Neospora caninum é um protozoário Apicomplexa, parasita intracelular obrigatório que possui o cão como hospedeiro definitivo e principalmente os bovinos como hospedeiros intermediários, causando nos primeiros encefalopatia e nos últimos abortos com perda da fertilidade, o que acarreta prejuízos significativos na pecuária mundial. O parasita necessita multiplicar de modo intra-celular, utilizando a descarga de proteínas contidas em organelas filo-específicas, como as micronemas que liberam proteínas relacionadas a adesão e invasão ativa, além das roptrias e os grânulos densos. Este trabalho foi realizado sobre um tipo de proteína micronêmica denominada proteína Anônima Relacionada à Trombospondina (TRAP), relacionada à adesão e ligação com o motor intracelular, responsável pelo processo ativo de invasão. TRAP 1 já havia sido descrita pela literatura e o objetivo deste trabalho foi a caracterização molecular do até então desconhecido homólogo TRAP 2, com expressão de suas formas recombinantes e o uso de seus respectivos anti-soros para ensaios funcionais e localização da proteína nativa. Com base em banco dados de ESTs e genômicos de N. caninum e fazendo uso de RLM-RACE (Reação mediada por RNA ligase- amplificação rápida dos términos de cDNA-RNA,) foi possível a obtenção da sequencia completa do gene NcTrap 2, que possui quatro éxons separados por três íntrons. Sua forma protéica, como seu homológo, é formado por um peptídeo sinal, uma integrina, cinco trombospondinas, uma região transmembrana e a cauda citoplasmática. A integrina e as trombospondinas são motivos relacionados à adesão para início do processo invasivo e foram os alvos deste trabalho. Foram expressos dois recombinantes a partir deste cerne funcional (integrina e trombospondinas), com 52 e 78 kDa, e seus respectivos anti-soros foram obtidos. Estes foram utilizados em western blots 1D e 2D para localização da forma nativa de NcTRAP 2 de aproximadamente 80 kDa no extrato total e de sua forma processada no ESA (extrato secretado, simulando o momento invasivo do taquizoíta) com 70 kDa. O soro contra o recombinante 1 teve a capacidade de inibir o processo invasivo em valores de 53 a 61%, dependendo do método utilizado (contagem manual ou real time PCR). NcTRAP 2 foi encontrada no complexo apical parasitário do taquizoíta por imunofluorêscencia confocal, evidenciando sua provável localização nas micronemas. A nova molécula, NcTRAP 2 possui características que a diferencia de NcTRAP 1 o suficiente para ser considerada homóloga. O soro contra sua forma recombinante detectou as formas nativas integral e secretada e demonstrou que NcTRAP 2 possui capacidade de inibir a invasão dos taquizoítas, o que a torna um interessante alvo vacinal. / Neospora caninum is an Apicomplexan protozoan, obligatory intracellular parasite that has the dog as definitive host and especially cattle as intermediate hosts, causing in the first ones encephalopathy and in the last ones abortion with fertility losses. Such facts lead to significant losses to livestock worldwide. The parasite must invade the cells for its development, using the discharge of proteins contained in phylum-specific organelles, like the micronemes proteins related with adhesion and active invasion, besides the proteins from rhoptries and dense granules. This work was performed on a type of micronemic protein, a thrombospondin-related anonymous protein (TRAP), related with adhesion and connection with the intracellular motor responsible for the active process of invasion. Based on the homologue previously described in the literature, TRAP 1, the aim of this study was the characterization of the undescribed TRAP 2 homologue, the expression of its recombinant forms, the use of its anti-sera for functional assays, and detection of its native form. Based on ESTs and genomic data from N. caninum, and using the RLM-RACE (ligase mediated rapid amplification of cDNA ends) technique, the complete sequence of NcTRAP 2 was obtained, which had four exons separated by three introns. As NcTRAP 1, the protein sequence is composed of a signal peptide, an integrin, five thrombospondin, a transmembrane region and a cytoplasmatic tail. The integrin and thrombospondin motifs are related to adhesion for initiation of the invasive process and were the targets of this work. We expressed two recombinant fragments from the functional core (thrombospondin and integrin), with 52 and 78 kDa, which were utilized for antisera production. The anti-sera localized the native form NcTRAP 2 which had approximately 80 kDa, and its processed form in ESA (Excreted/Secreted Antigen) with 70 kDa, both in western blot 1D and 2D. The serum against recombinant 1 had the ability to inhibit the invasive process from 53 to 61%, depending on the experimental method used (manual counting or real time PCR). NcTRAP 2 was localized at the apical complex of the parasite of the tachyzoites by confocal immunofluorescence, pointing towards its micronemal localization. The new molecule, NcTRAP 2, holds features that differentiates it from NcTRAP 1 in a substantial way to be considered homologue. The serum against the recombinant form detected the native full length and secreted forms of NcTRAP 2 and demonstrated that NcTRAP 2 has the ability to inhibit the invasion of tachyzoites, turning it into an interesting vaccine target to be investigated.

