Equine Herpesvirus type 1 (EHV-1) is a worldwide threat to the health of horses. It can cause mild respiratory disease, abortions and deaths of newborn foals as well as a potentially fatal neurologic disorder known as Equine Herpesvirus Myeloencephalopathy (EHM). The virus is maintained in populations by stress-induced periodic reactivation of virus in long-term latently infected horses and transmission of the reactivated virus to susceptible individuals. In horses, peripheral blood leukocytes (PBLs) are thought to be an important site for EHV-1 latent genomes. Since the Unfolded Protein Response (UPR) is a cellular response to a variety of stressors that has been linked to reactivation of herpes simplex virus in humans, a virus closely related to EHV-1, I tested the hypothesis that latent EHV-1 relies on the UPR as a pluripotent stress sensor and uses it to reactivate lytic gene expression. Since little work has been done in defining the UPR in horses, I first successfully developed a quantitative real-time polymerase chain reaction (RT-qPCR) assay to detect and quantitate transcripts for selected UPR genes in equine dermal (E.Derm) cells and PBLs. Activation of the UPR was achieved in both cell types using thapsigargin and a difference in gene expression after activation of the UPR in two equine cell types was found. A nested PCR assay to detect and distinguish latent EHV-1 and EHV-4 was evaluated and the sensitivity of the technique to detect EHV-1 was determined. I discovered that the nested PCR technique was not sensitive enough to detect the estimated one latent viral genome in 50,000 PBLs. Lytic EHV-1 infection was characterized by single step growth curve in E.Derm cells and consistent detection of temporal EHV-1 gene expression by RT-qPCR was achieved. The relationship between EHV-1 gene expression and UPR gene expression during lytic infection was investigated. While EHV-1 infection had no effect on UPR gene expression, activation of the UPR appeared to decrease the expression of EHV-1 genes temporarily and reversibly during the first 4 h after infection. Finally, detection of EHV-1 in PBLs from horses presumed to be latently infected by co-cultivation with E. Derm cells permissive to EHV-1 infection was attempted. To detect viral DNA, PBLs were stimulated with thapsigargin or interleukin 2 (IL-2) which was previously reported to induce reactivation of latent EHV-1. I was not able to reproduce previously published experiments of reactivation in vitro of latent EHV-1 by stimulation with IL-2, and virus reactivation did not occur after stimulation of PBLs with thapsigargin. In summary, a RT-qPCR assay to measure the expression of equine UPR genes was developed and activation of the UPR by treatment of E.Derm cells and PBLs with thapsigargin was successfully achieved. A difference in gene expression after activation of the UPR in two equine cell types was found. In contrast to what has been reported for other alphaherpesviruses, there appears to be no, or only little, interaction between the UPR and EHV-1 during viral infection. Detection of latent EHV-1 genomes in PBLs was not achieved by using a nested PCR, as this technique was not sensitive enough to detect the estimated one latent viral genome in 50,000 PBLs. Finally, latent EHV-1 was not detected in presumed latently infected PBLs or reactivated by triggering the UPR in equine PBLs.

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La mucoviscidose est une maladie causée par des mutations du gène cftr entraînant des défauts importants de la protéine CFTR. La mutation la plus fréquente (F508del) est caractérisée par un repliement incorrect conduisant à la rétention de la protéine dans le RE.L’accumulation de CFTR-F508del dans le RE, l’inflammation et les infections vont déclencher un stress du RE dans les cellules épithéliales ainsi que l’UPR. Cette dernière est une réponse adaptative déclenchée par le stress du RE et permet de rétablir l’homéostasie de ce compartiment. L’UPR est constituée de trois voies majeures dont l’une d’entre elles est activée dans les cellules exprimant un CFTR-F508del. Il s’agit de la voie ATF6 qui est de plus responsable de la répression transcriptionnelle du CFTR, ce qui en fait une cible thérapeutique potentielle. Nous avons montré que son inhibition conduit à l’amélioration de la fonction duCFTR-F508del et à l’augmentation de sa présence à la membrane des cellules.Nous nous sommes également intéressés au Mg2+ et au TRPM7, le régulateur principal de la [Mg2+]i dans les cellules. Nous avons émis l’hypothèse que TRPM7 était en partie responsable de l’activation d’ATF6 dans les cellules exprimant un CFTR-F508del. Le but de cette seconde partie du projet était donc tout d’abord d’étudier la relation existante entre le Mg2+, TRPM7 et le CFTR. Nous avons montré qu’il existait des différences de [Mg2+]i selon le type de mutation du CFTR exprimé par les cellules. Ces différences sont en partie dues à un défaut d’activation de TRPM7, lui-même