The soybean cyst nematode (SCN), Heterodera glycines, a plant parasitic pest, causes severe yield losses of soybean (Glycine max). Although a number of studies have identified various genes that function in defense, including a role for the vesicular transport machinery acting against H. glycines in infected roots, a regulatory mechanism occurring behind the transcriptional engagement of the vesicular transport system and delivery of the transported cargo proteins is not fully understood. The main goal of the current study is to determine the functional effect of genetically engineering the circadian clock gene, CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) in G. max to examine a role on H. glycines parasitism. The outcome of the study has determined the functional effect of main clock component CCA1-1 along with other oscillator genes such as TIMING OF CAB 1 (TOC1-1), GIGANTEA (GI-1) and CONSTANS (CO-4) to enhance resistance against H. glycines parasitism. Further, the reduced level of the expression of Gm-CCA1-1 in infected roots, in comparison to uninfected roots, has demonstrated that clock components might have arrested and altered its expression during the nematode infection process. The study has also investigated the role of XYLOGLUCAN ENDO-TRANSGLYCOSYLASE /HYDROLASE (XTH), Gm-XTH43, during the resistance process soybean has to H. glycines. The results have demonstrated higher xyloglucan (XyG) amounts to be synthesized in the Gm-XTH43 overexpressing (OE) lines. In contrast, there is less XyG in the Gm-XTH43 RNA interference (RNAi) lines that have a negatively regulated XTH gene. These observations have led to elucidating the role in the potential cell wall rearrangement and the underlying metabolic processes required for the generation of the proper XyG architecture required for defense occurring outside of the plant cell. Furthermore, the observed result of lower level of weight average molecular weight (WAMW) of XyG in Gm-XTH43-OE and higher MW of XyG in Gm-XTH43-RNAi than respective control roots have demonstrated a key role in, presumably, changing the cell wall by the remodeling of the XyG chain as it relates to the cell wall architecture.

Biopolymers from renewable resources are of interest for packaging applications as an alternative to conventional petroleum-based polymers. One of the major application areas for biopolymers is food packaging, where a candidate polymer should meet critical requirements such as mechanical and oxygen barrier performance, also in humid conditions. Starch has long been used in certain packaging applications, either in plasticized state or blended with other polymers. However, native starch has high sensitivity to water and low mechanical and barrier performance. Recently, wood-derived hemicelluloses have been extensively studied as oxygen barrier films, but suffer from low film-forming ability and mechanical performance. In the present study, xyloglucan (XG) from tamarind seed waste is explored as an alternative high-performance biopolymer in packaging applications. The obstacles of polysaccharides in terms of moisture sensitivity and processability are addressed in this thesis. In Paper I, film properties of XG were studied. XG has a cellulose backbone, but unlike cellulose, it is mostly soluble in water forming highly robust films. Moisture sorption isotherms, tensile tests and dynamic mechanical thermal analysis were performed. Enzymatic modification (partial removal of galactose in side chains of XG) was performed to study the effect of galactose on solubility and filmforming characteristics. XG films showed lower moisture sorption than starch. Stiffness and tensile strength were very high of the order of 4 GPa and 70 MPa respectively, with considerable ductility and toughness. The thermomechanical performance was very high with a softening temperature near 260 ºC. In Paper II, several plasticizers were studied in order to facilitate thermal processing of XG films: sorbitol, urea, glycerol and polyethylene oxide. Films of different compositions were prepared and studied for thermomechanical and tensile properties. Highly favorable characteristics were found with XG/sorbitol system. A large drop in glass transition temperature (Tg) of XG of the order of 100 ºC with 20 - 30 wt% sorbitol was observed with an attractive combination of increased toughness. In Paper III, XG was chemically modified and the structure-property relationship of modified XG studied. XG modification was performed using an approach involving periodate oxidation followed by reduction. The oxidation is highly regioselective, where the side chains of XG are mostly affected with the cellulose backbone well-preserved as noticed from MALDI-TOF-MS and carbohydrate analysis. Films were cast from water and characterized by dynamic mechanical thermal analysis, dynamic water vapor sorption, oxygen transmission analysis and tensile tests. Property changes were interpreted from structural changes. The regioselective modification results in new types of cellulose derivatives without the need for harmful solvents. In Paper IV, moisture durability of XG was addressed by dispersing montmorillonite (MTM) platelets in water suspension. Oriented bionanocomposite coatings with strong in-plane orientation of clay platelets were prepared. A continuous water-based processing approach was adopted in view of easy scaling up. The resulting nanocomposites were characterized by FE-SEM, TEM, and XRD. XG adsorption on MTM was measured by quartz crystal microbalance analysis. Mechanical and gas barrier properties were measured, also at high relative humidity. The reinforcement in mechanical properties and effects on barrier properties were remarkable, also in humid conditions. In Paper V, cross-linked XG/MTM composite was prepared with high clay content (ca. 45 vol%) by an industrially scalable “paper-making” method. Instead of using cross-linking molecules, cross-linking sites were created on the XG chain by selective oxidation of side chains. The in-plane orientation of MTM platelets were studied using XRD and FE-SEM. The mechanical properties and barrier performance were evaluated for the resulting 'nacre-mimetic' nanocomposites. The elastic modulus of cross-linked nanocomposites is as high as 30 GPa, one of the stiffest bionanocomposites reported. / <p>QC 20121107</p>