Thrombospondin-1 (TSP-1) binding to its membrane receptor CD47 results in an inhibtion of the nitric oxide (NO) receptor soluble guanylate cyclase (sGC) and a decrease in intracellular cGMP levels. This causes physiologic effects such as vasoconstriction and a rise in blood pressure. The mechanism by which TSP-1 binds to CD47 at the membrane to decrease sGC activity is largely unknown. CD47 can physically associate with a number of binding partners, including α(v)β₃ and vascular endothelial growth factor receptor 2 (VEGFR2). Binding of a C-terminal fragment of TSP-1 called E3CaG1 to CD47 leads to a rise in intracellular calcium ([Ca²⁺](i)), which decreases sGC activity via a phosphorylation event. Binding of E3CaG1 is also known to disrupt the interaction between CD47 and VEGFR2, leading to a decrease in endothelial nitric-oxide synthase (eNOS) activity and cGMP levels through an Akt signaling pathway. However, it is not known whether other membrane proteins associated with CD47 are required for E3CaG1 binding and a subsequent [Ca²⁺](i) increase. Plasmon-waveguide resonance (PWR) spectroscopy was employed to elucidate the mechanism of TSP-1 inhibition of sGC activity through membrane complexes involving CD47. Using PWR, I found E3CaG1 can bind specifically to CD47 within native Jurkat membranes with picomolar and nanomolar dissociation constants (K(d)), suggesting multiple CD47 complexes are present. Among these complexes, CD47/VEGFR2 was found to bind E3CaG1 with a picomolar K(d)and CD47/α(v)β₃ was found to bind E3CaG1 with a nanomolar K(d). In addition, the presence of an anti-VEGFR2 antibody inhibited the E3CaG1-induced calcium response, which suggested CD47 in complex with VEGFR2 was responsible for TSP-1 reduction of sGC activity. I show that when both CD47 and VEGFR2 are returned to a HEK 293T cell line that does not contain these receptors, an increase in [Ca²⁺](i) upon E3CaG1 binding is restored. Interestingly, E3CaG1 was also found to bind to VEGFR2 in complex with the integrin α(v)β₃ on CD47-null cell lines and their derivations, causing a decrease in [Ca²⁺](i) levels. Therefore, the third type 2 repeat and C-terminal domains of TSP-1 can cause both increases and decreases in calcium based upon the availability of protein complexes to which it binds.

O carcinoma espinocelular é responsável por 90% das lesões malignas na cavidade bucal, sendo o oitavo tipo de câncer em todo o mundo e apresenta uma taxa de sobrevida de apenas 50% em 5 anos. Os carcinomas podem se desenvolver diretamente de células epiteliais normais ou a partir das desordens potencialmente malignas, as quais envolvem as hiperplasias e as displasias. Para que estas lesões se desenvolvam é necessário que nutrientes e oxigênio sejam disponibilizados, o que ocorre a partir da formação de uma nova vasculatura. Este processo, denominado angiogênese, é complexo e envolve a regulação de diferentes fatores indutores, como as moléculas Angiopoetina 1 (ANG1) e Trombospondina 1 (TSP1), cuja ação pode ser influenciada tanto pelas células de origem epitelial quanto pelos componentes do microambiente da lesão. O objetivo deste projeto foi descrever o perfil de expressão das moléculas angiopoetina 1 e trombospondina 1 em biópsias de desordens potencialmente malignas e em carcinoma espinocelular oral. A amostra foi composta por biópsias de pacientes que apresentaram diagnóstico de hiperplasia (n=6), displasia epitelial leve (n=7), displasia epitelial severa (n=15), carcinoma espinocelular oral grau 1 e 2 (n= 13) e 3 e 4 (n=13). As lâminas histológicas foram submetidas à reação de imunoistoquímica para ANG1 e TSP1, das quais foi realizada uma análise descritiva quanto ao perfil de marcação tanto em epitélio quanto em tecido conjuntivo subjacente à lesão. Angiopoetina apresentou uma marcação concentrada principalmente nas células endoteliais e com leve marcação nas células da camada basal do epitélio, sendo observada uma redução da intensidade de marcação de acordo com o grau de severidade da desordem epitelial, porém com um aumento de marcação em células do microambiente tumoral. Trombospondina apresentou marcação heterogênea tanto em tecido epitelial, endotelial e conjuntivo, com um aumento da marcação em macrófagos e fibroblastos de acordo com a severidade da lesão. Este perfil diferenciado de expressão destes marcadores do processo de angiogênese, tanto por células epiteliais modificadas quanto por células do microambiente celular, evidencia a necessidade de mais estudos que explorem a diversidade celular das lesões neoplásicas, com o objetivo de aprimorar as terapias anti-angiogênicas vigentes para o tratamento de desordens potencialmente malignas. / Oral squamous cell carcinoma is the eight most common cancer and it accounts for 90% of malignant lesions in the oral cavity, presenting a survival rate of only 