust anti-tumor immune responses while minimizing the side effects due to its carrier.</em> Towards</p> <p>this goal, we have developed a highly modular and adaptable ELP-ligand fusion protein-based nucleic acid delivery carrier targeted toward bladder cancer. Before developing targeted peptide-based cancer imaging and nucleic acid delivery modalities, we addressed the Achilles heel of peptide-based approaches. The peptide and protein industry suffers</p> <p>through complex, time-consuming, inconsistent, and low-yielding purification methods. <em>We have developed a scalable, facile, and reproducible protein purification method that delivers ELP and ELP fusion proteins free of host cell proteins and nucleic acids and has low lipopolysaccharide</em></p> <p><em>content in just 3 h starting from a bacterial pellet. </em>Thus, for a coherent narrative, the thesis is structured as follows:</p> <p>1. Introduction</p> <p>2. ELP as a protein purification tag: Development of a rapid purification method for ELPs and ELP fusion proteins.</p> <p>3. ELP as a cancer imaging agent: Development of NIR-ELP-Ligand imaging probe targeting bladder cancer.</p> <p>4. ELP as a drug delivery agent: Utilizing ELP-ligand fusion protein in the formulation of targeted nucleic acid delivery carrier to bladder cancer.</p>