Xyloglucan is a hemicellulose found in the primary cell walls of many plant species. Found adjacent to the cellulose, it is believed to function as a cementing material which contributes crosslinks and rigidity to the cellulose framework. The only noncovalent linkage reported in the primary cell wall cellulose-hemicellulose-pectic polysaccharide matrix of the cultured tissues is that between xyloglucan and cellulose. Therefore, the xyloglucan:cellulose association has been of great interest to researchers. Xyloglucan can be bound to cellulose in vitro to simulate this in vivo relationship. Previously, the sorption of xyloglucan fragments onto cellulose under non-physiological conditions had been studied, but little information was available on xyloglucan polymer sorption onto cellulose under more natural conditions. This thesis examined the sorption of the xyloglucan polymer isolated from Tamarindus indica onto cellulose fibers (cotton linters) in an aqueous environment. The structure of the xyloglucan isolated from Tamarindus indica in this thesis resembled that of other tamarind xyloglucans reported in the literature. Due to the milder isolation procedure employed, the molecular weight of this polymer was much larger than those previously found. No acetyl, pyruvate, methoxyl, or carboxyl groups were found. The molecular weight and certain structural features (e.g., no fucose units) also differed from the xyloglucan found in plant primary cell walls. When sorbed onto well characterized cotton linters, this xyloglucan exhibited equilibrium sorption within 24 hours. The equilibrium adsorption isotherm was defined. Monolayer sorption occurred. A maximum specific sorption value of 3.9 milligrams of xyloglucan sorbed per gram of cotton linters was calculated using Langmuir's adsorption isotherm theory. This value was compared with other values found in the literature for similar polymer adsorption studies. The effect of molecular weight on sorption equilibrium was also examined and found to be insignificant over the molecular weight range of the polymer isolated in this thesis.

No description available.

No description available.