50% after 5 years. Carcinomas may develop directly from normal epithelial cells or from the potentially malignant disorders, such as hyperplasia and dysplasia. During the carcinogenesis process, it is necessary an increase on nutrients and oxygen supply, which occurs through the formation of new vasculature. This process, known as angiogenesis, is complex and involves the regulation of various inducing factors such as angiopoietin molecules 1 (ANG1) and Thrombospondin 1 (TSP1), whose action can be influenced both by epithelial cells or cells from the lesion microenvironment . The objective of this project was to describe the expression profile of molecules angiopoietin 1 and thrombospondin 1 in biopsies of potentially malignant disorders and oral squamous cell carcinoma. The sample consisted of biopsies from patients who were diagnosed with hyperplasia (n = 6), mild dysplasia (n=7), severe dysplasia (n=15), squamous cell carcinoma grade 1 and 2 (n=13) and 3 and 4 (n=13). The histological slides were submitted to immunohistochemical reaction to ANG1 and TSP1, which underwent a descriptive analysis of the staining profile in both epithelium and in the underlying connective tissue to injury. Angiopoietin showed staining mainly in endothelial cells and a subtle staining on cells at the basal layer of the epithelium, and it was observed a reduction in the intensity of the staining in accordance with the severity of epithelial disorder, but with an increase of staining of cells from the microenvironment. Thrombospondin presented a heterogeneous staining among epithelial, endothelial, and connective tissue, with an increase in the staining on macrophages and fibroblasts according to the severity of injury. This differential expression profile of these markers of angiogenesis process, which was observed in both epithelial cells and cells from the microenvironment, highlights the need for more studies exploring the cellular diversity of neoplastic lesions, in order to improve the existing anti-angiogenic therapies for the treatment of malignant disorders.

O carcinoma espinocelular é responsável por 90% das lesões malignas na cavidade bucal, sendo o oitavo tipo de câncer em todo o mundo e apresenta uma taxa de sobrevida de apenas 50% em 5 anos. Os carcinomas podem se desenvolver diretamente de células epiteliais normais ou a partir das desordens potencialmente malignas, as quais envolvem as hiperplasias e as displasias. Para que estas lesões se desenvolvam é necessário que nutrientes e oxigênio sejam disponibilizados, o que ocorre a partir da formação de uma nova vasculatura. Este processo, denominado angiogênese, é complexo e envolve a regulação de diferentes fatores indutores, como as moléculas Angiopoetina 1 (ANG1) e Trombospondina 1 (TSP1), cuja ação pode ser influenciada tanto pelas células de origem epitelial quanto pelos componentes do microambiente da lesão. O objetivo deste projeto foi descrever o perfil de expressão das moléculas angiopoetina 1 e trombospondina 1 em biópsias de desordens potencialmente malignas e em carcinoma espinocelular oral. A amostra foi composta por biópsias de pacientes que apresentaram diagnóstico de hiperplasia (n=6), displasia epitelial leve (n=7), displasia epitelial severa (n=15), carcinoma espinocelular oral grau 1 e 2 (n= 13) e 3 e 4 (n=13). As lâminas histológicas foram submetidas à reação de imunoistoquímica para ANG1 e TSP1, das quais foi realizada uma análise descritiva quanto ao perfil de marcação tanto em epitélio quanto em tecido conjuntivo subjacente à lesão. Angiopoetina apresentou uma marcação concentrada principalmente nas células endoteliais e com leve marcação nas células da camada basal do epitélio, sendo observada uma redução da intensidade de marcação de acordo com o grau de severidade da desordem epitelial, porém com um aumento de marcação em células do microambiente tumoral. Trombospondina apresentou marcação heterogênea tanto em tecido epitelial, endotelial e conjuntivo, com um aumento da marcação em macrófagos e fibroblastos de acordo com a severidade da lesão. Este perfil diferenciado de expressão destes marcadores do processo de angiogênese, tanto por células epiteliais modificadas quanto por células do microambiente celular, evidencia a necessidade de mais estudos que explorem a diversidade celular das lesões neoplásicas, com o objetivo de aprimorar as terapias anti-angiogênicas vigentes para o tratamento de desordens potencialmente malignas. / Oral squamous cell carcinoma is the eight most common cancer and it accounts for 90% of malignant lesions in the oral cavity, presenting a survival rate of only 50% after 5 years. Carcinomas may develop directly from normal epithelial cells or from the potentially malignant disorders, such as hyperplasia and dysplasia. During the carcinogenesis process, it is necessary an increase