probablement lié à un défaut du CFTR. En augmentant l’activité de TRPM7 par du Naltriben, nous avons pu montrer un effet potentialisant sur leCFTR-G551D. / Cystic fibrosis is caused by mutations in the cftr gene resulting in several defaults on the CFTR protein. The most frequent mutation is F508del which is characterized by an incorrect folding causing its retention within the ER. CFTR-F508del protein accumulation in the ER, inflammation and infections will trigger the ER stress in epithelial cells, as well as UPR. UPR constitutes an adaptive response of the ER in order to restore ER’s homeostasis. UPR consists in three major pathways. Among them, one is activated in cells expressing CFTR-F508del protein. The ATF6 pathway of UPR is responsible of the transcriptional repression of CFTR, which makes of it a potential therapeutic target. We showed that the inhibition of ATF6 leads to the improvement of CFTR-508del function, as well as its increased presence in the cellular membrane. We were also interested in Mg2+ and TRPM7, the main regulator of [Mg2+]i. We suspected that TRPM7 is, at least in part, responsible for the activation of ATF6 in cells expressing the mutant CFTR-F508del. Thus, the second part of my work was focused on the study of the relationship between Mg2+, TRPM7 and CFTR. We showed the existence of [Mg2+]I differences according to CFTR mutant expressed in cells. These differences are the result of an altered TRPM7 activation, probably in link with the mutated CFTR’s malfunction. We proved that increasing TRPM7 activity by Naltriben treatment potentiates CFTR-G551D.

Mutations in the COL10A1 gene cause metaphyseal chondrodysplasia type Schmid (MCDS) by triggering ER stress and unfolded protein response (UPR). MCDS is characterised by a mild short-limb dwarfism accompanied by expansion of the cartilage growth plate hypertrophic zone (HZ) and altered differentiation of hypertrophic chondrocytes (HCs). ATF6 is one of the UPR mediators, which exists in two isoforms, ATF6α and ATF6β. Activation and up-regulation of ATF6α was a prominent biochemical sign of ER stress in a mouse model of MCDS, COL10a1 p.N617K. Although ATF6β is induced and activated in response to ER stress in a similar fashion to ATF6α, the role and significance of ATF6β in the pathology of many ER stress-associated diseases including MCDS is unknown. Here we utilized a combination of in vitro and in vivo approaches to define the precise role of each isoform of ATF6 in MCDS.To investigate the functions of ATF6α and ATF6β in vitro, we developed a MCDS cell model system (expressing either the wild type collagen X or one of the following MCDS-causing mutant forms of the protein: p.N617K, G618V, Y598D, and NC1del10) in which the expression of either ATF6α or ATF6β was efficiently silenced using siRNAs. ATF6α knockdown in HeLa cells expressing different MCDS-causing mutations suppressed the increased expression of UPR-associated genes such as BiP leading to an elevated ER stress, based on increased XBP1 splicing and/or ATF4 protein. In contrast, ATF6β knockdown did not significantly affect the mutant collagen X-induced increased expression of UPR-associated genes. Furthermore, the ER stress levels were significantly reduced in the ATF6β knockdown MCDS mutant cells based on the lower levels of XBP1 splicing and/or ATF4 protein detected. We then crossed the ATF6α/β knockout mice models with COL10a1 p.N617K mouse model of MCDS to investigate the function of ATF6α and ATF6β in vivo. Ablation of ATF6α in MCDS mice further- reduced the endochondral bone growth rate, further expanded the growth plate hypertrophic zone, and disrupted differentiation of HCs. Therefore, ATF6α appeared to play a chondroprotective role in MCDS as its deficiency caused an increase in the severity of the disease. Of particular note, the level of ER stress was further increased in the absence of ATF6α in MCDS, based on enhanced activities of PERK and IRE1 signalling pathways in compensation for the ATF6α loss. Paradoxically, ablation of ATF6β in MCDS mice reduced the intracellular retention of collagen X protein, and alleviated the ER stress as judged by the attenuated activities of PERK and IRE1 signalling pathways. The reduced ER stress resulting from deficiency for ATF6β in MCDS mice restored the expression of collagen X mRNA towards normal and improved the differentiation of HCs, causing a mark decrease in the expansion of HZ. The results presented within this thesis greatly increased our understanding of the function of ATF6α and ATF6β and their interplay in the pathogenesis of MCDS. We demonstrated an indispensable beneficiary role for ATF6α but a detrimental role for its closely related isoform, ATF6β, in pathology of MCDS. We also showed that the role of ATF6β should not be ignored. These findings may be used to develop a potential therapeutic strategy for MCDS through targeting and enhancing ATF6α-dependent and/or attenuating/blocking of ATF6β-dependent signalling pathways.

