Introduction: Diabetes mellitus is a polygenic disease and its development is influenced to some extent by environmental factors as well. Innate immunity triggers nonspecifically first defense reactions after penetration of the pathogen into the body, while overstimulation components of innate immunity may give rise to autoimmune diseases, including diabetes type 1. The components of innate immunity are, among others, Toll-like receptors (TLRs) belonging to a group of the structures recognizing preserved molecular structures characteristic of pathogens. Toll-like receptors are abundantly expressed by monocytes which produce prolactin (PRL) having an immunostimulatory function. To clarify the role of innate immunity in the pathogenesis of diabetes, we focused on the expression of mRNA and protein expression of TLR2 and TLR4. The expression of PRL was studied only at the level of mRNA. Monocytes were separated by flow cytometry into classical (CD14++) and nonclassical (CD14+). We monitored their percentages and the degree of expression of CD14 antigen on their surface.The operational objective of this dissertation was to optimize the stimulation of monocytes for the planned study of the function of non-pituitary prolactin in vitro and determine the appropriateness of the use of healthy donors' buffy...

La vaccination est un moyen de prévention très efficace contre les infections. La majorité des vaccins sont administrés par voie sous-cutanée ou intra-musculaire avec des adjuvants et stimulent ainsi des réponses immunitaires adaptatives systémiques. Les muqueuses représentent une porte d’entrée majeure pour de nombreux pathogènes ayant un impact en Santé Publique. Cependant, peu de vaccins sont délivrés par les muqueuses en raison du manque d’adjuvants adaptés à ces voies. Ainsi le développement d'adjuvants muqueux permettrait la stimulation de réponses immunitaires locales et une protection efficace avant la dissémination des pathogènes. Les agonistes des Toll-Like-Receptors (TLR) sont développés comme adjuvants vaccinaux car ils stimulent l’immunité innée et adaptative. Au laboratoire, la flagelline de Salmonella enterica qui est un puissant agoniste de TLR5 est utilisée comme modèle afin de disséquer les mécanismes d’action des adjuvants muqueux. En effet, l'administration intranasale de vaccins adjuvantés par la flagelline se caractérise par une réponse T CD4+ de type Th1/Th2, une réponse en anticorps sécrétoires dans le compartiment respiratoire et une réponse systémique contre les antigènes vaccinaux. Seule l’activation de TLR5 dans le compartiment épithélial est nécessaire à l’activité adjuvante.Dans un premier temps, l'analyse transcriptionnelle du tissu pulmonaire a permis d'identifier une signature épithéliale spécifique du recrutement de cellules immunitaires, en particulier de monocytes et de neutrophiles ainsi que de l'activation fonctionnelle des cellules dendritiques. L'analyse de la dynamique cellulaire au niveau du tractus respiratoire et des ganglions drainants a ensuite été réalisée en réponse à l’administration intranasale de vaccin adjuvanté. Bien que les monocytes inflammatoires et les neutrophiles infiltrent massivement les poumons et capturent les antigènes, ils ne jouent pas de rôle majeur dans l’activation de la réponse immunitaire. Au contraire les cellules dendritiques conventionnelles CD11b+ capturent, migrent et présentent efficacement l’antigène aux lymphocytes T CD4+. A l'instar de l’effet adjuvant, l’activation de ces cellules dendritiques par la flagelline n'est pas directe mais requiert une expression de TLR5 dans les cellules structurales incluant les cellules épithéliales de la muqueuse. De plus, nos travaux suggèrent que les interleukines de la famille IL-1 ne sont pas à l'origine de la transactivation des cellules dendritiques.En conclusion, ce travail de thèse ouvre des perspectives intéressantes quant au développement d’adjuvants muqueux. / Many pathogens of public health concern (including the influenza and respiratory syncytial viruses, and bacteria such as Streptococcus pneumoniae and Pseudomonas aeruginosa) enter the body via the respiratory tract in general and the lung mucosa in particular. Mucosal vaccines induce a local adaptive immune response (i.e. secretory antibodies and specific T cells) and constitute a unique means of directly preventing these infections. Most vaccines are delivered systemically and use systemic adjuvants. Although the few commercially available mucosal vaccines are generally effective, mucosal adjuvant candidates have not demonstrated sufficient levels of potency and safety. TLR signaling is instrumental for the induction of innate immunity and the concomitant ignition of adaptive immune responses. Thus TLR agonists are largely used as vaccine adjuvants. In the lab we use flagellin from Salmonella enterica (a potent TLR5 agonist) as a model to better understand