on nutrients and oxygen supply, which occurs through the formation of new vasculature. This process, known as angiogenesis, is complex and involves the regulation of various inducing factors such as angiopoietin molecules 1 (ANG1) and Thrombospondin 1 (TSP1), whose action can be influenced both by epithelial cells or cells from the lesion microenvironment . The objective of this project was to describe the expression profile of molecules angiopoietin 1 and thrombospondin 1 in biopsies of potentially malignant disorders and oral squamous cell carcinoma. The sample consisted of biopsies from patients who were diagnosed with hyperplasia (n = 6), mild dysplasia (n=7), severe dysplasia (n=15), squamous cell carcinoma grade 1 and 2 (n=13) and 3 and 4 (n=13). The histological slides were submitted to immunohistochemical reaction to ANG1 and TSP1, which underwent a descriptive analysis of the staining profile in both epithelium and in the underlying connective tissue to injury. Angiopoietin showed staining mainly in endothelial cells and a subtle staining on cells at the basal layer of the epithelium, and it was observed a reduction in the intensity of the staining in accordance with the severity of epithelial disorder, but with an increase of staining of cells from the microenvironment. Thrombospondin presented a heterogeneous staining among epithelial, endothelial, and connective tissue, with an increase in the staining on macrophages and fibroblasts according to the severity of injury. This differential expression profile of these markers of angiogenesis process, which was observed in both epithelial cells and cells from the microenvironment, highlights the need for more studies exploring the cellular diversity of neoplastic lesions, in order to improve the existing anti-angiogenic therapies for the treatment of malignant disorders.

Neospora caninum é um protozoário Apicomplexa, parasita intracelular obrigatório que possui o cão como hospedeiro definitivo e principalmente os bovinos como hospedeiros intermediários, causando nos primeiros encefalopatia e nos últimos abortos com perda da fertilidade, o que acarreta prejuízos significativos na pecuária mundial. O parasita necessita multiplicar de modo intra-celular, utilizando a descarga de proteínas contidas em organelas filo-específicas, como as micronemas que liberam proteínas relacionadas a adesão e invasão ativa, além das roptrias e os grânulos densos. Este trabalho foi realizado sobre um tipo de proteína micronêmica denominada proteína Anônima Relacionada à Trombospondina (TRAP), relacionada à adesão e ligação com o motor intracelular, responsável pelo processo ativo de invasão. TRAP 1 já havia sido descrita pela literatura e o objetivo deste trabalho foi a caracterização molecular do até então desconhecido homólogo TRAP 2, com expressão de suas formas recombinantes e o uso de seus respectivos anti-soros para ensaios funcionais e localização da proteína nativa. Com base em banco dados de ESTs e genômicos de N. caninum e fazendo uso de RLM-RACE (Reação mediada por RNA ligase- amplificação rápida dos términos de cDNA-RNA,) foi possível a obtenção da sequencia completa do gene NcTrap 2, que possui quatro éxons separados por três íntrons. Sua forma protéica, como seu homológo, é formado por um peptídeo sinal, uma integrina, cinco trombospondinas, uma região transmembrana e a cauda citoplasmática. A integrina e as trombospondinas são motivos relacionados à adesão para início do processo invasivo e foram os alvos deste trabalho. Foram expressos dois recombinantes a partir deste cerne funcional (integrina e trombospondinas), com 52 e 78 kDa, e seus respectivos anti-soros foram obtidos. Estes foram utilizados em western blots 1D e 2D para localização da forma nativa de NcTRAP 2 de aproximadamente 80 kDa no extrato total e de sua forma processada no ESA (extrato secretado, simulando o momento invasivo do taquizoíta) com 70 kDa. O soro contra o recombinante 1 teve a capacidade de inibir o processo invasivo em valores de 53 a 61%, dependendo do método utilizado (contagem manual ou real time PCR). NcTRAP 2 foi encontrada no complexo apical parasitário do taquizoíta por imunofluorêscencia confocal, evidenciando sua provável localização nas micronemas. A nova molécula, NcTRAP 2 possui características que a diferencia de NcTRAP 1 o suficiente para ser considerada homóloga. O soro contra sua forma recombinante detectou as formas nativas integral e secretada e demonstrou que NcTRAP 2 possui capacidade de inibir a invasão dos taquizoítas, o que a torna um interessante alvo vacinal. / Neospora caninum is an Apicomplexan protozoan, obligatory intracellular parasite that has the dog as definitive host and especially cattle as intermediate hosts, causing in the first ones encephalopathy and in the last ones abortion with fertility losses. Such