Esta tese tem por objetivo investigar como o letramento em língua estrangeira (LE) pode ser apoiado pelo uso de um recurso digital passível de auxiliar os processos de leitura e produção textual. Assim, a presente pesquisa baseia-se nos estudos de Feldman e Sanger (2006) acerca da mineração de textos e nas pesquisas de Black (2007, 2009) sobre a incorporação de um gênero textual característico da internet (fanfiction) na aprendizagem de línguas. Através da utilização de um recurso de mineração de texto (Sobek), a partir do qual ocorre a extração dos termos mais recorrentes em um texto, os participantes deste estudo criaram narrativas, em meio digital. Os doze alunos participantes da pesquisa utilizaram a ferramenta Sobek como mediadora da produção de histórias conhecidas como fanfictions, nas quais novas tramas são criadas a partir de elementos culturais já reconhecidos na mídia. Os informantes eram seis graduandos em Letras e seis alunos de um curso de extensão, ambos os grupos na Universidade Federal do Rio Grande do Sul (UFRGS). Na tarefa proposta, cada aprendiz leu uma fanfiction de sua escolha, publicada na web, e utilizou a ferramenta de mineração para formar grafos com os termos mais recorrentes da história. Durante tal processo, o aluno tinha oportunidade de fazer associações entre as expressões do texto, de modo a formar, na ferramenta Sobek, uma imagem em rede (grafo) que representasse termos recorrentes nesse gênero textual (tais como o uso de tempos verbais no passado e adjetivos para caracterizar personagens e contexto). Posteriormente, esse grafo foi repassado a um colega, que assim iniciou seu processo de composição com base nessa imagem representativa do texto. A partir da análise dos dados, observou-se que a utilização da ferramenta digital deu suporte à produção textual em LE, e sua subsequente prática de letramento, visto que os autores se apoiaram no recurso de mineração para criar suas narrativas fanfiction. / This doctoral thesis aims at investigating how literacy in a foreign language (FL) may be supported by the use of a digital resource which can help the processes of reading and writing. Thus, the present research is based on studies by Feldman and Sanger (2006) about text mining, and on research by Black (2007, 2009) about the incorporation of a textual genre characteristic of the Internet (fanfiction) in language learning. Through the use of a text mining resource (Sobek), which promotes the extraction of frequent terms present in a text, the participants of this study created narratives, in digital media. The twelve students who participated in the research used the tool Sobek to mediate the production of stories known as fanfictions, in which new plots are created from cultural elements already recognized in the media. The participants were six undergraduate students of Languages and six students who were part of an extension course, both groups at the Federal University of Rio Grande do Sul (UFRGS). In the proposed task, each student read a fanfiction of his/her choice, which was published on a website, and used the mining tool to develop graphs with the recurrent terms found in the story. During this process, the student had the opportunity to make associations between expressions from the text, using the software Sobek, so as to form an image (graph) that represented terms used in this textual genre (such as the use of verbal tenses in the past and adjectives to describe characters and context). Later, this graph was forwarded to a peer, who then began his/her writing process based on this picture originated from a text. From the data analysis, it was observed that the use of a digital tool supported the text production in the FL, and its following practice of literacy, as the authors relied on the mining resource to create their fanfictions.

abstract: Understanding changes and trends in biomedical knowledge is crucial for individuals, groups, and institutions as biomedicine improves people’s lives, supports national economies, and facilitates innovation. However, as knowledge changes what evidence illustrates knowledge changes? In the case of microbiome, a multi-dimensional concept from biomedicine, there are significant increases in publications, citations, funding, collaborations, and other explanatory variables or contextual factors. What is observed in the microbiome, or any historical evolution of a scientific field or scientific knowledge, is that these changes are related to changes in knowledge, but what is not understood is how to measure and track changes in knowledge. This investigation highlights how contextual factors from the language and social context of the microbiome are related to changes in the usage, meaning, and scientific knowledge on the microbiome. Two interconnected studies integrating qualitative and quantitative evidence examine the variation and change of the microbiome evidence are presented. First, the concepts microbiome, metagenome, and metabolome are compared to determine the boundaries of the microbiome concept in relation to other concepts where the conceptual boundaries have been cited as overlapping. A collection of publications for each concept or corpus is presented, with a focus on how to create, collect, curate, and analyze large data collections. This study concludes with suggestions on how to analyze biomedical concepts using a hybrid approach that combines results from the larger language context and individual words. Second, the results of a systematic review that describes the variation and change of microbiome research, funding, and knowledge are examined. A corpus of approximately 28,000 articles on the microbiome are characterized, and a spectrum of microbiome interpretations are suggested based on differences related to context. The collective results suggest the microbiome is a separate concept from the metagenome and metabolome, and the variation and change to the microbiome concept was influenced by contextual factors. These results provide insight into how concepts with extensive resources behave within biomedicine and suggest the microbiome is possibly representative of conceptual change or a preview of new dynamics within science that are expected in the future. / Dissertation/Thesis / Doctoral Dissertation Biology 2018