the mode of action of mucosal adjuvants. The intranasal adjuvant effect of flagellin is characterized by an antigen-specific Th1/Th2 cell response, and a strong mucosal and systemic antibody response. However this adaptive immune response mainly depends on TLR5-mediated epithelial signaling.We used molecular profiling to show that cytokine/chemokine and dendritic cell maturation pathways are surrogate signatures for flagellin activation in the lung. Neutrophils and inflammatory monocytes were massively recruited to the lungs but were not essential for the adjuvant activity. In contrast, flagellin signaling did not induce a significant recruitment of conventional dendritic cells but enhanced their maturation and migration to the lymph nodes. In particular, CD11b+ migratory dendritic cells were essential for induction of a CD4+ T-cell response. Importantly, the functional activation of dendritic cells was independent of direct signaling via TLR5, suggesting the role of inflammatory cytokines produced by the activated epithelium. However or data suggest that IL-1 and IL-36 interleukins are not responsible for transactivation of dendritic cell. In conclusion, this thesis project opens up new perspectives for the development of mucosal adjuvants.

Os tecidos pulpar e periodontal são frequentemente agredidos por fatores ambientais como calor, trauma mecânico e micro-organismos, sendo estes considerados o fator etiológico principal das periodontopatias e periapicopatias. Dentre as células residentes desses tecidos, especial atenção tem sido dada ao papel dos fibroblastos no desenvolvimento da resposta imune. Fibroblastos são células que respondem à estímulos microbianos e existem evidências do papel de receptores do tipo Toll (TLR) no reconhecimento desses estímulos. Dessa forma, o presente trabalho teve como objetivo principal avaliar o reconhecimento de Candida albicans por fibroblastos gengivais e pulpares. Para tal, fibroblastos isolados a partir de tecido gengival e pulpar de camundongos do grupo controle e deficientes de TLR2, CD14 e MyD88 foram avaliados quanto à expressão de TLRs e moléculas de superfície, resposta proliferativa e produção de citocinas (TGF-β, IL-1β, TNF-α, IL-13 e IL-6), após a estimulação com agonistas de TLR2, TLR4 e C. albicans. Fibroblastos gengivais e pulpares, apesar de provenientes de tecidos diferentes, apresentaram características morfológicas semelhantes. Contudo, a cinética de crescimento dos fibroblastos gengivais deficientes de MyD88 foi mais lenta, e fibroblastos pulpares demoraram mais tempo para surgir a partir dos fragmentos de tecido. A ausência de TLR2 e da molécula adaptadora MyD88 não afetaram a produção de colágeno Tipo I pelos fibroblastos gengivais. Entretanto, fibroblastos deficientes de CD14 apresentaram baixa produção de colágeno. Ademais, os fibroblastos gengivais expressaram TLR2, TLR3, TLR4, assim como as moléculas de adesão ICAM-1 e CD44. A ausência de TLR2 e CD14 interferiu na resposta proliferativa de fibroblastos gengivais e pulpares, respectivamente. O reconhecimento de C. albicans por fibroblastos gengivais e pulpares modulou a produção das citocinas. A produção de TNF-α foi dependente da sinalização via MyD88, CD14 e TLR2, enquanto que a produção de IL-1β e IL-13 foi dependente de TLR2. / Pulpal and periapical tissue are frequently injured by heat, mechanical trauma and microorganisms, which are considered the main etiological factor of periodontal and endodontic diseases. Among these tissue resident cells, special attention has been given to fibroblasts in the immune response. Fibroblasts are cells that recognize pathogens through Toll like receptors (TLR). The aim of this study was to evaluate the recognition of Candida albicans by pulpal and gingival fibroblasts from TLR2, CD14, MyD88 knockout mice and control group mice. The results were analyzed concerning the expression of TLR(s) and surface molecules, proliferative response and citokynes production (TGF-β, IL-1β, TNF-α, IL-13 e IL-6) after the cells stimulation with TLR2, TLR4 and C.albicans agonists. Gingival and Pulpal fibroblasts, even isolated from different tissue, showed morphological similarities; however, gingival fibroblast deficient of MyD88 show lower proliferative response and pulpa l fibroblasts needed more time to detach from tissue fragments. The production of Type I collagen was affected in gingival cells deficient of CD14. Gingival fibroblasts expressed TLR2, TLR3, TLR4, and the adhesion molecules (ICAM-1 and CD44). The absence of TLR2 and CD14 interfered with the proliferative response of pulpal and gingival fibroblasts, respectively. The recognition of C. albicans by gingival and pulpal fibroblasts modulated the citokynes production. TNF-α production after the recognition of C. albicans was dependent from MyD88, CD14 and TLR2 molecules, whereas the production of IL-1β and IL-13 was dependent of TLR2.

