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Devido o dinamismo e complexidade estrutural observada nas paisagens antrópicas, pesquisas contínuas são necessárias para melhorar o conhecimento sobre quais os impactos delas na biodiversidade, bem como para entender quais espécies ocorrentes nestas paisagens refletem as condições ambientais lá existentes. Desse modo, tomando a avifauna como representante da biodiversidade presente nestas paisagens, esta tese objetivou: 1) caracterizar as assembleias de aves ocorrentes nos remanescentes florestais de Mata Atlântica inseridos em paisagem antrópica agrícola, bem como as assembleias que ocorrem no interior das culturas de pasto e cana-de-açúcar, 2) identificar um método analítico adequado para acessar a integridade ecológica existente nos remanescentes florestais por meio das assembleias de aves, 3) avaliar o efeito da estrutura e dinâmica destas paisagens nas assembleias de aves ocorrentes nos remanescentes florestais, 4) identificar quais características da paisagem antrópica agrícola influenciam as aves ocorrentes no interior das culturas de pasto e cana-de-açúcar. Assembleias de aves foram amostradas mensalmente durante um ano (Nov2011-Nov2012) por meio de pontos fixos e transectos em oito remanescentes florestais com diferentes tamanhos (3-115ha) e históricos de degradação, e oito sítios amostrais localizados no interior das culturas agrícolas (quatro em pasto e quatro em cana-de-açúcar). Estes foram selecionados dentro de cinco unidades amostrais de uma paisagem tipicamente (16 km2) agrícola do Estado de São Paulo (Bacia do Rio Corumbataí). O índice de serviços ecossistêmicos de Ferraz et al. (2014) foi adotado como uma medida do grau de distúrbios antrópicos presente nos remanescentes florestais do qual leva em consideração a dinâmica e estrutura deles. Já as características das paisagens nas culturas agrícolas foram coletadas em duas escalas de análise (buffers circulares de 600 e 1000m) levando em consideração métricas que pudessem refletir uma maior heterogeneidade da paisagem. No total, 191 espécies foram observadas nos remanescentes florestais, enquanto que 137 nas culturas agrícolas. As aves com hábitos florestais, não-florestais, hábitos mistos florestais-não-florestais, pequenos insetívoros de sub-bosque, aves que forrageiam no estrato médio dos remanescentes, espécies endêmicas e ameaçadas foram os melhores indicadores ecológicos nos remanescentes. Estes grupos formaram a base de dados do Índice de Integridade Biótica (IIB) um método multimétrico que obteve um melhor desempenho em refletir a integridade existente nos remanescentes quando comparado com os níveis de sensibilidade a distúrbios antrópicos de Parker III et al. (1996), riqueza geral das assembleias e índice de diversidade de Shannon. Foram registradas 132 espécies nas pastagens enquanto que apenas 72 nos canaviais, sendo que tanto a riqueza geral quanto a abundância relativa de alguns grupos de aves foram explicadas pela variação na heterogeneidade da paisagem. Assim, conclui-se que métodos analíticos classicamente utilizados em ecologia podem apresentar falhas na avaliação ecológica de remanescentes de Mata Atlântica inseridos em paisagem antrópica, ocasionando interpretações errôneas. Novos métodos analíticos devem ser explorados, sendo o IIB um possível substituto. A diferença existente entre as assembleias de aves ocorrentes nas pastagens, (maior heterogeneidade) e nos canaviais (baixa heterogeneidade) indicam as consequências negativas que homogeneização da paisagem agrícola pode ocasionar à biodiversidade ocorrente nestas paisagens. / Because human-modified landscapes (HML) are dynamic and have structural complexity, continuous research is necessary to improve knowledge about the HML impacts on the biodiversity, as well as to provide knowledge of which current species may reflect the environmental conditions existing there. Thus, considering birds as sample of the HML existing biodiversity, the following thesis aimed to: 1) describe the bird assemblages of Atlantic Forest patches located in HML and bird assemblages of the interior of cattle pastures and sugar cane crops, 2) identify a proper bird analytical approach to assess the existing ecological integrity of forest patches in HML, 3) assess the effects of the landscape features (dynamic and structure) on the bird assemblages of forest patches in HML, 4) identify which landscapes features of both crops may exert influence on the bird assemblage composition of each crop. Bird sampling was performed monthly along one year (Nov 2011 - Nov 2012) in eight forest patches with different historical and size (3 - 115 ha), and eight sites located in the interior of each crop (four in cattle pasture and four in sugar cane), using point counts and transects. Five focal landscapes (16 km2) located in a typical HML of São Paulo state (Corumbataí river basin) were used to select these sampling sites. The rank of ecosystem services provisioning of Ferraz et al. (2014) was used as a measurement of the existing gradient of human disturbance in the forest patches, which was built through information about forest dynamic and structure. The landscape features of each crop were collected through two scale of analysis (circular buffers with 600 and 1000 radius meters) taking into account metrics that may represent the landscape heterogeneity. 