<p>Biological systems have inspired interest in developing artificial molecular self-assembly techniques that imitate nature's ability to harness chemical forces to specifically position atoms within intricate assemblies. Of the biomolecules used to mimic nature's abilities, nucleic acids have gained special attention. Specifically, deoxyribonucleic acid is a stable molecule with a readily accessible code that exhibits predictable and programmable intermolecular interactions. These properties are exploited in the revolutionary structural DNA nanotechnology method known as scaffolded DNA origami. For DNA origami to establish itself as a widely used method for creating self-assembling, complex, functional materials, current limitations need to be overcome and new methods need to be established to move forward with developing structures for diverse applications in many fields. The limitations discussed in this dissertation include 1) pushing the scale of well-formed, fully-addressable origami to two and seven times the size of conventional origami, 2) testing cost-effective staple strand synthesis methods for producing pools of oligos for a specified origami, and 3) engineering mechanical properties using non-natural nucleotides in DNA assemblies. After accomplishing the above, we're able to design complex DNA origami structures that incorporate many of the current developments in the field into a useful material with applicability in wide-ranging fields, namely cell biology and photonics.</p> / Dissertation

Thesis (Ph. D.)--University of Washington, 2007. / Vita. Includes bibliographical references (leaves 88-106).

No description available.

Thesis (Ph. D.)--University of Washington, 2001. / Vita. Includes bibliographical references (leaves 114-146).

Human cells from acute myeloid leukemia (AML) patients are frequently transplanted into immune-compromised mouse strains to provide an in vivo environment for studies on the biology of the disease. Since frequencies of leukemia re-initiating cells are low and a unique cell surface phenotype that includes all tumor re-initiating activity remains unknown, the underlying mechanisms leading to limitations in the xenotransplantation assay need to be understood and overcome to obtain robust engraftment of AML-containing samples. We report here that in the NSG xenotransplantation assay, the large majority of mononucleated cells from patients with AML fail to establish a reproducible myeloid engraftment despite high donor chimerism. Instead, donor-derived cells mainly consist of polyclonal disease-unrelated expanded co-transplanted human T lymphocytes that induce xenogeneic graft versus host disease and mask the engraftment of human AML in mice. Engraftment of mainly myeloid cell types can be enforced by the prevention of T cell expansion through the depletion of lymphocytes from the graft prior transplantation.

Thesis (MScMedSc (Pathology. Medical Virology))--University of Stellenbosch, 2009. / ENGLISH ABSTRACT: In 2007, AIDS caused an estimated 2.1 millions deaths worldwide; about 70% in sub-Saharan Africa. HIV preferentially targets activated CD4 T cells, expressing the major HIV receptor CD4, as well as the major chemokine coreceptors CCR5 and CXCR4. These coreceptors play a prominent role during HIV cell entrance phase, HIV transmission and also disease progression. They have been found to be differentially expressed by CD4 T cell subsets. Tuberculosis coinfection may enhance immune activation in vivo thus accelerating HIV disease progression and has become a major challenge in the control of TB in Africa. Introduction of HAART has reduced disease progression to AIDS, as well as risk of further morbidity and mortality. HAART results in a rapid decline of viral load and an initial increase of peripheral CD4 count, however little is known on the effect of HAART in regulation of coreceptor expression, immune activation status and CD4 T cell subset distribution in HIV infection and HIV/TB coinfection. This study is a cross-sectional analysis of coreceptor expression, immune activation status and CD4 T cell subpopulation distribution in South African HIV and HIV/TB coinfected patients before and after ARV. A total of 137 South African individuals were investigated, comprising 