Os fibroblastos são atualmente considerados componentes ativos da resposta imune porque estas células expressam receptores do tipo Toll (TLRs), são capazes de reconhecer padrões moleculares associados a patógenos e mediar a produção de citocinas e quimiocinas durante a inflamação. A resposta imune inata do hospedeiro a lipopolissacarídeos (LPS) de Porphyromonas gingivalis é incomum, já que diferentes estudos relataram que este LPS pode ser um agonista para TLR2 e um antagonista ou agonista para TLR4. A sinalização por TLRs envolve proteínas adaptadoras, como MyD88 e TRAM, que são necessárias para a transdução do sinal até o núcleo para que ocorra a transcrição de RNAm para os mediadores da inflamação. O objetivo deste estudo foi investigar e comparar se a sinalização por meio de TLR2 ou TLR4 poderia afetar a produção de Interleucina (IL)-6, IL-8 e CXCL12 em fibroblastos humanos gengivais (HGF) e fibroblastos humanos de ligamento periodontal (HPLF). Objetivamos também comparar a participação das moléculas adaptadoras MyD88 e TRAM na expressão do RNAm dos mesmos alvos. Material e Métodos: Após silenciamento mediado por RNA de interferência de TLR2, TLR4, MyD88 ou TRAM, confirmado por RT-qPCR, HGF e HPLF, provenientes de três dadores voluntários, foram estimulados com LPS de Porphyromonas gingivalis ou com dois agonistas sintéticos de TLR2, Pam2CSK4 e Pam3CSK4, por 6 horas. A expressão do RNAm e das proteínas IL-6, IL-8, e CXCL12 foram avaliados por qRT-PCR e ELISA, respectivamente. Resultados: A expressão do RNAm de TLR2 foi regulada em HGF, mas não em HPLF por todos os estímulos. O silenciamento de TLR2 diminuiu IL-6 e IL-8 em resposta ao LPS de P. gingivalis, Pam2CSK4 e Pam3CSK4 de maneira semelhante, em ambas as subpopulações de fibroblastos (p<0,05). Por outro lado, a produção de CXCL12 permaneceu inalterada pelo silenciamento de TLR2 ou TLR4. No caso do silenciamento de MyD88 e TRAM, em ambos os subtipos de fibroblastos, o RNAm para os mesmos alvos também teve sua expressão diminuída (p<0,05). Já a expressão constitutiva de CXCL12 foi aumentada com o silenciamento de MyD88 ou TRAM (p<0,05). Conclusão: Estes resultados sugerem que a sinalização por meio de TLR2, por fibroblastos, as células residentes mais numerosas em gengiva e ligamento periodontal, pode controlar a produção de IL-6 e IL-8, que por sua vez contribuem para a patogênese periodontal, mas não interfere nos níveis de CXCL12, uma quimiocina importante no processo de reparação. Concluímos também que o silenciamento de MyD88 ou TRAM é capaz de diminuir o aumento da transcrição gênica de IL-6 e IL-8 provocado por LPS de P. gingivalis, embora a expressão constitutiva de CXCL12 seja regulada positivamente. / Fibroblasts are now seen as active components of the immune response because these cells express Toll-like receptors (TLRs), recognize pathogen associated molecular patterns and mediate the production of cytokines and chemokines during inflammation. The innate host response to lipopolysaccharide (LPS) from Porphyromonas gingivalis is unusual in that different studies have reported that it can be an agonist for TLR2 and an antagonist or agonist for TLR4. TLRs signaling pathway involves adaptor proteins, like MyD88 and TRAM, which are crucial for signal transduction to the nucleus and mRNA expression of inflammatory mediators. This study investigated and compared whether signaling through TLR2 or TLR4 could affect the production of IL-6, IL-8 and CXCL12 in both human gingival fibroblasts (HGF) and human periodontal ligament fibroblasts (HPLF). The role of MyD88 and TRAM on the mRNA expression of the same targets were also evaluated. Methods: After small interfering RNA-mediated silencing of TLR2, TLR4, MyD88 or TRAM, confirmed by RT-qPCR, HGF and HPLF from three volunteer donors were stimulated with P. gingivalis LPS or with two synthetic ligands of TLR2, Pam2CSK4 and Pam3CSK4, for 6 hours. IL-6, IL-8, and CXCL12 mRNA expression and protein production were evaluated by RT-qPCR and ELISA, respectively. Results: TLR2 mRNA expression was upregulated in HGF but not in HPLF by all the stimuli applied. Knockdown of TLR2 decreased IL-6 and IL-8 in response to P. gingivalis LPS, Pam2CSK4 