191 species were observed in the forest patches while 137 in the crops. The forest birds, non-forest birds, birds with forest-non-forest habits, small understory-midstory insectivorous, species with foraging habits in the midstory strata, threatened and endemic species, were the best ecological indicators of the forest patches. These bird groups were used as database in the development of the Index of Biotic Integrity (IBI), a multimetric approach, which showed a better performance to indicate the existent integrity in the forest patches in comparison with \"sensitivity to disturbance\" of Parker III et al. (1996), total species richness and Shannon´s diversity index. 132 species were observed in cattle pastures while 72 in sugar cane. Both richness and relative abundance of some bird groups were explained by the landscape heterogeneity variation. Thus, it is possible to conclude that some classical birds analytical approaches may be flawed in the ecological assessment of Atlantic Forest patches inserted in HML. New analytical approaches should be explored, and the IBI is a possible alternative. The bird\'s assemblage differences between cattle pastures (high heterogeneity) and sugar cane (low heterogeneity) are an example of the negative consequences caused by the crops homogenization on the living biodiversity of agricultural landscapes.

Conservation in the EU and all over the world aims at reducing biodiversity loss which has become a great issue in the last decades. However, despite existing efforts, Earth is assumed to face a sixth mass extinction. One major challenge for conservation is to reconcile the targets with conflicting interests, e.g. for food production in intensively used agricultural landscapes. Agriculture is an example of a coupled human-environment system that is approached in this thesis with the help of mathematical models from two directions. Firstly, the ecological subsystem is considered to find processes relevant for the effect of habitat connectivity on population abundances. Modelling theory predicts that the species-specific growth parameters (intrinsic growth rate and carrying capacity) indicate whether dispersal has a positive or negative effect on the total population size at equilibrium (r-K relationship). We use laboratory experiments in combination with a system of ordinary differential equations and deliver the first empirical evidence for a negative effect of dispersal on the population size in line with this theory. The result is of particular relevance for the design of dispersal corridors or stepping stones which are meant to increase connectivity between habitats. These measures might not be effective for biological conservation. A second population model, consisting of two coupled Ricker maps with a mate-finding Allee effect, is analyzed in order to examine the effect of bistability due to the Allee effect in combination with overcompensation in a spatial system. The interplay can cause complex population dynamics including multiple coexisting attractors, long transients and sudden population collapses. Essential extinction teaches us that not only small populations are prone to extinction but chaotic dynamics can drive a population extinct in a short period of time as well. By a comprehensive model analysis, we find that dispersal can prevent essential extinction of a population. In the context of conservation that is: habitat connectivity can promote rescue effects to save a population that exhibits an Allee effect. The two findings of the first part of this thesis have contrasting implications for conservation which shows that universal recommendations regarding habitat connectivity are impossible without knowledge of the specific system. Secondly, a model for the socio-economic subsystem is presented. Agri-environment schemes (AES) are payments that compensate farmers for forgone profits on the condition that they improve the ecological state of the agricultural system. However, classical economic models that describe the cost-effectiveness of AES often do not take the social network of farmers into account. Numerical simulations of the socio-economic model presented in this thesis suggest that social norms can hinder farmers from scheme participation. Moreover, social norms lead to multistability in farmers’ land-use decision behaviour. Informational campaigns potentially decrease the threshold towards more long-term scheme participation and might be a good tool to complement compensation payments if social norms affect land-use decisions. Finally, a coupled human-environment system is analyzed. An integrated economicecological model is studied to investigate the cost-effectiveness of AES if the species of concern exhibits an Allee effect. A numerical model analysis indicates large trade-offs between agricultural production and persistence probability. Moreover, conservation success strongly depends on the initial population size, meaning that conservation is well advised to start before the species is threatened. Spatial aggregation of habitat can promote rescue effects, suggesting land-sparing solutions for conservation. In that case,agglomeration bonuses may serve to increase the effectiveness of AES. Possible causes for population declines are diverse and can be a combination of human influences, e.g. due to habitat degradation and inherent ecosystem properties. That complicates the task of conservation. The models presented in this thesis simplify complex systems in order to extract processes relevant for biological conservation. The analysis of spatial effects and dynamical model complexity, e.g. due to Allee effects or a nonlinear utility function, allows us improve the understanding of coupled human-environment systems.