Le diabète de type 2 (DT2) est une pathologie largement associée à l'obésité dont la prévalence est en constante augmentation dans le monde. L'inflammation et le stress du réticulum endoplasmique (RE) ont été largement décrits pour leur rôle dans la pathogénèse du DT2 en favorisant une insulinorésistance des tissus périphériques et une altération de la sécrétion d'insuline par le pancréas. La protéine Thioredoxine Interacting Protein (TXNIP) est activée lors d'un stress RE et joue un rôle important dans la mise en place de la réponse inflammatoire en activant l'inflammasome NLRP3 (Nod-Like Receptor 3). Nous nous sommes donc intéressés au rôle de cette protéine dans les monocytes des patients DT2. Nous montrons que la composition lipidique du plasma des patients DT2 pourrait être impliquée dans la mise en place d'un stress RE et d'une réponse UPR (Unfolded Protein Response) augmentée dans les monocytes de ces patients. Cette augmentation est associée à une activation de l'expression de TXNIP et des marqueurs de l'inflammation dans ces cellules qui pourrait participer à la mise en place d'une inflammation systémique chez ces patients. / Type 2 diabetes (T2D) is a pathology largely associated with obesity, which is rising constantly around the world. Inflammation and endoplasmic reticulum (ER) stress have been largely associated with the pathogenesis of DT2, promoting insulin resistance in peripheral tissues and a defect in insulin secretion from the pancreas. During ER stress the Thioredoxin Interacting Protein (TXNIP) is activated and plays an important role in the onset of inflammatory responses by activating the NLRP3 (Nod-Like Receptor 3) inflammasome. Hence we studied the role of TXNIP in monocytes from T2D patients. We have shown that the plasmatic lipid composition from T2D patients could be implicated in the onset of ER stress and an increase in the UPR (Unfolded Protein Response) in monocytes from T2D patients. This increase is associated with an activation of TXNIP expression and inflammatory markers in these cells, which could participate to the onset of systemic inflammation seen in T2D.

Le rotavirus est le principal agent étiologique des gastro-entérites infantiles. Après l'assemblage dans le réticulum endoplasmique (RE), les virions sont relargués au niveau du pôle apical des entérocytes selon une voie de trafic atypique ne passant pas par l'appareil de Golgi. Ce travail a pour but d'étudier les mécanismes de sortie du RE et le trafic atypique du rotavirus. Des acteurs de la machinerie réticulaire de repliement et de contrôle qualité des protéines ont été retrouvés associés aux intermédiaires d'assemblage du rotavirus. En corrélation avec cela, l'infection provoque un stress du RE et active une réponse cellulaire spécifique, l'Unfolded Protein Response (UPR). Le rotavirus module de manière différentielle les trois voies de signalisation de l'UPR et seules les voies IRE1 et PERK sont requises pour la morphogénèse virale. L'autophagie, en dehors de son rôle dans la dégradation du matériel cellulaire, a été récemment impliquée dans des voies de sécrétion non conventionnelles. Dans les cellules épithéliales intestinales Caco-2, la différenciation cellulaire se manifeste par l'augmentation de l'expression des marqueurs autophagiques et la diminution du flux autophagique. Quelque soit l'état de différenciation des cellules, l'infection à rotavirus bloque à la fois la formation et la maturation des autophagosomes. Uniquement dans les cellules Caco-2 non différenciées, l'infection induit une lipidation de LC3 qui n'est pas associée à l'autophagie, mais qui corrèle avec un clivage de la protéine ATG3 impliquée dans le processus de lipidation. Ni l'autophagie, ni la lipidation de LC3 ne sont requises pour la morphogénèse du rotavirus dans les cellules Caco-2. / Rotavirus is the major causative agent of severe gastroenteritis in young children worldwide. After assembly steps in the Endoplasmic Reticulum (ER), virions are released without any cellular lysis at the apical side of enterocytes, following an atypical trafficking pathway that bypasses the Golgi apparatus. This work is aimed at understanding the mechanisms of ER exit of rotavirus particles as well as their unconventional trafficking. Components of the protein folding and quality control machinery in the ER were found associated with viral assembly complexes. Consistent with this observation, viral infection induced ER stress, which activates a specific cellular response named the Unfold Protein Response (UPR). Rotavirus infection modulated differently the three UPR signaling pathways and only the IRE1 and PERK pathways were required for viral morphogenesis. Autophagy, besides being a degradative process, has recently been shown to be potentially involved in unconventional secretion pathways. We showed that the differentiation process of human intestinal epithelial Caco-2 cells into enterocyte-like phenotype was marked by the increase in expression of autophagic markers and the reduction of autophagic flux. Rotavirus infection blocked both the initiation and late steps of autophagy, in both undifferentiated and differentiated Caco-2 cells. Surprisingly, only in undifferentiated Caco-2 cells, rotavirus infection induced a lipidation of LC3 that was not associated with autophagy but correlated with a cleavage of ATG3, a protein directly involved in the lipidation process. Neither autophagy nor the lipidation of LC3 were required for rotavirus morphogenesis in Caco-2 cells.