and Pam3CSK4 in a similar manner in both fibroblasts subpopulations. Conversely, CXCL12 remained unchanged by TLR2 or TLR4 silencing. For MyD88 or TRAM silencing, IL-6 and IL-8 mRNA were also decreased, in both fibroblasts subtypes. However CXCL12 mRNA constitutive expression was increased by siMyD88 or siTRAM. Conclusion: These results suggest that signaling through TLR2 by fibroblasts, the most numerous resident cells in gingiva and periodontal ligament, may control the production of IL-6 and IL-8, which in turn contribute to periodontal pathogenesis, but does not interfere with CXCL12 levels, an important chemokine in the repair process. Also, MyD88 or TRAM knockdown may decrease the IL-6 and IL-8 LPS-induced upregulation and increase the constitutive CXCL12 mRNA.

Introdução: Um dos primeiros sistemas de defesa contra os microrganismos é a via dos receptores Toll-like (TLRs). A ativação destes receptores leva à síntese de citocinas, dando início à resposta imune inata. Em modelos animais, o TLR2, TLR4 e TLR9 parecem estar relacionados com o reconhecimento de antígenos de Leishmania. A relação entre TLRs e leishmânia pode ser um mecanismo chave no desenvolvimento da doença ou no controle da mesma. Até o momento não existem estudos de TLRs na leishmaniose cutânea humana. Objetivo: Determinar o padrão de expressão e as células associadas com o TLR2, TLR4 e TLR9 na leishmaniose cutânea. O objetivo secundário é correlacionar a quantidade de TLRs com a quantidade de citocinas e células inflamatórias na pele. Métodos: Cem biópsias de pacientes com leishmaniose cutânea causadas por Leishmania (V.) braziliensis foram selecionadas inicialmente. Apenas os casos confirmados (presença de amastigotas no raspado, teste de Montenegro positivo, imunoistoquímica com presença de antígenos de Leishmania e reação em cadeia da polimerase com DNA de Leishmania (V.) braziliensis foram incluídos. Um grupo controle de pele normal foi incluído para comparação (quatro casos). A expressão de TLR2, TLR4 e TLR9 foi determinada por técnica imunoistoquímica, da mesma forma que os fenótipos celulares (células NK, macrófagos, células dendríticas, células CD4 e CD8) e citocinas (IL-1, IL-6, IL-12, TNF-alfa, IFN-gama). Dupla-marcação foi realizada para identificar as células que expressaram os TLRs analisados. Análise semi-quantitativa foi utilizada para avaliação da expressão de TLRs na epiderme, enquanto na derme foi realizada análise quantitativa. O nível de significância foi estabelecido com p<0,05. Resultados: Doze casos preencheram os critérios de inclusão. Os pacientes eram todos masculinos, com lesões apenas em membros inferiores e mediana de idade de 23 anos [16-47]. A expressão de TLR2, TLR4 e TLR9 na epiderme da pele normal foi alta. Quando comparados com pele normal, tanto TLR4 quanto TLR2 mostraram menor expressão no epitélio dos pacientes com leishmaniose e não houve expressão de TLR9. A média de células expressando TLR2 na derme foi de 136,36±82,46 células/mm2, ao passo que a média de células expressando TLR4 foi de 3,21±4,11 células/mm2. A contagem de TLR9 foi de 86,15±88,36 células/mm2 predominando em áreas de formação de granulomas. A regressão linear não demonstrou relação entre a contagem de células marcadas ou citocinas com TLR2 ou TLR4. O aumento proporcional da expressão de TLR9 relacionou-se com maior expressão de IL-12 e IL-4 (p < 0,05). A dupla marcação demonstrou que os macrófagos expressaram TLR2. A dupla marcação não mostrou expressão de TLR2 nas células dendríticas e nas células NK. Conclusão: A leishmaniose cutânea localizada associa-se com a presença de TLR2, TLR4 e TLR9. No epitélio a expressão de TLR2 e TLR4 em pacientes com leishmaniose está diminuída em relação aos pacientes controles. A expressão do TLR2 na derme é estatisticamente maior que a de TLR4 e TLR9, a qual é expressa pelos macrófagos. A expressão de TLR9 ocorre principalmente nas áreas de granulomas havendo relação com a expressão de IL-12 e IL-4 / Introduction: One of the first systems of defense against microorganisms is the Toll-like receptors (TLRs) pathway. The activation of these receptors promotes the cytokine synthesis, initiating the innate immune response. In