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The objective of this research was the development of an efficient method for the preparation of silver-polymer nanocomposites containing finely dispersed silver nanoparticles. The surface of nanosilver was functionalized by thiolation with 2-aminoethanethiol. Amino-modified nanosilver was covalently bonded to polyacrylic acid, biodegradable polymers like acid terminated polylactic acid, ester terminated poly(DL-lactide-co-glycolide) and acid terminated poly(DL lactide-co-glycolide) in the presence of diisopropylcarbodiimide by carbodiimide method. Esterification of the carboxyl groups of Ag-polyacrylic acid by hydrochloric acid in methanol resulted in the formation of a stable colloidal dispersion of Ag nanoparticles in the polymer matrix. It was observed that not just acid terminated polymers but also ester terminated polymers could react with functionalized nanosilver. This unusual reaction was due to the aminolysis of the ester bond in the polymer chain by the surface amino groups. Silver-polymer nanocomposites obtained with acid terminated polylactic acid and poly(DL-lactide-co-glycolide) contained highly dispersed nanosilver in the polymer matrix in comparison with the ester terminated poly(DL-lactide-co-glycolide). Chemical and structural characteristics of the obtained materials were studied by instrumental methods. Attained biodegradable materials confirmed X-ray contrast and bactericidal properties, which could be eventually used for biomedical applications.

The presence and synthesis of transfer RNA (tRNA) is highly conserved in all organisms and a lot of genetic material is dedicated to its synthesis. tRNA contains a large number of modified nucleosides and several diverse functions have been found but much about their function is still unknown. By using a novel frameshifting system to select for tRNA modification mutants, new mutations were isolated and subsequently analyzed. This thesis examines the synthesis and function of a subset of tRNA modifications that have a sulfur (thio) -group as part of the modification. The isc operon encodes for proteins synthesizing iron sulfur centers ([Fe-S]) that are a part of the active site of many key enzymes in the cell and the thiolated nucleosides are dependant on a functional iron sulfur gene (iscS) for their synthesis. By studying thiolated tRNA it is not only possible to learn more about the synthesis of the modifications themselves, but also about the synthesis of [Fe-S] clusters. Based on an analysis of mutations in three of the isc operon genes (iscS, iscU, and iscA), a two-model pathway is proposed for the synthesis of Salmonella enterica Serovar Typhimurium thiolated tRNA modifications. The interactions of IscS with other proteins in the tRNA modification thiolation pathways suggest a more complex sulfur relay than had previously been envisioned. Some of the specificities and the effect of an iscA mutant on the levels of tRNA modifications lead to an examination of the role of IscA in [Fe-S] formation and its importance for tRNA modifications.

This thesis addresses several aspects of mitochondrial iron sulfur (Fe-S) cluster biogenesis and mitochondrial tRNA import and modifications in Trypanosoma brucei. Using RNA interference it uncovers essential role of Fe-S cluster assembly in tRNA(s) thiolation in both the cytosol and the mitochondrion of T. brucei. Further, this thesis describes the role of modifications in tRNA editing and in mitochondrial import of tRNAs. Finally, it provides evidence that in contrast to protein import, mitochondrial membrane potential is dispensable for import of tRNAs into the mitochondrion of T. brucei.

Silver-polymer composite material containing highly dispersed silver nanoparticles (AgNPs) of 20-100. nm diameter can be obtained from bare nanosilver. The synthesis consists of three steps. The first step is modification of AgNPs by 2-aminoethanethiol. Second, polyacrylic acid is bonded to the silver 2-aminoethanethiolate by the carbodiimide method. Then esterification of the remaining carboxyl groups of the product by methanol results in formation of a stable colloidal dispersion of AgNPs in the polymer matrix. The method allows obtaining of nanocomposites with silver contents up to 1.4. wt%.