Companies continually seek to improve their business model through feedback and customer satisfaction surveys. Social media provides additional opportunities for this advanced exploration into the mind of the customer. By extracting customer feedback from social media platforms, companies may increase the sample size of their feedback and remove bias often found in questionnaires, resulting in better informed decision making. However, simply using personnel to analyze the thousands of relative social media content is financially expensive and time consuming. Thus, our study aims to establish a method to extract business intelligence from social media content by structuralizing opinionated textual data using text mining and classifying these reviews by the degree of customer satisfaction. By quantifying textual reviews, companies may perform statistical analysis to extract insight from the data as well as effectively address concerns. Specifically, we analyzed a subset of 56,000 Yelp reviews on fast food restaurants and attempt to predict a quantitative value reflecting the overall opinion of each review. We compare the use of two different predictive modeling techniques, bagged Decision Trees and Random Forest Classifiers. In order to simplify the problem, we train our model to accurately classify strongly negative and strongly positive reviews (1 and 5 stars) reviews. In addition, we identify drivers behind strongly positive or negative reviews allowing businesses to understand their strengths and weaknesses. This method provides companies an efficient and cost-effective method to process and understand customer satisfaction as it is discussed on social media.

How do we model the meaning of words? In domains like information retrieval, words have classically been modeled as discrete entities using 1-of-n encoding, a representation that elides most of a word's syntactic and semantic structure. Recent research, however, has begun exploring more robust representations called word embeddings. Embeddings model words as a parameterized function mapping into an n-dimensional continuous space and implicitly encode a number of interesting semantic and syntactic properties. This dissertation examines two application areas where existing, state-of-the-art terminology modeling improves the task of information extraction (IE) -- the process of transforming unstructured data into structured form. We show that a large amount of word meaning can be learned directly from very large document collections. First, we explore the feasibility of mining sexual health behavior data directly from the unstructured text of online “hookup" requests. The Internet has fundamentally changed how individuals locate sexual partners. The rise of dating websites, location-aware smartphone apps like Grindr and Tinder that facilitate casual sexual encounters (“hookups"), as well as changing trends in sexual health practices all speak to the shifting cultural dynamics surrounding sex in the digital age. These shifts also coincide with an increase in the incidence rate of sexually transmitted infections (STIs) in subpopulations such as young adults, racial and ethnic minorities, and men who have sex with men (MSM). The reasons for these increases and their possible connections to Internet cultural dynamics are not completely understood. What is apparent, however, is that sexual encounters negotiated online complicate many traditional public health intervention strategies such as contact tracing and partner notification. These circumstances underline the need to examine online sexual communities using computational tools and techniques -- as is done with other social networks -- to provide new insight and direction for public health surveillance and intervention programs. One of the central challenges in this task is constructing lexical resources that reflect how people actually discuss and negotiate sex online. Using a 2.5-year collection of over 130 million Craigslist ads (a large venue for MSM casual sexual encounters), we discuss computational methods for automatically learning terminology characterizing risk behaviors in the MSM community. These approaches range from keyword-based dictionaries and topic modeling to semi-supervised methods using word embeddings for query expansion and sequence labeling. These methods allow us to gather information similar (in part) to the types of questions asked in public health risk assessment surveys, but automatically aggregated directly from communities of interest, in near real-time, and at geographically high-resolution. We then address the methodological limitations of this work, as well as the fundamental validation challenges posed by the lack of large-scale sexual sexual behavior survey data and limited availability of STI surveillance data. Finally, leveraging work on terminology modeling in Craigslist, we present new research exploring representation learning using 7 years of University of Iowa Hospitals and Clinics (UIHC) clinical notes. Using medication names as an example, we show that modeling a low-dimensional representation of a medication's neighboring words, i.e., a word embedding, encodes a large amount of non-obvious semantic information. Embeddings, for example, implicitly capture a large degree of the hierarchical structure of drug families as well as encode relational attributes of words, such as generic and brand names of medications. These representations -- learned in a completely unsupervised fashion -- can then be used as features in other machine learning tasks. We show that incorporating clinical word embeddings in a benchmark classification task of medication labeling leads to a 5.4% increase in F1-score over a baseline of random initialization and a 1.9% over just using non-UIHC training data. This research suggests clinical word embeddings could be shared for use in other institutions and other IE tasks.