facts lead to significant losses to livestock worldwide. The parasite must invade the cells for its development, using the discharge of proteins contained in phylum-specific organelles, like the micronemes proteins related with adhesion and active invasion, besides the proteins from rhoptries and dense granules. This work was performed on a type of micronemic protein, a thrombospondin-related anonymous protein (TRAP), related with adhesion and connection with the intracellular motor responsible for the active process of invasion. Based on the homologue previously described in the literature, TRAP 1, the aim of this study was the characterization of the undescribed TRAP 2 homologue, the expression of its recombinant forms, the use of its anti-sera for functional assays, and detection of its native form. Based on ESTs and genomic data from N. caninum, and using the RLM-RACE (ligase mediated rapid amplification of cDNA ends) technique, the complete sequence of NcTRAP 2 was obtained, which had four exons separated by three introns. As NcTRAP 1, the protein sequence is composed of a signal peptide, an integrin, five thrombospondin, a transmembrane region and a cytoplasmatic tail. The integrin and thrombospondin motifs are related to adhesion for initiation of the invasive process and were the targets of this work. We expressed two recombinant fragments from the functional core (thrombospondin and integrin), with 52 and 78 kDa, which were utilized for antisera production. The anti-sera localized the native form NcTRAP 2 which had approximately 80 kDa, and its processed form in ESA (Excreted/Secreted Antigen) with 70 kDa, both in western blot 1D and 2D. The serum against recombinant 1 had the ability to inhibit the invasive process from 53 to 61%, depending on the experimental method used (manual counting or real time PCR). NcTRAP 2 was localized at the apical complex of the parasite of the tachyzoites by confocal immunofluorescence, pointing towards its micronemal localization. The new molecule, NcTRAP 2, holds features that differentiates it from NcTRAP 1 in a substantial way to be considered homologue. The serum against the recombinant form detected the native full length and secreted forms of NcTRAP 2 and demonstrated that NcTRAP 2 has the ability to inhibit the invasion of tachyzoites, turning it into an interesting vaccine target to be investigated.

O carcinoma espinocelular é responsável por 90% das lesões malignas na cavidade bucal, sendo o oitavo tipo de câncer em todo o mundo e apresenta uma taxa de sobrevida de apenas 50% em 5 anos. Os carcinomas podem se desenvolver diretamente de células epiteliais normais ou a partir das desordens potencialmente malignas, as quais envolvem as hiperplasias e as displasias. Para que estas lesões se desenvolvam é necessário que nutrientes e oxigênio sejam disponibilizados, o que ocorre a partir da formação de uma nova vasculatura. Este processo, denominado angiogênese, é complexo e envolve a regulação de diferentes fatores indutores, como as moléculas Angiopoetina 1 (ANG1) e Trombospondina 1 (TSP1), cuja ação pode ser influenciada tanto pelas células de origem epitelial quanto pelos componentes do microambiente da lesão. O objetivo deste projeto foi descrever o perfil de expressão das moléculas angiopoetina 1 e trombospondina 1 em biópsias de desordens potencialmente malignas e em carcinoma espinocelular oral. A amostra foi composta por biópsias de pacientes que apresentaram diagnóstico de hiperplasia (n=6), displasia epitelial leve (n=7), displasia epitelial severa (n=15), carcinoma espinocelular oral grau 1 e 2 (n= 13) e 3 e 4 (n=13). As lâminas histológicas foram submetidas à reação de imunoistoquímica para ANG1 e TSP1, das quais foi realizada uma análise descritiva quanto ao perfil de marcação tanto em epitélio quanto em tecido conjuntivo subjacente à lesão. Angiopoetina apresentou uma marcação concentrada principalmente nas células endoteliais e com leve marcação nas células da camada basal do epitélio, sendo observada uma redução da intensidade de marcação de acordo com o grau de severidade da desordem epitelial, porém com um aumento de marcação em células do microambiente tumoral. Trombospondina apresentou marcação heterogênea tanto em tecido epitelial, endotelial e conjuntivo, com um aumento da marcação em macrófagos e fibroblastos de acordo com a severidade da lesão. Este perfil diferenciado de expressão destes marcadores do processo de angiogênese, tanto por células epiteliais modificadas quanto por células do microambiente celular, evidencia a necessidade de mais estudos que explorem a diversidade celular das lesões neoplásicas, com o objetivo de aprimorar as terapias anti-angiogênicas vigentes para o tratamento de desordens potencialmente malignas. / Oral squamous cell carcinoma is the eight most common cancer and it accounts