animal models, TLR2, TLR4 and TLR9 appear to be related to the recognition of antigens of Leishmania. The relationship between TLRs and Leishmania can be a key mechanism in the development of the disease or it control. Until now, there are not studies about TLRs in human cutaneous leishmaniasis. Objective: To determine the expression pattern and the cells associated with TLR2, TLR4 and TLR9 in cutaneous leishmaniasis. The secondary objective is to correlate the amount of TLRs with the amount of cytokines and inflammatory cells. Methods: One hundred biopsies from patients with cutaneous leishmaniasis caused by Leishmania (V.) braziliensis were initially selected. Only confirmed cases of cutaneous leishmaniasis were included in the analysis (presence of amastigotes in the scraping, positive Montenegro test, immunohistochemistry with the presence of Leishmania antigens and polymerase chain reaction with DNA from Leishmania (V.) braziliensis. A control group (4 cases) of normal skin was included for comparison. The expression of TLR2, TLR4 and TLR9 was determined by immunohistochemistry, as well as cell phenotypes (NK cells, macrophages, dendritic cells, CD4 and CD8) and cytokines (IL-1, IL-6, IL-12, TNF-alpha, IFN-gamma). Double-staining was used to determine the cells expressing TLRs. Semi-quantitative analysis was used for evaluation of the expression of TLRs in the epidermis. Quantitative analysis was performed to evaluate the expression in the dermis. The level of significance was defined as p <0.05. Results: 12 cases fulfilled inclusion criteria. The patients were all male, with lesions in lower limbs and median age of 23 years [16-47]. The expression of TLR2 and TLR4 in the epidermis of normal skin was high. When compared with normal skin, TLR2 and TLR4 showed lower expression in the epidermis. There was no expression of TLR9 in the epidermis in cases of cutaneous leishmaniasis and normal skin. The mean number of cells expressing TLR2 in the dermis was 136.36±82.46 cells/mm2, while the average of cells expressing TLR4 was 3.21±4.11 cells/mm2. The count of TLR9 was 86.15±88.36 cells/mm2, and it was found mainly in the areas of granuloma formation. Linear regression showed no relationship between the number of labeled cells or cytokines with TLR2 or TLR4. There was an association between TLR9 and two cytokines (IL-12 and IL-4). This correlation suggested that the proportional increase in the expression of TLR9 was related to greater expression of IL-12 and IL-4 (p<0.05). The double staining showed that macrophages and endothelial cells expressed TLR2. The double staining showed no expression of TLR2 in dendritic cells and NK cells. Conclusion: The localized cutaneous leishmaniasis associated with the presence of TLR2, TLR4 and TLR9. The expression of TLR2 in the dermis was statistically greater than that of TLR4 and TLR9, which is expressed by macrophages. The expression of TLR9 occurs primarily in the areas of granulomas was associated with the expression of IL-12 and IL-4

Os macrófagos (MO) são populações heterogêneas de células residentes em diversos tecidos, onde iniciam a resposta imune através do reconhecimento de padrões moleculares de patógenos. Para avaliar a modulação funcional dessas populações, MO peritoneais (PM) e alveolares (AM), com perfil M1 e M2, foram ativados in vivo por flagelina (FliCi) e lipopolissacarídeos bacterianos (LPS). Esse trabalho mostra que o microambiente parece influenciar a resposta diferencial das populações de MO, uma vez que a expressão de MHCII, CD80, CD86 e CD40 e produção de NO por PM são mais intensamente modulados por FliCi, enquanto os AM são mais sensíveis ao LPS. Porém, dentro da população de PM, encontramos duas subpopulações distintas, nomeadas F4/80hi e F4/80lo. A população F4/80hi parece adquirir um perfil M1 após estimulo com FliCi, com alta expressão de iNOS, enquanto a população F4/80sup>lo apresenta um perfil M2, com maior expressão basal de mTGF-ß, indicando que a heterogeneidade dos MO também pode estar expressa no mesmo microambiente. / Macrophages (MO) are a heterogeneous cell population that resides in distinct tissues, where they trigger the immune response through the recognition