Oral delivery of insulin used for the management of Type 1 Diabetes could be referred to as one of the major long term goals of diabetes research. However, the bioavailability of orally administered insulin is significantly compromised by enzymatic degradation in the GI tract and poor enteral absorption of the protein due to its macromolecular size and hydrophilicity. Nano-sized polymer-protein polyelectrolyte complexes (PECS) formed by electrostatic interactions between insulin and Polyallylamine-based polymers at pH 7.4 have been adapted to facilitate oral insulin delivery. Polyallylamine (15kDa) was quaternised by methylation of its primary amines using methyl iodide to yield quaternised Paa (QPaa). Average level of polymer quaternisation was determined by elemental analysis and was found to be 72 ± 2mol%. Subsequent thiolation of Paa and QPaa using two different thiolation procedures involving carbodiimide mediated conjugation to N-acetylcysteine (NAC) and modification of the polymers using 2-iminothiolane hydrochloride yielded their respective NAC and 4-thiobutylamidine (TBA) conjugates: Paa-NAC/QPaa-NAC and Paa-TBA/QPaa-TBA. Estimation of the free thiol content of these thiomers by iodometric titration showed that both Paa-NAC and QPaa-NAC displayed 60 ± 1.2 and 60 ± 4.3ìmol free thiol groups per gram polymer, while Paa-TBA and QPaa-TBA conjugates displayed 490 ± 18 and 440 ± 21ìmol free thiol groups per gram polymer respectively. Mixing optimal mass ratios of each polymer and insulin in Tris buffer at pH 7.4 resulted in the formation of soluble nanocomplexes. Complexes were characterised by transmittance measurements, particle size analysis, zeta potential, complexation efficiency, and transmission electron microscopy (TEM). Stable polymer-insulin complexes were observed to have hydrodynamic sizes between 50-200nm, positively charged zeta potential values ranging between 20-40mV and high insulin complexation efficiency (> 90%). Complexation of insulin with TBA conjugates however appeared to alter insulin conformation affecting the detection of complexed insulin by HPLC. TEM analysis revealed the formation of bilayered nanovessicles as well as conventional single-layered nanoparticles on complexation of insulin with QPaa and thiolated Paa/QPaa derivatives. In-vitro assessments of enzyme-protective effect of QPaa, Paa-NAC and QPaa-NAC insulin complexes showed that when compared to a free insulin control, all the aforementioned complexes could protect insulin from degradation by trypsin and á-chymotrypsin, but not from pepsin. In-vitro mucin adsorption assays showed that all polymers exhibited a similar mucoadhesive profile with their corresponding insulin PEC, with thiolated Paa derivatives adsorbing >20% more mucin than Paa. Thiolation of QPaa did not result in a noticeable improvement in its mucoadhesive capacity indicating that polymer-mucin thiol-disulphide interactions may be hindered by the presence of quaternary groups. The IC50 of each polymer was determined by MTT assays carried out on Caco-2 cells with or without the inclusion of a 24-hour cell recovery period. An MTT assay conducted without a recovery period indicated that quaternisation of Paa was associated with a 6-fold improvement in its IC50; also cells subjected to a 24-hour recovery period following treatment with QPaa (0.001-4mgml-1) showed no signs of toxicity. Thiolation of Paa resulted in slight (≤ 2 fold) improvements in IC50, while thiolation of QPaa resulted in a decrease in IC50 values obtained both with and without a cell recovery period. Each polymer was subsequently labelled with rhodamine B isothiocyanate (RBITC) and complexed with fluorescein isothiocyanate (FITC)-insulin. Monitoring uptake of these complexes by Caco-2 cells using fluorescence microscopy with DAPI staining indicated that uptake of QPaa and QPaa-TBA complexes was mainly intracellular being localised within the perinuclear area of cells highlighted by DAPI. Hence, intracellular uptake of PECS by Caco-2 cells was enhanced by Paa quaternisation and TBA-based thiolation of QPaa.