for 90% of malignant lesions in the oral cavity, presenting a survival rate of only 50% after 5 years. Carcinomas may develop directly from normal epithelial cells or from the potentially malignant disorders, such as hyperplasia and dysplasia. During the carcinogenesis process, it is necessary an increase on nutrients and oxygen supply, which occurs through the formation of new vasculature. This process, known as angiogenesis, is complex and involves the regulation of various inducing factors such as angiopoietin molecules 1 (ANG1) and Thrombospondin 1 (TSP1), whose action can be influenced both by epithelial cells or cells from the lesion microenvironment . The objective of this project was to describe the expression profile of molecules angiopoietin 1 and thrombospondin 1 in biopsies of potentially malignant disorders and oral squamous cell carcinoma. The sample consisted of biopsies from patients who were diagnosed with hyperplasia (n = 6), mild dysplasia (n=7), severe dysplasia (n=15), squamous cell carcinoma grade 1 and 2 (n=13) and 3 and 4 (n=13). The histological slides were submitted to immunohistochemical reaction to ANG1 and TSP1, which underwent a descriptive analysis of the staining profile in both epithelium and in the underlying connective tissue to injury. Angiopoietin showed staining mainly in endothelial cells and a subtle staining on cells at the basal layer of the epithelium, and it was observed a reduction in the intensity of the staining in accordance with the severity of epithelial disorder, but with an increase of staining of cells from the microenvironment. Thrombospondin presented a heterogeneous staining among epithelial, endothelial, and connective tissue, with an increase in the staining on macrophages and fibroblasts according to the severity of injury. This differential expression profile of these markers of angiogenesis process, which was observed in both epithelial cells and cells from the microenvironment, highlights the need for more studies exploring the cellular diversity of neoplastic lesions, in order to improve the existing anti-angiogenic therapies for the treatment of malignant disorders.

Ce document traite des aspects différents de la modélisation moléculaire d'une protéine de la matrice extracellulaire. Le domaine de signature des thrombospondines est étudié en détail dans ce document en faisant appel aux champs variés de la science. La complexité de ce domaine nécessite l'utilisation des approches de la mécanique quantique moléculaire en plus de la dynamique moléculaire classique. En reliant les deux approches un nouveau algorithme a été développé afin d'attribuer des charges partielles à partir des résultats obtenus par des méthodes ab-initio. Pour implémenter cet algorithme d'une façon efficace, les nouvelles méthodes de la programmation massivement parallèle ont été utilisées qui nous permettent entre autres de faire tourner cet algorithme sur les procsesseurs graphiques. Nous avons également utilisé et développé des nouvelles méthodes de la visualisation moléculaire rapprochant l'art à la science. En plus, de ces développements nous avons obtenus des résultats intéressants sur la dynamique du domaine de signature. Nous avons pu identifier les ions échangeables de ce domaine. Nous avons vérifié et élargie les modèles existants de la thrombospondine dans des concentrations faibles de calcium. En utilisant la dynamique moléculaire nous avons également évalué des sites importants de fixations pour le développement de nouveaux médicaments contre le cancer. / This document deals with the various aspects of molecular modeling of a protein in the extracellular matrix. In this work the thrombospondin signature domain is studied in detail, using various methods from different fields of science. Due to the complexity of the protein, a classical molecular dynamics and a quantum molecular approach is chosen to gain insights into the thrombospondin signature domain. During this process a new algorithm that allows to derive partial charges from ab-initio calculations has been developed. In order to run this algorithm in an efficient way new programming techniques, such as massive multiparallel programming on graphics processors has been used. Further new visualization methods have been either tried or developed effectively generating a new kind of art from the scientific results that have been obtained in this project. Besides these developments several interesting insights into the dynamics of thrombospondins have been revealed. We were able to identify the exchangeable ions within the thrombospondin signature domain, and were further capable to verify and extend existing models for a low calcium signature domain structure. Binding sites important for cancer drug design have also been evaluated using the molecular dynamics simulations.