Les services écosystémiques (SE) réfèrent aux bénéfices que produisent et soutiennent la biodiversité et les écosystèmes et qui profitent à l’être humain. Dans beaucoup de cas, ils ne sont pas pris en compte dans le système économique. Cette externalisation des SE engendre des décisions sur l’utilisation du territoire et des ressources naturelles qui ignorent leur contribution à la qualité de vie des communautés. Afin notamment de sensibiliser l’opinion publique à l’importance des SE et de mieux les intégrer dans les processus décisionnels, ont été développées des démarches d’évaluation économique des SE. Dans cette thèse, nous avons cherché à comprendre à la fois comment l’utilisation passée et actuelle des sols dans la région de Montréal affecte la valeur des SE et comment ces aménités naturelles sont perçues et valorisées par la population, dans une perspective d’aménagement futur du territoire. Pour ce faire, nous avons utilisé deux approches : l’analyse spatiale recourant aux systèmes d’information géographique et l’analyse des préférences exprimées par des techniques d’enquête. Pour l’analyse spatiale, nous avons combiné des analyses cartographiques à des valeurs monétaires associées aux SE publiées dans la littérature. Nous avons alors estimé la valeur des écosystèmes d’un territoire par le transfert de bénéfices, de prix de marchés directs et de coûts évités. Cette démarche nous a permis de comprendre la relation entre l’utilisation actuelle du territoire du Grand Montréal écologique et la valeur des services fournis par les écosystèmes, que nous avons estimée à 2,2 milliards de dollars par année. Elle nous a permis aussi de mesurer les effets sur la valeur des SE du changement d’utilisation des sols entre les années 1960 et 2010. Nous avons montré que malgré différentes politiques de contrôle et d’encadrement de l’étalement urbain au cours de cette période, les pertes économiques non marchandes liées aux SE s’élèvent à 236 millions de dollars par année. Pour l’analyse des préférences exprimées, nous avons utlilisé deux méthodes, l’évaluation contingente et le choix multi-attributs, avec l’objectif de mesurer le consentement à payer de répondants pour des variations dans l’aménagement du territoire. Nous avons montré d’une part que les répondants valorisent significativement l’incidence des pratiques agro-environnementales sur la qualité de l’environnement et des paysages en consentant à payer entre 159 et 333 dollars par ménage par année pour une amélioration de la diversité du paysage agricole. D’autre part, leur volonté à payer pour l’amélioration de l’état des milieux humides du Québec est estimée entre 389 et 455 dollars par ménage par année. L’utilisation conjointe des deux méthodes nous a permis d’en comparer les résultats. Nous avons en outre démontré que le choix du format de question de valorisation de l’évaluation contingente affecte la convergence des résultats. Enfin, nous avons proposé des pistes de recherches futures portant sur l’intégration des démarches d’analyse biophysique, économique et politique dans des outils de prise de décision mieux adaptés à la dynamique des écosystèmes, de la biodiversité et des communautés humaines. / Ecosystem services (ES) refer to benefits produced and sustained by biodiversity and ecosystems that benefit humans. In many cases, they are not considered in the economic system. This externalization of SE generates decisions on land use and natural resources that ignore their contribution to the well-being of communities. In order to raise awareness of the importance of ES and better integrate them into decision-making processes, economic approaches to value ES have been developed. In this thesis, we sought to understand both how the past and current land use in the Montreal area affects the value of ES and how these natural amenities are perceived and valued by the population in a future planning and management perspective. To accomplish this, we used two approaches: spatial analysis using geographic information systems and analysis of stated preferences by survey techniques. In the spatial analysis approach, we combined cartographic analyzes to monetary values associated to ES published in the