15 healthy normal donors (healthy subgroup), 10 patients with active pulmonary tuberculosis (PTB subgroup), 33 HIV-1 positive patients without active PTB (HIV subgroup), 23 positive patients with active PTB (HIV/PTB subgroup), 36 HIV-1 positive patients on ARV (HIV on ARV subgroup) and 20 HIV-1 positive patients with active PTB on ARV (HIV/PTB on ARV subgroup). CD4 absolute count and plasma viral load were determined for all donors. Freshly isolated PBMC were classified by flow cytometry into the following CD4+ T lymphocyte subsets: naïve (CD45+, CD27+), effector memory (CD45-, CD27-), central memory (CD45-, CD27+), and effector (CD45+, CD27-). Coreceptor expression and activation status was assessed by CCR5, CXCR4 and CD38 expression on CD4 T cell subsets. HIV, TB and HIV/TB coinfection was associated with a decrease in percentage CCR5+ T cells as compared to healthy controls, with the HIV/TB group showing the most extensive decrease. In treatment naive patients, CD4 T cells showed elevated surface expression of CCR5 and CD38 as determined by mean fluorescence intensity in HIV/TB co-infection compared to HIV infection alone. The percentage of antigen-experienced cells was higher in the HIV/TB co-infected group compared to the HIV group. The percentage of naïve T cells was decreased in both the HIV infected and the HIV/TB co-infected groups compared to healthy controls. HIV patients with more than 6 months of ARV showed decreased CCR5 and CD38 surface level expression in the HIV and the HIV/ TB co-infected subgroups. An increased percentage of naïve T cells was observed in the HIV infected subgroup, but not in the HIV/TB subgroup, similarly, a decreased percentage of antigen-experienced cells was observed in the HIV subgroup, but not in the HIV/TB co-infected subgroup. A positive correlation was found between CCR5 and CD38 expression, and CXCR4 and CD38 expression (Spearman coefficient of correlation respectively: r=0.59, p<0.001 and r=0.55, p<0.001). Furthermore we found plasma viral load positively associated with CD38 expression (r=0.31, p<0.001) and percentage activated CCR5+ expressing CD4 T cells positively related to viral load (r=0.31, p<0.001). Percentage naïve CD4 T cells was positively associated with CD4 count (r=0.60, p<0.001) and negatively correlated to viral load (r=-0.42, p<0.001). These results indicate that TB coinfection exacerbates certain aspects of dysregulation of CD4 T cell homeostasis and activation caused by HIV infection. In addition, ARV-associated decrease in coreceptor expression, immune activation status and a normalisation of CD4 T cell subset distribution was observed in HIV infected individuals, but not in HIV/TB coinfection. Despite viral suppression after ARV treatment, the decline in the immune activation marker CD38 and coreceptor CCR5 expression, increase in percentage naïve CD4 T cells and decrease of antigen-experienced cells did not reach the levels displayed in the healthy control group. This may indicate that ongoing (albeit reduced) T cell immune activation may occur in the presence of ARV. Further longitudinal studies are needed to closely monitor immune activation during ARV treatment. This study highlighted an association of TB disease with immune activation in HIV infection, the importance of T-cell activation in HIV pathogenesis and its impact on ARV treatment. Further studies are needed to identify causative factors that may lead to a persistent immune activation status during ARV treatment, and how TB coinfection confounds normal responses to ARV. / AFRIKAANSE OPSOMMING: In 2007 was ongeveer 2.1 miljoen sterftes wêreldwyd veroorsaak deur VIGS; ongeveer 70% in Sub-Sahara Afrika. CD4 T selle is die hoof teiken van MIV, aangesien dit die primêre CD4 reseptor, sowel as een of beide van die vernaamste chemokien koreseptore CCR5 en CXCR4 vrystel. Hierdie koreseptore speel ‘n prominente rol wanneer die MIV die sel binnedring, asook tydens MIV oordrag en verloop van die siekte. Dit word ook deur verskillende fraksies van CD4 T selle vrygestel. Gelyktydige TB infeksie mag immuunaktivering in vivo verhoog en dus die siekeproses versnel. MIV het ‘n groot uitdaging geword in die beheer van TB in Afrika. Bekendstelling van HAART het die ontwikkeling van VIGS