Les métastases sont à l'origine dans 90% des cas du décès des patients et sont donc un enjeu thérapeutique majeur. Les traitements anti-angiogéniques qui inhibent la vascularisation tumorale et augmentent l'hypoxie ont une efficacité limitée en clinique. Des liens ont été établis entre l'hypoxie et le changement métabolique des cellules tumorales, l'augmentation des cellules souches cancéreuses, la transition épithélio-mésenchymateuse et la résistance aux traitements mais également la dissémination métastatique. Ces observations nous ont poussés à réévaluer le rôle de l'hypoxie dans la dissémination métastatique du cancer du sein, en nous focalisant sur l'étude du premier inhibiteur endogène de l'angiogenèse identifié, la Thrombospondine 1 (TSP1). En clinique, nous avons observé que l'expression de la TSP1 est corrélée aux marqueurs d'agressivité et qu'elle augmente avec le grade tumoral. Dans un modèle orthotopique de tumeurs mammaires métastatiques, nous avons montré que l'inhibition de la TSP1 réduit fortement l'EMT, l'invasion et les métastases pulmonaires alors même que la vascularisation de la tumeur primaire est densifiée et plus fonctionnelle, réduisant l'hypoxie. Pour déterminer le rôle de la TSP1 dans la survenue des métastases, nous avons effectué des mutations ponctuelles de ce gène dans le domaine d'activation du TGFbéta ou dans celui de la liaison au CD36 qui médie majoritairement les propriétés anti-angiogéniques de la TSP1. La mutation de l'une ou l'autre de ces séquences entraîne une diminution drastique des métastases pulmonaires. Ce travail nous conduit à proposer un nouveau concept thérapeutique, visant à normaliser la vascularisation tumorale et à réduire l'hypoxie par une stratégie "anti-antiangiogénique" basée sur l'inhibition de la TSP1. Cette stratégie devrait inhiber la dissémination métastatique et favoriser la pénétration des traitements chimiothérapeutiques et augmenter l'efficacité de la radiothérapie, dépendante de la présence d'oxygène. / Metastasis are responsible for 90% of cases of patients death and so represent a major therapeutic challenge in oncology. Anti-angiogenic treatments, which inhibit tumor vascularization and increase hypoxia, have limited clinical efficiency. This inefficiency could be a consequence of hypoxia. Indeed, links have been established between hypoxia and: metabolic changes in tumor cells, increase in cancer stem cells, epithelial-mesenchymal transition and resistance to treatment. Experimental and clinical evidence also suggest that hypoxia may directly induce metastatic dissemination. These observations led us to reassess the role of hypoxia in metastatic dissemination by focusing on the study of the first identified endogenous angiogenic inhibitor, the Thrombospondin 1 (TSP1). TSP1 is also an activator of latent TGFbéta. The aim of this work was to study the role of TSP1 in tumor progression and dissemination of metastatic breast cancer. In clinic, we observed that the expression of TSP1 is correlated with markers of aggressiveness and that it increases with tumor grade. In an orthotopic model of metastatic breast tumors, we have shown that inhibition of TSP1 strongly reduce EMT, invasion and lung metastasis meanwhile the vascularization of the primary tumor is densified and more functional, thus reducing hypoxia. To determine the role of TSP1 in the occurrence of metastasis, we generate point mutations of this gene in TGFbéta activation domain or in the binding domain to CD36 that predominantly mediates the anti-angiogenic properties of TSP1. Mutations of either of these sequences result in a drastic decrease in lung metastasis, which confirms the importance of TGFbéta in metastatic dissemination. Our results also demonstrate a direct link between hypoxia and metastasis: the inactivation of anti-angiogenic properties of TSP1, which increases tumor perfusion and decreases hypoxia without affecting primary tumor growth, blocks metastatic dissemination even though the cells have the ability to migrate. This work led us to propose a new therapeutic concept aiming to normalize tumor vascularization and reduce hypoxia by an "anti-antiangiogenic" strategy based on TSP1 inhibition. This strategy should inhibit metastatic spreading, promote the diffusion of chemotherapeutic treatments and increase the efficiency of radiotherapy, dependent on oxygen presence.