of pathogen-associated molecular patterns. To evaluate the functional modulation of these populations, peritoneal (PM) and alveolar (AM) MO, from M1 and M2 profile, were in vivo activated by flagellin (FliCi) and bacterial lipopolysaccharide (LPS). In this study we show that microenvironment seems to influence the differential responses of MO populations, since MHCII, CD80, CD86 e CD40 expression and NO production by PM are more intensely modulated by FliCi whereas AM are more sensitive to LPS. However, we found two distinct subpopulations within PM, named F4/80hi e F4/80lo. cells show a M1 profile after FliCi stimulation, with high iNOS expression of mTGF-ß, indicating that the MO heterogeneity can also be finding in the same microenvironment. NOS expression, and F4/80lo population presents a M2 profile, with higher basal expression of mTGF-ß, indicating that the MO heterogeneity can also be finding in the same microenvironment

Une reconnaissance appropriée des parasites est essentielle pour une réponse immunitaire efficace, assurant l'activation adéquate des mécanismes de défense immunitaire. Chez les vertébrés, il a été démontré que les gènes codant pour les récepteurs de l'immunité adaptative impliqués dans la reconnaissance des agents pathogènes sont soumis à une intense pression sélective. En revanche, beaucoup moins d’études se sont intéressées à la sélection agissant sur les récepteurs de l'immunité innée. Le but de cette thèse est de décrire la variabilité naturelle des gènes de l'immunité innée impliqués dans la détection des agents pathogènes chez les rongeurs et d’analyser les mécanismes responsables de leur évolution. Ce travail s’est focalisé principalement sur les rongeurs de la sous-famille des Murinae et de leur rôle potentiel en tant que réservoirs d’agents pathogènes dangereux pour l’Homme. Tout d´abord nous avons étudié la variabilité intraspécifique de cinq Toll-like récepteurs ciblant les bactéries (TLR1, TLR2, TLR4, TLR5 et TLR6) pour des lignées consanguines de souris domestiques issues d’une population sauvage de deux sous-espèces : Mus musculus domesticus (Mmd) et Mus musculus musculus (Mmm). Les souches consanguines constituent un outil adapté à l'étude de la variabilité des gènes immunitaires car elles confèrent une information sur les allèles présents dans les populations naturelles tout en bénéficiant de génotypes homozygotes. Les résultats les plus significatifs concernent la découverte d'un codon stop dans l'exon 2 du Tlr5 chez une lignée de Mmm et l’absence de variabilité du Tlr4 chez Mmd. A la suite de ces résultats, nous avons décidé de vérifier si l‘absence de polymorphisme du Tlr4 chez Mmd reflète une absence de variabilité dans les populations naturelles, ou si il s’agit plutôt d’un effet de l'échantillonnage ou des croisements ultérieurs. Nous avons donc séquencé le gène Tlr4 pour les deux sous-espèces provenant de la région du Paléarctique Occidentale (au total 39 Mmm et 62 Mmd) puis nous avons comparé ces résultats avec la variabilité génétique d’un gène mitochondrial (cytochrome b). Nous avons confirmé notre prédiction : la variabilité de Tlr4 chez Mmd est fortement réduite par rapport à Mmm, probablement à cause d’agents pathogènes ayant exercé une sélection purifiante chez Mmd durant la colonisation vers l’ouest. Cependant, l'influence de mécanismes évolutifs neutres, tel que la dérive consécutive à un goulot d’étranglement démographique, ne peut être exclue sur la base de nos données. La dernière partie a été consacrée à la comparaison interspécifique de deux récepteurs : TLR4 et TLR7. Ces deux TLRs se différencient à la fois par leur localisation et leur capacité de détection. TLR4 est un TLR extracellulaire reconnaissant principalement les ligands bactériens, essentiellement les lipopolysaccharides, tandis que TLR7 est localisé dans la cellule et détecte les virus à ARN simple brin. L‘objectif était de décrire la variabilité inter-spécifique de chaque récepteur et de révéler les mécanismes de sélection s’exerçant sur ces gènes au cours de leur évolution sur une échelle de temps plus importante. Nous avons analysé 23 espèces de Murinae provenant surtout d’Asie. Nos résultats suggèrent que la