NR 20140805

Cellulosabaserade material är världens rikligast förekommande förnyelsebara råvara. Växters cellväggar är naturliga kompositmaterial där den kristallina cellulosan är inbäddad i en väv av hemicellulosa, strukturproteiner och lignin. Xyloglukaner är en viktig hemicellulosagrupp som omger och korslänkar den kristallina cellulosan i cellväggarna. I denna avhandling undersöks undersöks sambanden mellan struktur och funktion hos olika xyloglukan-aktiva enzymer. En modell för effektiv enzymatisk omvandling av biomassa ges av cellulosomen hos den anaeroba prokaryota organismen Clostridium thermocellum. Cellulosomen är ett proteinkomplex med hög molmassa och flera olika enzymaktiviteter, bl.a. det inverterande xyloglukan-endohydrolaset CtXGH74A. Proteinstrukturen för CtXGH74A har lösts i komplex med xyloglukanoligosackarider, som stabliliserar vissa loopar/slingor som är oordnade i apostrukturen. Ytterligare detaljerade kinetiska och produktananalyser har genomförts för att entydigt visa att CtXGH74A är ett endoxyloglukanas vars slutliga nedbrytningsprodukt är Glc4-baserade xyloglukanoligosackarider. Som jämförelse innehåller glykosidhydrolasfamilj 16 (GH16) såväl hydrolytiska endoxyloglukanaser som xyloglukantransglykosylaser (XETs) från växter. För att utreda vad som bestämmer förhållandet mellan transglykosylering och hydrolys i xyloglukanaktiva enzymer från familj GH 16 jämfördes struktur och kinetik hos ett strikt transglykosylas, PttXET16-34 från hybridasp, med ett nära besläktat hydrolytiskt enzym, NXG1 från krasse. I NXG1 identifierades en viktig förlängningsloop, som vid trunkering gav ett muterat enzym med högre transglykosyleringshastighet och minskad hydrolytisk aktivitet. Kinetikstudierna genomfördes med hjälp av nyutvecklade känsliga provmetoder med väldefinerade XGO:er och ett antal kromogena XGO-arylglykosider. En detaljerad förståelse av enzymologin inom GH16 möjliggjorde utvecklingen av en ny kemoenzymatisk metod för biomimetisk fiberytmodifiering med hjälp av PttXET16-34s translgykosyleringsaktivitet. Aminoalditolderivat av xyloglukanoligosackarider användes som nyckelintermediärer för att introducera ny kemisk funktionalitet hos xyloglukan, såsom kromoforer, reaktiva grupper, proteinligander och initiatorer för polymeriseringsreaktioner. Tekniken innebär ett nytt och mångsidigt verktyg för fiberytmodifiering. / Zellulosehaltige Materialien sind die häufigsten erneuerbaren Rohmaterialien auf der Welt. Pflanzenzellwände sind natürliche Kompositmaterialien, sie enthalten kristalline Zellulose, die in einer Matrix aus Hemizellulosen, Proteinen und Lignin eingebettet sind. Xyloglukane sind eine wichtige Gruppe der Hemizellulosen, sie ummanteln und verbinden Zellulose in der pflanzlichen Zellwand. In dieser Abhandlung werden Strukturen von drei Xyloglukanaktiven Enzymen in Beziehung zu ihrer Funktion untersucht. Ein Paradigma für effizienter Nutzung von Biomasse ist das Cellulosom des anaerob lebenden Bakteriums Clostridium thermocellum. Das Cellulosom ist ein hochmolekularer Komplex von Proteinen mit vielen verschiedenen Aktivitäten, darunter ist auch die invertierende Xyloglukan Endohydrolase CtXGH74A. Die Proteinstruktur von CtXGH74A wurde im Komplex mit Xyloglukanoligosacchariden (XGO) gelöst, welche ungeordnete Loops der apo-Struktur stabilisierten. Durch weitere detaillierte Analyse der Kinetik und Reaktionsprodukte konnte schlüssig gezeigt werden, daß CtXGH74A eine Endoglukanase ist, die Glc4-basierte XGO produziert. Im Vergleich dazu enthält die retentierende Glykosidhydrolasefamilie 16 (GH16) sowohl hydrolytische Endoxyloglukanasen als auch Transglykosidasen von Pflanzen. Um zu erklären welche Faktoren das Verhältnis zwischen Transglykosidase und Hydrolase Aktivität bei GH16 Xyloglukanaktiven Enzymen bestimmen wurde eine reine Transglykosidase PttXET16-34 von Hybridaspen mit einem nah verwandten hydrolytischen Enzym NXG1 von Kapuzinerkresse strukturell und kinetisch verglichen. Als Schlüsselstelle wurde eine Verlängerung eines Loops in NXG1 identifiziert, Verkürzung des Loops führte zu einer Mutante mit erhöhter Transglykosylierungsrate bei verminderter hydrolytischer Aktivität. Kinetische Studien wurden erleichtert durch neu entwickelte hochempfindliche Methoden für Aktivitätsmessung, die auf XGO oder chromogene Aryl-XGO als definierte Substrate zurückgreifen. Detailliertes Verständnis von GH16 Enzymologie hat den Weg für die Entwicklung für eine neuartige Methode für biomimetische Oberflächenmodifikation von Zellulosefibern geebnet, dafür wurde die transglykosylierende Aktivität von PttXET16-34 angewendet. Aminoalditol-derivate von XGO wurden als wichtigste Zwischenprodukte angewendet, um neue chemische Funktionalitäten in Xyloglukan einzuführen, darunter waren Chromophore, reaktive Gruppen, Proteinliganden und Initiatoren für Polymerisationsreaktionen. Die modifizierten Xyloglukane wurden an eine Reihe von verschiedenen Zellulosematerialien gebunden und veränderten die Oberflächeneigenschaften dramatisch. Diese Methode ist ein neues wertvolles Werkzeug für Oberflächenmodifikation von Zellulosen. / Cellulosic materials are the most abundant renewable resource in the world; plant cell walls are natural composite materials containing crystalline cellulose embedded in a matrix of hemicelluloses, structural proteins, and lignin. Xyloglucans are an important group of hemicelluloses, which coat and cross-link crystalline cellulose in the plant cell wall. In this thesis, structure-function relationships of a range of xyloglucan-active enzymes were examined. A paradigm for efficient enzymatic biomass utilization is the cellulosome of the anaerobic bacterium Clostridium thermocellum. The cellulosome is a high molecular weight complex of proteins with diverse enzyme activities, including the inverting xyloglucan endo-hydrolase CtXGH74A. The protein structure of CtXGH74A was solved in complex with xyloglucan oligosaccharides (XGOs) which stabilized disordered loops of the apo-structure. Further detailed kinetic and product analyses were used to conclusively demonstrate that CtXGH74A is an endo-xyloglucase that produces Glc4-based XGOs as limit digestion products. In comparison, the retaining glycoside hydrolase family 16 (GH16) contains hydrolytic endo-xyloglucanases as well as xyloglucan transglycosylases (XETs) from plants. To elucidate the determinants of the transglycosylase/hydrolysis ratio in GH16 xyloglucan-active enzymes, a strict transglycosylase, PttXET16-34 from hybrid aspen, was compared structurally and kinetically with the closely related hydrolytic enzyme NXG1 from nasturtium. A key loop extension was identified in NXG1, truncation of which yielded a mutant enzyme that exhibited an increased transglycosylase rate and reduced hydrolytic activity. Kinetic studies were facilitated by the development of new, sensitive assays using well-defined XGOs and a series of chromogenic XGO aryl-glycosides. A detailed understanding of GH16 xyloglucan enzymology has paved the way for the development of a novel chemo-enzymatic approach for biomimetic fiber surface modification, in which the transglycosylating activity of PttXET16-34 was employed. Aminoalditol derivates of XGOs were used as key intermediates to incorporate novel chemical functionality into xyloglucan, including chromophores, reactive groups, protein ligands, and initiators for polymerization reactions. The resulting modified xyloglucans were subsequently bound to a range of cellulose materials to radically alter surface properties. As such, the technology provides a novel, versatile toolkit for fiber surface modification. / QC 20100624