Abstract Cardiac hypertrophy is an adaptive response to increased cardiac workload. It is initially beneficial, since it helps to maintain cardiac output, but ultimately it is considered as an independent predictor for heart failure and sudden cardiac death. The cardiac hypertrophic response is triggered by mechanical and neurohumoral stimuli and is associated with the activation of complex changes in gene programming and intracellular signaling pathways. The purpose of this study was to investigate the expression of some novel load-induced factors i.e. melusin, thrombospondin (TSP)-1 and -4 and LIM and cysteine-rich domains protein 1 (LMCD1)/dyxin during the hypertrophic response. Melusin was expressed in cardiac tissue both in the atria and ventricles, furthermore its expression was very rapidly activated in response to multiple hypertrophic stimuli predominantly in the left atria. Melusin gene expression was activated when cultured cardiac myocytes were subjected to mechanical stretch or hypertrophic agonists such as endothelin-1 or angiotensin (Ang II). TSP-1 and TSP-4 gene expressions were rapidly activated at an early stage of pressure overload. Myocardial infarction (MI) induced the expression of both TSP-4 and TSP-1 mRNA in the heart. TSP-4 may also be an endothelial cell-specific marker of pressure overload since its expression was limited to endothelial cells in the adult heart. The expression of LMCD1/dyxin was found to be induced during the cardiac hypertrophic response and after MI. By itself, mechanical load was a critical regulator of LMCD1/dyxin gene expression. LMCD1/dyxin is a putative novel p38 mitogen-activated protein kinase (MAPK) target since adenovirus-mediated overexpression of p38 MAPK upregulated LMCD1/dyxin expression. In addition, during the Ang II-induced pressure overload p38 MAPK phosphorylation levels correlated with the early induction of LMCD1/dyxin expression. In conclusion, this study provides new information on the expression of melusin, TSP-1 and -4 and LMCD1/dyxin in the cardiac hypertrophic response. Early induction of their gene expression may represent an initial step in the adaptive and protective remodeling processes following increased workload in the heart. / Tiivistelmä Sydänlihas mukautuu lisääntyneeseen kuormitukseen lihassolujen koon kasvun eli hypertrofian avulla. Pitkittyessään hypertrofinen kasvu on kuitenkin tärkeä sydämen vajaatoimintaa ja äkkikuolemaa ennakoiva riskitekijä. Hypertrofisessa vasteessa mekaaninen venytys sekä neurohumoraaliset tekijät saavat aikaan solunsisäisten signaalinvälitysreittien aktivoitumisen, mikä johtaa lisääntyneeseen geenien luentaan ja proteiinituotantoon. Väitöskirjassa tutkittiin uusien kuormitusaktivoituvien tekijöiden, melusiinin, trombospondiini (TSP) -1:n ja -4:n sekä dyksiinin ilmentymistä hypertrofisen vasteen aikana. Melusiinia ilmentyy sydämessä sekä kammioissa että eteisissä, mutta painekuormituksen myötä se aktivoituu nopeasti pääasiassa vasemmassa eteisessä. Sydänlihassolujen soluviljelymallissa melusiinin luenta lisääntyy suoraan mekaanisen venytyksen ja hypertrofisten agonistien vaikutuksesta. Painekuormitus aktivoi nopeasti myös TSP-1:n ja -4:n luentaa sydämessä. TSP-1:n ja -4:n geeniluenta lisääntyy myös kokeellisessa sydäninfarktimallissa. Lisäksi sydämessä TSP-4:ää havaittiin olevan ensisijaisesti endoteelisoluissa. Dyksiinin ilmentyminen lisääntyi sekä painekuormituksen että sydäninfarktin aiheuttaman sydänlihaksen uudelleenmuovautumisen aikana. Mekaaninen kuormitus riitti jo yksinään aktivoimaan dyksiinin geeniluentaa sydämessä. Lisäksi mitogeeni-aktivoituvan p38-proteiinikinaasin havaittiin säätelevän dyksiinin ilmentämistä. Väitöskirjatyössä saatiin uutta tietoa sydänlihaksen kuormituksen aikaisista muutoksista geenien luennassa sydänlihaksessa. Työssä osoitettiin, että painekuormitus aktivoi sydämessä aiemmin vähän tutkittujen geenien, melusiinin, TSP-1:n ja -4:n sekä dyksiinin, ilmentymistä. Näiden tekijöiden aktivoituminen hypertrofisen vasteen alkuvaiheessa antaa viitettä siitä, että tekijät osallistuvat kuormittuneen sydänlihaskudoksen uudelleenmuovautumiseen. Melusiini voi toimia erityisesti eteiskudosta kuormitukselta suojaavissa mekanismeissa, kun taas TSP-4 osoittautui aktivoituvan painekuormituksessa nimenomaan endoteelisoluissa.

Thrombospondin-1 (TSP-1) is synthesized, secreted, and incorporated into the extracellular matrix by a variety of cells, including the endothelial cells. Addition of angiotensin II (AII) significantly induced TSP-1 mRNA in rat heart-derived endothelial cells. TSP-1 mRNA levels reached a plateau within 2 h after the addition of AII and decreased after 5 h. The induction was superinduced by cycloheximide and blocked by actinomycin D. Losartan, an AT1 receptor antagonist, could abolish the induction of TSP-1 mRNA by AII. Phorbol 12-myristate 13-acetate (TPA) was found to enhance TSP-1 mRNA level whereas a protein kinase C inhibitor, H7, was shown to block the induction. Immunoblot analysis revealed that TSP-1 was detectable in the medium 4 h after AII stimulation. Our results suggest that the upregulation of TSP-1 by All represents an important mechanism leading to perivascular fibrosis in the heart.