vertraag, asook die risiko van verdere morbiditeit en mortaliteit. HAART veroorsaak ‘n vinnige afname in virale lading ‘n toename in CD4 telling, hoewel die spesifieke invloed van HAART op die regulering van koreseptor vrystelling, immuunaktivering en verspreiding van CD4 fraksies in MIV en MIV/TB infeksies nog onduidelik is. Hierdie studie het gepoog om koreseptor vrystelling, immuunaktiveringstatus en die verspreiding van CD4 subpopulasies in pasiënte met MIV en MIV/TB voor en na ARV behandeling te ondersoek. ‘n Totaal van 137 Suid-Afrikaanse individue is ondersoek en die studiegroep het bestaan uit 15 normale persone (gesonde subgroep), 10 pasiënte met aktiewe pulmonale TB (PTB subgroup), 33 MIV positiewe pasiënte sonder PTB (MIV subgroep), 23 MIV positiewe pasiënte met aktiewe PTB (MIV/PTB subgroep), 36 MIV positiewe pasiënte op ARV (MIV op ARV subgroep) en 20 MIV positiewe pasiënte met aktiewe PTB op ARV (MIV/PTB op ARV subgroep). Absolute CD4 telling en virale ladings was bepaal vir alle deelnemers. Vars geïsoleerde perifere bloed mononukleêre selle is geklassifiseer deur middel van vloeisitometrie as die volgende CD4 T limfosiet subgroepe: naïewe selle (CD45+, CD27+), effektor geheueselle (CD45-, CD27-), sentrale geheueselle (CD45-, CD27+), en effektor selle (CD45+, CD27-). Koreseptor vrystelling en aktivering was beoordeel volgens CCR5, CXCR4 en CD38 vrystelling op CD4 T sel subgroepe. HIV, TB en MIV/TB ko-infeksie is geassosieer met ‘n afname in die persentasie CCR5+ T selle, vergeleke met gesonde kontroles, waar die MIV/TB subgroep die grootste afname getoon het. In onbehandelde pasiënte het die CD4 T selle verhoogde vrystelling van CCR5 en CD38 op die oppervlakte getoon en dit is bevestig deur die gemiddelde fluoresserende vii intensiteit in die MIV/TB subgroep vergeleke met die subgroep met slegs MIV. Die MIV/TB subgroep het verder ook ‘n verhoogde persentasie totale geheue T selle getoon vergeleke met die MIV subgroep. Die persentasie naïewe T selle was egter verlaag in beide die MIV en MIV/TB subgroepe vergeleke met normale kontroles. MIV pasiënte wat langer as 6 maande op ARV behandeling was in beide die MIV en MIV/TB subgroepe, het ‘n verlaagde vrystelling van CCR5 en CD38 op die oppervlakte van die CD4 selle getoon. ‘n Verhoogde persentasie naïewe T selle het in die MIV subgroep voorgekom, maar nie in die MIV/TB subgroup nie. ‘n Soortgelyke tendens is gevind waar die persentasie totale geheueselle verlaag was in die MIV subgroep, maar nie in die MIV/TB subgroep nie. ‘n Positiewe korrelasie is gevind tussen CCR5 en CD38 vrystelling, asook CXCR4 en CD38 vrystelling (Spearman korrelasie koëffisiënt: r=0.59, p<0.001 en r=0.55, p<0.001 onderskeidelik). Verder het die plasma virale lading ‘n positiewe assosiasie getoon met CD38 vrystelling (r=0.31, p<0.001) en die persentasie geaktiveerde CCR5+ vrystellende CD4 T selle met virale lading (r=0.31, p<0.001). Die persentasie naïewe CD4 T selle het ‘n positiewe assosiasie getoon met CD4 telling (r=0.60, p<0.001) en ‘n negatiewe korrelasie met virale lading (r=-0.42, p<0.001). Volgens hierdie resultate vererger TB ko-infeksie sekere aspekte van die disregulasie van CD4 T selhomeostase en aktivering as gevolg van MIV infeksie. Verder kon ‘n ARVgeassosieerde afname in koreseptor vrystelling, immuunaktivering en normalisering van CD4 T sel fraksies bespeur word in die MIV subgroep, maar nie in die MIV/TB subgroep nie. Ten spyte van virale onderdrukking veroorsaak deur ARV behandeling, het die afname in die immuunmerker CD38 en koreseptor CCR5, toename in die persentasie naïewe CD4 selle en afname in totale geheue CD4 T selle nie die vlakke van die normale kontrolegroep bereik nie. Dit is moontlik dat volgehoue verlaagde T sel immuunaktivering nog steeds mag plaasvind in die teenwoordigheid van ARV. Verdere longitudinale studies is nodig om immuunaktivering tydens ARV behandeling te monitor. Hierdie studie het die belangrikheid van T sel aktivering in MIV patogenese en dit impak daarvan op ARV behandeling beklemtoon. Verdere studies is nodig om moontlike oorsake of bydraende faktore te identifiseer wat tot volgehoue immuunaktivering tydens ARV behandeling kan lei, asook tot mate waartoe TB ko-infeksie kan inmeng met die normale werking van ARV behandeling.