Plant primary cell walls are hydrated extracellular complexes composed largely of polysaccharides: cellulose, hemicellulose and pectin. Cell wall constituents and composition vary in cell-, environment-, and species-dependent manners. For example, within land plant hemicelluloses xyloglucan is ubiquitous while mixedlinkage (1→3),(1→4)-β-D-glucan (MLG) is found only in the Poales and Equisetum. Glycosyl hydrolase 16 (GH16) enzyme family members include numerous enzymes with pertinence to the understanding of the ‘lives’ of cell wall hemicelluloses. However, despite this, the details of the interactions between GH16 enzymes and their substrates have often not been elucidated. Likewise, the true preferences of many of these enzymes and the range of substrates which they can utilise remain to be fully explored. By providing a greater wealth of information for the correlation of enzyme structure with reaction catalysed, such an understanding would enable better predictions of the activities of novel enzymes. Crucially, this would also allow better identification of roles performed by these enzymes in planta as well as of the potential applications of these enzymes. This work sought to further our understanding of the interactions between GH16 enzymes and their substrates by the study of five activities exhibited by GH16 enzymes – xyloglucan endotransglucosylase (XET), xyloglucan endoglucanase/hydrolase (XEG/XEH), mixed-linkage glucan : xyloglucan endotransglucosylase (MXE), lichenase and cellulose : xyloglucan endotransglucosylase (CXE). All of the analysed activities act on xyloglucan and/or MLG. Of particular focus is the novel enzyme MXE from the evolutionarily isolated genus Equisetum (horsetail), which acts on both. Notable findings include: identification of MXE/CXE gene; determination of the substrate specificity of MXE; defining of the sites of attack of lichenase, XEG, XET and MXE; discovery of novel xyloglucan structures and discrepancies between the xyloglucan present in different barley organs.