sélection purifiante est la force principale ayant agit sur l’évolution des deux TLRs. Cependant, nous avons également mis en évidence des épisodes de sélection diversifiante qui ont pu être à l’origine des variations intra-spécifiques de TLRs observée aujourd’hui chez les rongeurs. Des sites sous sélection positive sont principalement concentrés dans les domaines extracellulaires des deux récepteurs, domaines responsables de la reconnaissance des agents pathogènes. Enfin, la comparaison entre ces deux TLRs montre que le TLR7 est soumis à une sélection négative plus forte. Cette sélection peut s’expliquer en raison des interactions du TLR7 avec les acides nucléiques viraux. / Appropriate recognition of parasites is crucial for effective immune response, ensuring activation of adequate defence mechanisms. In vertebrates, it has frequently been demonstrated that genes encoding proteins involved in pathogen recognition by an adaptive immune system are often subject to intense selection pressures. On the contrary, much less information has been provided on the evolution of recognition mechanisms of innate immunity. The aim of this thesis is to describe the pattern of natural variation of innate immunity genes involved in pathogen recognition in rodents and to analyze the mechanisms of their evolution. We used murine rodents (subfamily Murinae) as a principal model group because they are potential reservoirs of various pathogens dangerous to humans. First, we studied the intraspecific variability of five bacterial sensing Toll-like receptors (TLR1, TLR2, TLR4, TLR5, and TLR6) in inbred strains derived from two subspecies of the house mouse (M. m. musculus, hereafter abbreviated as Mmm and Mus musculus domesticus, Mmd). Wild-derived inbred strains are suitable tools for studying variation of immunity genes because they provide information about alleles that occur in natural populations, and at the same time they occur at homozygous state. The most significant results include the findings of a stop codon in exon 2 of the Tlr5 gene in one Mmm strain and no variability in Tlr4 of Mmd. Following these results we decided to check whether the absence of Tlr4 polymorphism in Mmd reflects the pattern found in natural populations, or whether it is a consequence of insufficient sampling or subsequent breeding. We therefore sequenced Tlr4 in both subspecies across a large part of the Western Palearctic region (in total 39 Mmm and 62 Mmd individuals), then we compared these results with variability on mitochondrial DNA (cytochrome b). The result confirmed our prediction that observed variability in Mmd is strongly reduced also in free-living populations (compared to Mmm), probably due to strong purifying selection by pathogens with which they met during the westward colonization. However, the influence of random evolutionary processes (e.g. drift during bottlenecks) cannot be excluded based on our data. At the intraspecific level, we could not find any sign of positive selection. The last part of my dissertation is devoted to interspecific comparison of two receptors, TLR4 and TLR7. These two TLRs differ in the exposure and the ligands detection. TLR4 is an extracellular receptor detecting mainly bacterial ligands (especially lipopolysaccharides), while TLR7 is located inside the cell and detects ssRNA viruses. The aim of this part of the thesis was to describe variability of both receptors at the interspecific level and to reveal selection forces acting on TLRs in longer evolutionary time scale. In total we analyzed 23 rodent species of the subfamily Murinae in Europe, Asia and Africa. Our results suggest that purifying selection has been a dominant force in evolution of the Tlr4 and Tlr7 genes, but we also demonstrated that episodic diversifying selection has shaped the present species-specific variation in rodent Tlrs. Sites under positive selection were concentrated mainly in the extracellular domain of both receptors, which is responsible for ligand binding. The comparison between two TLRs lead us to the conclusion that the intracellular TLR7 is under much stronger negative selection pressure, presumably due to its interaction with viral nucleic acids.