Receptor proteins on the surfaces of cells equip them to communicate with each other and to sense and interact with their environment. One receptor family, the αβ T-cell receptors (TCRs), allow T lymphocytes to detect and respond to pathogens via interactions with antigen-presenting major histocompatibility complex (MHC) molecules on target cells. A degree of TCR cross-reactivity (e.g. through structural similarity between peptide-MHC (pMHC) complexes) is essential to account for all possible pathogens, but can also lead to the misinterpretation of self antigens as foreign, and thereby elicit an autoimmune response, resulting in diseases such as multiple sclerosis (MS). Structural studies of pMHC and TCR-pMHC complexes have been key to developing of an understanding of the molecular basis of TCR cross reactivity, and the first strand of this thesis describes attempts to express and purify a highly cross-reactive MS patient-derived TCR for structural characterisation. The formation, purification and crystallisation of a TCR-self pMHC complex including another autoreactive TCR is also described. Another family of receptors, the fibronectin leucine-rich transmembrane proteins (FLRTs), has been implicated in roles in embryonic development including cell sorting and adhesion. In the second strand of this thesis, the nature of homotypic interactions between FLRTs, which may underlie adhesion between FLRT transfected cells, is investigated. Biophysical analyses demonstrate that these interactions may be mediated by the extracellular leucine-rich repeat (LRR) domain, and crystal structures of all three FLRT LRR domains suggest how interactions between them may underlie FLRT self-association at the cell surface. Residues which contribute to these interactions are conserved across different members of the FLRT family and different species. These findings confirm that FLRTs induce homotypic cell-cell adhesion, and suggest that this behaviour is mediated by self association at the cell surface via the LRR domain.

Introdução: O timo é um órgão linfóide especializado responsável por criar um microambiente propício para a diferenciação e maturação de células T. A quantificação dos níveis de TRECs (círculos excisados durante o rearranjo do TCR) vem sendo utilizada para avaliação e quantificação da função tímica em células do sangue periférico. Estudos que tenham realizado a quantificação dos níveis de TREC em crianças e adolescentes saudáveis brasileiros são escassos na literatura. Objetivo: No presente estudo, avaliamos os níveis de TREC em células mononucleares do sangue periférico associado à análise da expressão de linfócitos T CD3, CD4, CD8, de linfócitos T ativados co-expressando CD38 e HLA-DR e linfócitos T reguladores co-expressando CD25 e Foxp3 em crianças e adolescentes saudáveis em diferentes faixas etárias. Material e métodos: A quantificação dos níveis de sjTREC de DNA genômico em células mononucleares de sangue periférico foi realizada pelo método de PCR quantitativo em tempo real. A concentração de TREC foi expressa em número de cópias de TREC/?g de DNA. A análise da expressão dos marcadores CD3, CD4, CD8, CD38, HLA-DR, CD25 e Foxp3 foi realizada por citometria de fluxo. Resultados: Foram avaliadas 95 crianças e adolescentes, 46 do sexo feminino e 49 do sexo masculino com idades entre 1 e 18 anos. A média do número de cópias de TREC foi de 8,9 ± 3,6 x 104 TRECs/?g DNA. Não encontramos diferença significativa nos valores de TREC entre o sexo feminino e masculino (8,2 ± 3,3 x 104 TRECs/?g DNA vs 9,5 ± 3,9 x 104 TRECs/?g DNA, respectivamente, p = 0,085). Houve uma correlação inversa e significativa entre idade e os níveis de TREC (r = -0,846; p < 0,001), refletindo a já conhecida queda da função tímica com a idade. A expressão de CD3, CD4 e CD8 variou de 45 a 62%, 60 a 65% e 14 a 26%, respectivamente. Não houve correlação significativa entre a proporção de CD3, CD4 e CD8 e a idade dos indivíduos avaliados. Houve uma correlação inversa fraca entre os níveis de linfócitos T ativados expressando CD4+CD38+HLA-DR+ e idade (r = -0,286; p = 0,023), porém não encontramos correlação entre linfócitos T CD8+CD38+HLA-DR+ e idade (r = -0,229; p = 0,072). Houve uma correlação inversa entre os valores de linfócitos T expressando CD4+CD25+Foxp3+ e idade (r = -0,467; p = 0,04). Adicionalmente, encontramos correlação positiva entre a expressão de linfócitos T reguladores e o número de cópias de TREC/?g DNA (r = 0,529; p = 0,02). Conclusão: No presente estudo encontramos uma queda da função tímica com a idade, avaliada