Data from social media platforms are being actively mined for trends and patterns of interests. Problems such as sentiment analysis and prediction of election outcomes have become tremendously popular due to the unprecedented availability of social interactivity data of different types. In this thesis we address two problems that have been relatively unexplored. The first problem relates to mining beliefs, in particular health beliefs, and their surveillance using social media. The second problem relates to investigation of factors associated with engagement of U.S. Federal Health Agencies via Twitter and Facebook. In addressing the first problem we propose a novel computational framework for belief surveillance. This framework can be used for 1) surveillance of any given belief in the form of a probe, and 2) automatically harvesting health-related probes. We present our estimates of support, opposition and doubt for these probes some of which represent true information, in the sense that they are supported by scientific evidence, others represent false information and the remaining represent debatable propositions. We show for example that the levels of support in false and debatable probes are surprisingly high. We also study the scientific novelty of these probes and find that some of the harvested probes with sparse scientific evidence may indicate novel hypothesis. We also show the suitability of off-the-shelf classifiers for belief surveillance. We find these classifiers are quite generalizable and can be used for classifying newly harvested probes. Finally, we show the ability of harvesting and tracking probes over time. Although our work is focused in health care, the approach is broadly applicable to other domains as well. For the second problem, our specific goals are to study factors associated with the amount and duration of engagement of organizations. We use negative binomial hurdle regression models and Cox proportional hazards survival models for these. For Twitter, the hurdle analysis shows that presence of user-mention is positively associated with the amount of engagement while negative sentiment has inverse association. Content of tweets is also equally important for engagement. The survival analyses indicate that engagement duration is positively associated with follower count. For Facebook, both hurdle and survival analyses show that number of page likes and positive sentiment are correlated with higher and prolonged engagement while few content types are negatively correlated with engagement. We also find patterns of engagement that are consistent across Twitter and Facebook.

The primary research aim of this dissertation is to identify the strategies that best meet the information retrieval needs as expressed in the "e-discovery" scenario. This task calls for a high-recall system that, in response to a request for all available relevant documents to a legal complaint, effectively prioritizes documents from an enterprise document collection in order of likelihood of relevance. High recall information retrieval strategies, such as those employed for e-discovery and patent or medical literature searches, reflect high costs when relevant documents are missed, but they also carry high document review costs. Our approaches parallel the evaluation opportunities afforded by the TREC Legal Track. Within the ad hoc framework, we propose an approach that includes query field selection, techniques for mitigating OCR error, term weighting strategies, query language reduction, pseudo-relevance feedback using document metadata and terms extracted from documents, merging result sets, and biasing results to favor documents responsive to lawyer-negotiated queries. We conduct several experiments to identify effective parameters for each of these strategies. Within the relevance feedback framework, we use an active learning approach informed by signals from collected prior relevance judgments and ranking data. We train a classifier to prioritize the unjudged documents retrieved using different ad hoc information retrieval techniques applied to the same topic. We demonstrate significant improvements over heuristic rank aggregation strategies when choosing from a relatively small pool of documents. With a larger pool of documents, we validate the effectiveness of the merging strategy as a means to increase recall, but that sparseness of judgment data prevents effective ranking by the classifier-based ranker. We conclude our research by optimizing the classifier-based ranker and applying it to other high recall datasets. Our concluding experiments consider the potential benefits to be derived by modifying the merged runs using methods derived from social choice models. We find that this technique, Local Kemenization, is hampered by the large number of documents and the minimal number of contributing result sets to the ranked list. This two-stage approach to high-recall information retrieval tasks continues to offer a rich set of research questions for future research.