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Puerto Rico has been under influence and colonial rule by the United States since the Spanish-American War of 1898. This has led the island to have partial and limited control over the affairs inside it. The passing of Hurricane Maria on September 20th of 2017 exposed problems even further. Puerto Rico remains under the control of a Financial Oversight and Management Board since the passing of the PROMESA act (The Puerto Rico Oversight, Management, and Economic Stability Act) signed by President Barack Obama in 2016. This had forced Puerto Rico to make drastic cuts to its public services. One of the main services was has been its public university, The University of Puerto Rico. This study provides a critical analysis of the reality of college students staying in Puerto Rico and continuing their studies in the UPR. Ten interviews have been completed. These semi-structured qualitative interviews provided themes that can be studied to create and inspire further research and eventually influence policies that can better the quality of life of these students. The data points to mental health issues, limited opportunities in research and internships, post-hurricane experience, structural problems to the university (physical and bureaucratic), amongst others. There are also signs of resilience and community support. Analysis of the themes through the transcription and data coding have provided insight to steps that can be taken at UCF’s Puerto Rico Research Hub that can extend to Central Florida and the island itself.

Cigarette smoke contributes to 90% of lung cancer cases and 80% of COPD cases. These concerns loom large as lung cancer represents 13% of all cancer deaths and estimates report by 2020 COPD will be the third leading cause of death in the world. The master regulator of the ER stress response, IRE-1, in the context of cigarette smoke exposure lacks study. Interestingly, its downstream pathways are activated. In fact, the 2014 Surgeon General’s report on the health consequences of smoking highlighted the endoplasmic reticulum (ER) stress response as a potential mechanism leading to the development of lung cancer and Chronic Obstructive Pulmonary Disorder (COPD). Following acute cigarette smoke exposure, mouse lung homogenates exhibited increased levels of XBP-1 along with downstream mediators of IRE-1 activation— GRP-78 and CHOP. Specifically observing macrophages, an important immune cell and source of acute inflammation, cigarette smoke induced activation of IRE-1/XBP-1 pathway through splicing of XBP-1 mRNA. However, upon assaying for pro-inflammatory cytokines we were unable to determine that cigarette smoke directly caused inflammation in vitro. Furthermore, cigarette smoke inhibited the activation of M2 macrophages, an anti-inflammatory and tissue healing subset seen through CCL18 inhibition. A majority of M2 and M1 macrophage markers were decreased from IRE-1/XBP-1 inhibition. This suggests a different phenotype than classical M1 or M2 polarization being induced by cigarette smoke. In addition, it suggests the IRE-1/XBP-1 pathway having a robust role in controlling gene expression and balance of cellular proteomics. / Thesis / Master of Science (MSc) / Cigarette smoke exposure damages the lungs and over time places the user at risk for increased infections, progressive decreases in lung function and cancer. A specific cell of the immune system and found in the lungs, macrophages or “Big Eater” cells, responds first by picking up debris and responding to harmful foreign substances by releasing proteins signaling the immune system to become activated. Within all animal cells, an organelle called the Endoplasmic Reticulum (ER) manufactures a third of proteins produced allowing the cell to adapt to foreign substances, including cigarette smoke. Cigarette smoke could cause the ER, a plastic organelle, to change in size and function at a heightened level due to activation of a sensing protein integrated in the ER, Inositol Requiring Enzyme-1 (IRE-1). Both activation of the ER and cigarette smoke causes macrophages to behave as “tissue-healing” or M2 subsets that release factors promoting reconstruction of the lungs; alternatively, M1 macrophages fight diseases and promote further inflammation. Using genetic analysis of macrophages exposed to cigarette smoke in culture dishes and analyzing the proteins secreted, we determined cigarette smoke inhibits M1 macrophages and the “tissue-healing” subset, while increasing adhesion molecule expression. Overall, cigarette smoke affected the polarization of M1 and M2 phenotype, analyzed through proteins and genes expression. We observed an increase in sXBP-1, indicative of IRE-1/XBP-1 pathway activation, from cigarette smoke extract exposure in macrophages. However, the use of IRE-1 inhibitors increased ER stress markers while affecting M1 and M2 markers. This suggests ER compensation from the use of inhibiting one arm of the ER stress response.