pela quantificação dos níveis de TREC em sangue periférico, que se correlacionaram positivamente com a proporção de células T reguladoras em crianças e adolescentes saudáveis. / Introduction: The thymus is a specialized lymphoid organ that is responsible for providing an exclusive microenvironment for T cell maturation and differentiation. The quantification of TREC (T cell receptor excision circle) has been widely used to evaluate and quantify thymic function in peripheral blood cells. Studies that evaluated TREC levels in Brazilian healthy children and adolescents are scarce in the literature. Objective: In the present study, we evaluated the TREC levels in peripheral mononuclear cells associated with the analysis of CD3, CD4, CD8 T cell markers, and activated T cells coexpressing CD38 and HLA-DR, and regulatory T cells co-expressing CD25 and Foxp3 in healthy children and adolescents in different age groups. Material and Methods: The quantification of sjTREC levels in genomic DNA of peripheral blood mononuclear cells (PBMC) was performed by real time quantitative PCR. TREC concentration was expressed as the number of copies of TREC/?g DNA. The analysis of CD3, CD4, CD8, CD38, HLA-DR, CD25 and Foxp3 expression was performed using flow cytometry methodology. Results: Ninety-five healthy children and adolescents were analyzed, 46 girls and 49 boys. The mean TREC count in PBMC in all individuals was 8.9 ± 3.6 x 104 TRECs/?g DNA. There was no significant difference in the number of TRECs/?g DNA between female and male gender (8.2 ± 3.3 x 104 TRECs/?g DNA vs 9.5 ± 3.9 x 104 TRECs/?g DNA, p = 0.085). There was an inverse correlation between age and TREC counts in PBMC in the 95 individuals (r = -0.846, p < 0.001), reflecting the well-known decrease of thymic function that occurs with age. The expression of CD3, CD4 and CD8 surface markers ranged between 45-62%, 60-65% and 14- 26%, respectively. There was no significant correlation between CD3, CD4 and CD8 proportion and age. There was a weak correlation between activated T cells expressing CD4+CD38+HLA-DR+ and age (r = -0.286; p = 0.023), however there was no significant correlation between T cells expressing CD8+CD38+HLA-DR+ and age (r = -0.229; p = 0.072). There was an inverse correlation between T cells expressing CD4+CD25+Foxp3+ and age (r = -0.467; p = 0.04). Additionally, we also found a positive correlation between CD4+CD25+Foxp3+ values and numbers of TREC/?g DNA in all studied individuals (r = 0.529, p = 0.02). Conclusion: In the present study we found a decrease in the thymic function with age, accessed by the quantification of the TREC level in peripheral blood, which was positively associated with the proportion of regulatory T cells.

Introdução: O timo é um órgão linfóide especializado responsável por criar um microambiente propício para a diferenciação e maturação de células T. A quantificação dos níveis de TRECs (círculos excisados durante o rearranjo do TCR) vem sendo utilizada para avaliação e quantificação da função tímica em células do sangue periférico. Estudos que tenham realizado a quantificação dos níveis de TREC em crianças e adolescentes saudáveis brasileiros são escassos na literatura. Objetivo: No presente estudo, avaliamos os níveis de TREC em células mononucleares do sangue periférico associado à análise da expressão de linfócitos T CD3, CD4, CD8, de linfócitos T ativados co-expressando CD38 e HLA-DR e linfócitos T reguladores co-expressando CD25 e Foxp3 em crianças e adolescentes saudáveis em diferentes faixas etárias. Material e métodos: A quantificação dos níveis de sjTREC de DNA genômico em células mononucleares de sangue periférico foi realizada pelo método de PCR quantitativo em tempo real. A concentração de TREC foi expressa em número de cópias de TREC/?g de DNA. A análise da expressão dos marcadores CD3, CD4, CD8, CD38, HLA-DR, CD25 e Foxp3 foi realizada por citometria de fluxo. Resultados: Foram avaliadas 95 crianças e adolescentes, 46 do sexo feminino e 49 do sexo masculino com idades entre 1 e 18 anos. A média do número de cópias de TREC foi de 8,9 ± 3,6 x 104 TRECs/?g DNA. Não encontramos diferença significativa nos valores de TREC entre o sexo feminino e masculino (8,2 ± 3,3 x 104 TRECs/?g DNA vs 9,5 ± 3,9 x 104 TRECs/?g DNA, respectivamente, p = 0,085). Houve uma correlação inversa e significativa entre idade e os níveis de TREC (r = -0,846; p < 0,001), refletindo a já conhecida queda da função tímica com a idade. A expressão de CD3, CD4 e CD8 variou de 45 a 62%, 60 a 65% e 14 a 26%, respectivamente. Não