This thesis presents novel methods for creating and improving hierarchical hidden Markov models. The work centers around transforming a traditional tree structured hierarchical hidden Markov model (HHMM) into an equivalent model that reuses repeated sub-trees. This process temporarily breaks the tree structure constraint in order to leverage the benefits of combining repeated sub-trees. These benefits include lowered cost of testing and an increased accuracy of the final model-thus providing the model with greater performance. The result is called a merged and simplified hierarchical hidden Markov model (MSHHMM). The thesis goes on to detail four techniques for improving the performance of MSHHMMs when applied to information extraction tasks, in terms of accuracy and computational cost. Briefly, these techniques are: a new formula for calculating the approximate probability of previously unseen events; pattern generalisation to transform observations, thus increasing testing speed and prediction accuracy; restructuring states to focus on state transitions; and an automated flattening technique for reducing the complexity of HHMMs. The basic model and four improvements are evaluated by applying them to the well-known information extraction tasks of Reference Tagging and Text Chunking. In both tasks, MSHHMMs show consistently good performance across varying sizes of training data. In the case of Reference Tagging, the accuracy of the MSHHMM is comparable to other methods. However, when the volume of training data is limited, MSHHMMs maintain high accuracy whereas other methods show a significant decrease. These accuracy gains were achieved without any significant increase in processing time. For the Text Chunking task the accuracy of the MSHHMM was again comparable to other methods. However, the other methods incurred much higher processing delays compared to the MSHHMM. The results of these practical experiments demonstrate the benefits of the new method-increased accuracy, lower computation costs, and better performance.

The advance in technologies such as massive storage devices and high speed internet has led to an enormous increase in the volume of available documents in electronic form. These documents represent information in a complex and rich manner that cannot be analysed using conventional statistical data mining methods. Consequently, text mining is developed as a growing new technology for discovering knowledge from textual data and managing textual information. Processing and analysing textual information can potentially obtain valuable and important information, yet these tasks also requires enormous amount of computational resources due to the sheer size of the data available. Therefore, it is important to enhance the existing methodologies to achieve better scalability, efficiency and accuracy. / The emerging Grid technology shows promising results in solving the problem of scalability by splitting the works from text clustering algorithms into a number of jobs, each to be executed separately and simultaneously on different computing resources. That allows for a substantial decrease in the processing time and maintaining the similar level of quality at the same time. / To improve the quality of the text clustering results, a new document encoding method is introduced that takes into consideration of the semantic similarities of the words. In this way, documents that are similar in content will be more likely to be group together. / One of the ultimate goals of text mining is to help us to gain insights to the problem and to assist in the decision making process together with other source of information. Hence we tested the effectiveness of incorporating text mining method in the context of stock market prediction. This is achieved by integrating the outcomes obtained from text mining with the ones from data mining, which results in a more accurate forecast than using any single method.

<p>With the growth of information stored over Internet, especially in the biological field, and with discoveries being made daily in this domain, scientists are faced with an overwhelming amount of articles. Reading all published articles is a tedious and time-consuming process. Therefore a way to summarise the information in the articles is needed. A solution is the derivation of an ontology representing the knowledge enclosed in the set of articles and allowing to browse through them. </p><p>In this thesis we present the tool Ontolo, which allows to build an initial ontology of a domain by inserting a set of articles related to that domain in the system. The quality of the ontology construction has been tested by comparing our ontology results for keywords to the ones provided by the Gene Ontology for the same keywords. </p><p>The obtained results are quite promising for a first prototype of the system as it finds many common terms on both ontologies for justa few hundred of inserted articles.</p>

本研究以一個食譜分享社群網站為研究對象，針對網站上所提供的食譜建立了運用 kNN 分群演算法的自動分群機制，並利用該網站上使用者的使用行為進行分群後群集的特徵描述參考。 本研究以三個階段建立了一針對食譜領域進行自動分群的資訊系統。第一階段為資料處理，在取得食譜網站上所提供的食譜資料後，雖然已經有相對結構化的格式可直接進行分群運算，然而由使用者所輸入的內容，仍有錯別字、贅詞、與食譜本身直接關連性不高等情形，因此必須進行處理。第二階段為資料分群，利用文字探勘進行內容特徵值的萃取，接著再以資料探勘的技術進行分群，分群的結果將會依群內的特徵、群間的相似度作為分群品質的主要指標。第三階段則為群集特徵分析，利用網站上使用者收藏食譜並加以分類的行為，運用統計的方式找出該群集的可能分類名稱。 本研究實際以 500 篇食譜進行分群實驗，在最佳的一次分群結果中，可得到 10 個食譜群集、平均群內相似度為 0.4482，每個群集可觀察出明顯的相似特徵，並且可藉由網站上使用者的收藏行為，標註出其群集特徵，例如湯品、甜點、麵包、中式料理等類別。 由於網站依照schema.org 所提供的食譜格式標準，針對網站上每一篇食譜內容進行了內容欄位的標記，本研究所實作之食譜分群機制，未來亦可運用在其他同樣採用 schema.org 所提供標準之同類型網站。