Plant cell walls determine cellular shape and provide structural support for the entire plant. Polysaccharides, comprising the major components of the wall, are actively remodelled throughout development. Xyloglucan endotransglucosylase (XET)/hydrolase (XTH, EC 2.4.1.207) cleaves xyloglucan (XyG), the donor substrate, and attaches a portion to another XyG chain, the acceptor substrate. Recently, a novel transglucosylase called mixed-linkage β-glucan (MLG) : XyG endotransglucosylase (MXE) was discovered in horsetails (Equisetum spp.) that could attach a portion of MLG to XyG, resulting in a hetero-polymer product. My aims were to further investigate the nature of this activity, biochemically characterize the enzyme, and explore its physiological role. MXE activity was attributable to an enzyme unlike Equisetum XTHs. MXE had a p1 of 4.1 (XTHs were 6.6-9), a pH optimum of 6.3 (XTHs preferred 5.5), and had higher activity using smaller oligosaccharide acceptor substrates like XXXGol (XTHs were more active using XLLGol). Importantly, the MXE protein was shown to utilize both MLG and XyG as donor substrates, and therefore have both MXE and XET activity. Also, the enzyme was capable of using various glucan oligosaccharides (O) as substrates, including MLGO, XyGO, and cello-O, but not laminari-O. By using a novel ex vivo approach, the proportion of extractable MXE product to XET product was found to increase in older tissues. Transglucosylase products were localized in sclerenchyma and structural parenchyma by in situ assays, implying a strenghening function for MXE. Surprisingly, another novel activity was discovered that could covalently attach cellulose to XyG, and termed cellulose : xyloglucan endotransglucosylase (CXE). This activity was attributed to the MXE enzyme, implying that the protein is a promiscuous endotransglucosylase. The presence of CXE in other plants has not yet been tested. Besides being a novel discovery in plant cell biology, the modification of cellulose has applications in a number of industries.

The present thesis honors contemporary molecular dynamics simulation methodologies which provide powerful means to predict data, interpret observations and widen our understanding of the dynamics, structures and interactions of carbohydrate systems. With this as starting point my thesis work embarked on several cutting edge problems summarized as follows. In my first work the thermal response in crystal cellulose Iβ was studied with special emphasis on the temperature dependence of the crystal unit cell parameters and the organization of the hydrogen bonding network. The favorable comparison with available experimental data, like the phase transition temperature, the X-ray diffraction crystal structures of cellulose Iβ at room and high temperatures, and temperature dependent IR spectra supported our conclusions on the good performance of the GLYCAM06 force field for the description of cellulose crystals, and that a cautious parameterization of the non-bonded interaction terms in a force field is critical for the correct prediction of the thermal response in cellulose crystals. The adsorption properties of xyloglucans on the cellulose Iβ surface were investigated in my second paper. In our simulations, the interaction energies between xyloglucan and cellulose in water were found to be considerably lower than those in vacuo. The van der Waals interactions played a prevailing role over the electrostatic interactions in the adsorption. Though the variation in one side chain did not have much influence on the interaction energy and the binding affinity, it did affect the structural properties of the adsorbed xyloglucans. The interaction of the tetradecasaccharide XXXGXXXG in complex with the hybrid aspen xyloglucan endo-transglycosylase PttXET16-34 was studied in the third paper. The effect of the charge state of the “nucleophile helper” residue Asp87 on the PttXET16-34 active site structure was emphasized. The results indicate that the catalysis is optimal when the catalytic nucleophile is deprotonated, while the “helper” residue and general acid/base residue are both protonated. In my forth paper, the working mechanism for a redox-responsive bistable [2]rotaxane based on an α-cyclodextrin ring was investigated. The umbrella sampling technique was employed to calculate the free energy profiles for the shuttling motion of the α-cyclodextrin ring between two recognition sites on the dumbbell of the rotaxane. The calculated free energy profiles verified the binding preferences observed experimentally. The driving force for the shuttling movement of the α-cyclodextrin ring was revealed by the analysis of the free energy components. / QC 20110513