houve correlação significativa entre a proporção de CD3, CD4 e CD8 e a idade dos indivíduos avaliados. Houve uma correlação inversa fraca entre os níveis de linfócitos T ativados expressando CD4+CD38+HLA-DR+ e idade (r = -0,286; p = 0,023), porém não encontramos correlação entre linfócitos T CD8+CD38+HLA-DR+ e idade (r = -0,229; p = 0,072). Houve uma correlação inversa entre os valores de linfócitos T expressando CD4+CD25+Foxp3+ e idade (r = -0,467; p = 0,04). Adicionalmente, encontramos correlação positiva entre a expressão de linfócitos T reguladores e o número de cópias de TREC/?g DNA (r = 0,529; p = 0,02). Conclusão: No presente estudo encontramos uma queda da função tímica com a idade, avaliada pela quantificação dos níveis de TREC em sangue periférico, que se correlacionaram positivamente com a proporção de células T reguladoras em crianças e adolescentes saudáveis. / Introduction: The thymus is a specialized lymphoid organ that is responsible for providing an exclusive microenvironment for T cell maturation and differentiation. The quantification of TREC (T cell receptor excision circle) has been widely used to evaluate and quantify thymic function in peripheral blood cells. Studies that evaluated TREC levels in Brazilian healthy children and adolescents are scarce in the literature. Objective: In the present study, we evaluated the TREC levels in peripheral mononuclear cells associated with the analysis of CD3, CD4, CD8 T cell markers, and activated T cells coexpressing CD38 and HLA-DR, and regulatory T cells co-expressing CD25 and Foxp3 in healthy children and adolescents in different age groups. Material and Methods: The quantification of sjTREC levels in genomic DNA of peripheral blood mononuclear cells (PBMC) was performed by real time quantitative PCR. TREC concentration was expressed as the number of copies of TREC/?g DNA. The analysis of CD3, CD4, CD8, CD38, HLA-DR, CD25 and Foxp3 expression was performed using flow cytometry methodology. Results: Ninety-five healthy children and adolescents were analyzed, 46 girls and 49 boys. The mean TREC count in PBMC in all individuals was 8.9 ± 3.6 x 104 TRECs/?g DNA. There was no significant difference in the number of TRECs/?g DNA between female and male gender (8.2 ± 3.3 x 104 TRECs/?g DNA vs 9.5 ± 3.9 x 104 TRECs/?g DNA, p = 0.085). There was an inverse correlation between age and TREC counts in PBMC in the 95 individuals (r = -0.846, p < 0.001), reflecting the well-known decrease of thymic function that occurs with age. The expression of CD3, CD4 and CD8 surface markers ranged between 45-62%, 60-65% and 14- 26%, respectively. There was no significant correlation between CD3, CD4 and CD8 proportion and age. There was a weak correlation between activated T cells expressing CD4+CD38+HLA-DR+ and age (r = -0.286; p = 0.023), however there was no significant correlation between T cells expressing CD8+CD38+HLA-DR+ and age (r = -0.229; p = 0.072). There was an inverse correlation between T cells expressing CD4+CD25+Foxp3+ and age (r = -0.467; p = 0.04). Additionally, we also found a positive correlation between CD4+CD25+Foxp3+ values and numbers of TREC/?g DNA in all studied individuals (r = 0.529, p = 0.02). Conclusion: In the present study we found a decrease in the thymic function with age, accessed by the quantification of the TREC level in peripheral blood, which was positively associated with the proportion of regulatory T cells.

Human cells from acute myeloid leukemia (AML) patients are frequently transplanted into immune-compromised mouse strains to provide an in vivo environment for studies on the biology of the disease. Since frequencies of leukemia re-initiating cells are low and a unique cell surface phenotype that includes all tumor re-initiating activity remains unknown, the underlying mechanisms leading to limitations in the xenotransplantation assay need to be understood and overcome to obtain robust engraftment of AML-containing samples. We report here that in the NSG xenotransplantation assay, the large majority of mononucleated cells from patients with AML fail to establish a reproducible myeloid engraftment despite high donor chimerism. Instead, donor-derived cells mainly consist of polyclonal disease-unrelated expanded co-transplanted human T lymphocytes that induce xenogeneic graft versus host disease and mask the engraftment of human AML in mice. Engraftment of mainly myeloid cell types can be enforced by the prevention of T cell expansion through the depletion of lymphocytes from the graft prior transplantation.