B cells recognise antigens on micro-organisms through their B cell receptor (BCR) and via Toll-like receptors (TLRs), and thus respond in both innate and adaptive manners during the subsequent immune response. Innate recognition through TLRs has the potential to alter the behaviour of whole B cell populations. I show, here, that MyD88-dependent activation of B cells via TLR2 or TLR9 causes the rapid loss of expression of CD62L, by metalloproteinasedependent shedding, resulting in the exclusion of these cells from lymph nodes and Peyer’s patches, but not the spleen. Moreover, systemic infection with Salmonella typhimurium causes shedding of CD62L and the subsequent focussing of B cell migration to the spleen. I reveal that splenic B cells undergo further changes during S. typhimurium infection, including TLR-dependent differentiation of marginal zone B cells into IgM-secreting plasma cells. Together, these TLR-mediated alterations to B cells are likely to influence the development of immunity to pathogens carrying the appropriate ligands. In addition to these innate responses of B cells, endocytosis of cognate antigen through their BCR allows antigen presentation. This, together with their ability to secrete cytokines, means they have the potential to drive T helper cell responses. I investigate the role of B cells in such CD4+ T cell responses by following antigen-specific T cells in vivo, using both a peptide immunisation strategy and the S. typhimurium infection model. I use anti-CD20 B cell depletion antibodies to deplete B cells at various stages of the immune response, and analyse the effects on T follicular helper and memory cell populations. I show that both the generation and maintenance of T follicular helper cells is dependent on the presence of B cells. Furthermore, I demonstrate that B cells are necessary very early in immune responses, during the first 10 days, for efficient generation of memory T cells.

In the post smallpox era, vaccinia virus (VACV) has emerged as an important candidate vaccine vector. As yet, the binding receptors and entry mechanisms utilised by the two infectious forms, IMV and EEV, in dendritic cells (DCs) are unknown. We have investigated the interactions between VACV and C-type lectin receptors (CLRs) that are known to be utilised by many other viruses for binding and entry in DCs. Using a variety of CLR ligands and inhibitors we were unable to inhibit IMV or EEV binding to MDDCs and we conclude that they do not bind to CLRs. We have also investigated VACV entry in MDDCs and show that both IMV and EEV enter MDDCs via an endocytic pathway. Using a variety of drugs that inhibit cellular processes we found IMV and EEV entry to be actin- and calcium-dependent. EEV entry was also cholesterol- and energy-dependent, whereas IMV entry was only partially dependent on these factors. Both IMV and EEV colocalised with endolysosomal markers. This data suggests that EEV may enter DCs via caveolin-mediated endocytosis whereas IMV entry can occur via multiple complementary mechanisms, including endocytosis and fusion. Macropinocytosis may also constitute a minor route of entry for IMV as entry was partially inhibited by dimethyl amiloride and the virus colocalised with dextran. Finally we have provided a comprehensive flow cytometric analysis of Toll-like receptor (TLR) expression at the protein level in MDDCs and monocyte-derived Langerhans cells (MDLCs) as models for different myeloid DC subsets. We found TLR expression to be cell type-specific and MDDCs expressed the full repertoire of TLRs 1-9, including small amounts of TLR8 and TLR9 on the cell surface. The expression of these TLRs that recognise nucleic acids on the surface of cells may constitute an early warning system for signalling the presence of viral invaders that would normally subvert the function of DCs. We also found TLR expression in mature cells to be dependent on the nature of the maturation stimulus (lipopolysaccharide versus cytokine/prostaglandin cocktail) and VACV infection induced profound down-regulation of all TLRs. These findings will have important implications for the rational design of VACV-vectored vaccines.

京都大学 / 新制・課程博士 / 博士(医学) / 甲第24194号 / 医博第4888号 / 京都大学大学院医学研究科医学専攻 / (主査)教授 生田 宏一, 教授 伊藤 能永, 教授 中川 一路 / 学位規則第4条第1項該当 / Doctor of Medical Science / Kyoto University / DFAM