Studies of ribosomal reading frame maintenance are often based on frameshift mutation suppression experiments. In this thesis, suppression of a frameshift mutation in Salmonella enterica serovar Typhimurium by a tRNA and a ribosomal protein are described. The +1 frameshift mutation hisC3072 (that contains an extra G in a run of Gs) is corrected by mutations in the argU gene coding for the minor tRNAArgmnm5UCU. The altered tRNAArgmnm5UCU has a decreased stability and reduced aminoacylation due to changed secondary and/or tertiary structure. Protein sequencing revealed that during the translation of the GAA-AGA frameshifting site the altered tRNAArgmnm5UCU reads the AGA codon inefficiently. This induces a ribosomal pause, allowing the tRNAGlumnm5s2UUC residing in the ribosomal P-site to slip forward one nucleotide. The same frameshift mutation (hisC3072) was also suppressed by defects in the large ribosomal subunit protein L9. Single base substitutions, truncations, and absence of this protein induced ribosome slippage. Mutated ribosome could shift to the overlapping codon in the +1 frame, or bypass to a codon further downstream in the +1 frame. The signal for stimulation of slippage and function of L9 needs to be investigated. During the search for suppressors of the hisD3749 frameshift mutation, a spontaneous mutant was isolated in the iscU gene that contained greatly decreased levels of the thiolated tRNA modifications ms2io6A and s2C. The iscU gene belongs to the iscR-iscSUA-hscBA-fdx operon coding for proteins involved in the assembly of [Fe-S] clusters. As has been shown earlier, IscS influences the synthesis of all thiolated nucleosides in tRNA by mobilizing sulfur from cysteine. In this thesis, it is demonstrated that IscU, HscA, and Fdx proteins are required for the synthesis of the tRNA modifications ms2io6A and s2C but are dispensable for the synthesis of s4U and (c)mnm5s2U. Based on these results it is proposed that two distinct pathways exist in the formation of thiolated nucleosides in tRNA: one is an [Fe-S] cluster-dependent pathway for the synthesis of ms2io6A and s2C and the other is an [Fe-S] cluster-independent pathway for the synthesis of s4U and (c)mnm5s2U. MiaB is a [Fe-S] protein required for the introduction of sulfur in ms2io6A. TtcA is proposed to be involved in the synthesis of s2C. This protein contains a CXXC conserved motif essential for cytidine thiolation that, together with an additional CXXC motif in the C-terminus may serve as an [Fe-S] cluster ligation site.

Les vésicules extracellulaires (VEs) sont des vésicules membranaires de taille majoritairement submicrométrique présentes dans les fluides biologiques et émises par les cellules en réponse à divers stimuli. Les VEs sont impliquées dans de nombreux phénomènes physiologiques mais également dans des pathologies telles que cancers ou maladies cardiovasculaires. Elles pourraient donc être utilisées comme biomarqueurs de ces pathologies. Bien que les VEs soient aujourd’hui largement étudiées, nos connaissances sur le sujet demeurent limitées. Ceci est principalement dû aux difficultés de caractérisation des VEs et à l’absence de standardisation de leurs méthodes d’étude et d’isolation. La première partie de mon travail de thèse a porté sur le développement d’une méthode de thiolation de protéines. Des anticorps ont été modifiés pour exposer des thiols et ont été conjugués à des nanoparticules d’or fonctionnalisées par des maléimides. Le couplage des anticorps thiolés aux nanoparticules d’or a été étudié de manière quantitative et des conditions de conjugaison optimales ont été déterminées par des approches biochimiques. La seconde partie de ce travail a concerné la caractérisation des VEs du plasma sanguin de sujets sains par microscopie électronique à transmission (MET). La morphologie, la taille et le phénotype des VEs ont été déterminés par cryo- MET combinée au marquage par des nanoparticules d’or conjuguées à des protéines. La quantification objective des VEs du plasma sanguin a été réalisée à l’aide d’une méthode originale de MET basée sur la sédimentation de VEs sur grille de MET. La troisième partie de cette étude a consisté à mettre au point une méthode d’isolation de VEs à l’aide de particules magnétiques conjuguées à de l’AnxA5. Des conditions permettant d’extraire la totalité des VEs exposant la phosphatidylsérine contenues dans un plasma sanguin ont été déterminées par cytométrie en flux (CF). Ce travail a permis d’apporter une caractérisation détaillée des VEs du plasma sanguin du sujet sain et peut servir de référence pour des études ultérieures concernant les VEs contenues dans des plasmas ou autres liquides biologiques pathologiques. / Extracellular vesicles (EVs) are submicrometric membrane vesicles found in body fluids and produced by cells in response to various stimuli. EVs are involved in numerous physiological processes but also in pathologies as cancers or cardiovascular diseases. Even if EVs are largely studied, our knowledge about them remains limited. This is mainly caused by the difficulties to characterize EVs and by the lack of standardized methods allowing their characterization. The first part of my PhD work focused on the development and optimization of a protein thiolation method. Antibodies modified to expose few thiols were conjugated to gold nanoparticles functionalized with maleimides. The binding of thiolated antibodies to gold nanoparticles was quantitatively studied and optimal conjugation conditions were determined using biochemical methods. The second part of my PhD work concerned the characterization of blood plasma EVs from healthy subjects using transmission electron microscopy (TEM). EVs morphology, size and phenotype were determined by cryo-TEM combined with labelling with protein-conjugated gold nanoparticles. The near-absolute quantification of blood plasma EVs was achieved using an original TEM method based on the direct sedimentation of EVs onto TEM grids. The third part of this study consisted in developing an EV isolation method using AnxA5-conjugated magnetic particles. Conditions allowing total extraction of blood plasma phosphatidylserine-exposing EVs were determined using flow cytometry (FC). This study presents a detailed characterization of blood plasma EVs from healthy subjects and can serve as a reference for future studies on EVs contained in pathological plasmas or other body fluids.

De nos jours, les matériaux carbonés macroscopiques font face à un nombre croissant d'applications en catalyse, soit en tant que supports, soit directement en tant que catalyseurs sans métal. Cependant, il reste difficile de développer un support de catalyseur hiérarchisé à base de. carbone ou un catalyseur utilisant un procédé de synthèse beaucoup plus simple. À la recherche de nouveaux matériaux carbonés structurés pour la catalyse hétérogène, nous avons exploré le potentiel du feutre de carbone / graphite du commerce (FC / FG). Le but du travail décrit dans cette thèse a été le développement du monolithe FG et FC en tant que catalyseur sans métal pour les réactions d’oxydation en phase gazeuse et en tant que support de catalyseur, notamment pour le palladium, pour les réactions d’hydrogénation en phase liquide, et leur rôle dans la performance de réaction de ces catalyseurs. En raison de leur surface de chimie inerte avec une mouillabilité inappropriée, une telle étude avait pour condition d'activer celles d'origine. Par conséquent, des FG et des FC modifiés bien arrondis ont été synthétisés avec des propriétés physico-chimiques adaptées par une série de procédés de traitement chimique, tels que l'oxydation, l'amination, la thiolation, le dopage à l'azote et au soufre. L’oxydation partielle du sulfure d’hydrogène en soufre élémentaire et l’hydrogénation sélective du cinnamaldéhyde α, β-insaturé, en tant que réactions sensibles à l’effet des propriétés du catalyseur sur l’activité et la sélectivité, combinées à des techniques de caractérisation, ont été choisis pour étudier l’effet de la matériaux carbonés sur le comportement catalytique. / Nowadays, macroscopic carbon materials are facing an increasing number of applications in catalysis, either as supports or directly as metal-free catalysts on their own. However, it is still challenging to develop hierarchical carbon-based catalyst support or catalyst using a much simple synthesis process. In the quest for novel structured carbon materials for heterogeneous catalysis we explored the potential of commercial carbon/graphite felt (CF/GF). The aim of the work described in this thesis has been the development of GF and CF monolith as metal-free catalyst for gas-phase oxidation reactions and as catalyst support, notably for palladium, for liquid-phase hydrogenation reactions, and their roles in the reaction performance of these catalysts. Due to their inert chemistry surface with inappropriate wettability, a prerequisite for such a study was to activate the origin ones. Therefore, well-rounded modified GFs and CFs were synthesized with tailored physic-chemical properties by a series of chemical treatment processes, such as oxidation, amination, thiolation, nitrogen- and sulfur-doping. The partial oxidation of hydrogen sulfide into elemental sulfur and selective hydrogenation of α, β-unsaturated cinnamaldehyde, as the sensitive test reactions to the influence of the catalyst properties on activity and selectivity, combined with characterization techniques, were chosen to investigate the effect of functionalized carbon materials on the catalytic behavior.