literature. We then estimated the value of ecosystems using benefit transfer, direct market prices and avoided costs methods. This approach has allowed us to understand the relationship between the current land use in the Greater Montreal and the economic value of the services provided by ecosystems, which we estimated at 2.2 billion dollars per year. It also allowed us to estimate the effects of land use changes between 1960 and 2010 on the value of ES. We showed that despite different land use planning policies implemented to manage urban sprawl during this period, non-market economic losses related to ES have reached 236 million dollars per year. In the stated preferences approach, we used two methods, contingent valuation and choice experiment, with the aim of measuring the willingness to pay of respondents for proposed changes in their environment. In a first study, we showed that respondents significantly value the impact of agri-environmental practices on the quality of the environment and landscapes and are willing to pay between 159 and 333 dollars per household per year on improving the diversity of agricultural landscape. In a second study, their willingness to pay on improving the status of wetlands in Quebec is estimated at between 389 and 455 dollars per household per year. The combined use of the two methods allowed us to compare the results. We also demonstrated that the choice of valuation question format in contingent valuation affects the convergence of the results. Finally, we propose directions for future research related to the integration of ecological, economic and political analyzes of ES that would lead to better assessments of the dynamics of ecosystems, biodiversity and human communities.

La nutrition est l'ensemble des processus par lesquels un être vivant transforme des aliments pour assurer son fonctionnement. Etudier la nutrition d’un organisme permet de comprendre les rapports entre la nourriture consommée et la santé de l’individu. L'ensemble des organes assurant l'extraction d'énergie est le système digestif, qui transforme les sucres en glucose, les corps gras en acides gras, et les protéines en acides aminés. L’objectif de cette étude est de déterminer l’influence que peut avoir la nutrition pollinique sur la santé de l’abeille domestique, Apis mellifera L.. Pour assurer cette nutrition, l’abeille est inféodée aux ressources florales. Du pollen récolté sur les plantes à fleurs, l’organisme puise les corps gras (ou lipides), les vitamines et les protéines. Or l’accès à ces ressources est variable en qualité, en quantité, et en diversité selon le temps et le milieu. Des problèmes de mortalités et affaiblissements des colonies sont observés depuis une vingtaine d’années, et l’une des causes suspectées est le manque de disponibilité et la faible valeur nutritionnelle des ressources polliniques en zones agricoles céréalières. Nous avons donc testé en conditions contrôlées les effets de la quantité, la qualité et la diversité pollinique sur la physiologie d’abeilles nourrices, sur leur immunité, ainsi que sur leur survie. La nutrition jouant un rôle essentiel dans la prévention de nombreuses maladies, les effets de l’alimentation pollinique ont été déterminés en présence ou non d’un stresseur biotique, Nosema ceranae, dont la prévalence dans les colonies est très élevée. Il s’agit d’une microsporidie invasive qui se développe dans l’intestin de son hôte, provoquant divers effets sublétaux et létaux. Etant donné que la valeur nutritionnelle d’un aliment dépend de sa composition mais aussi de sa digestibilité, une troisième partie porte sur l’influence que peut avoir le stresseur sur les capacités de digestion des protéines contenues dans le pollen par l’abeille. Nos résultats apportent des connaissances sur l’impact d’une déplétion en pollen que peuvent subir les colonies dans un paysage d’agriculture intensive. En effet, des abeilles carencées à plus ou moins 60 %, comme cela peut être observé entre deux cultures à floraison massives, subissent des perturbations au niveau individuel (perturbations du développement physiologique des abeilles nourrices, diminution de leur survie), ce qui peut les rendre moins performantes et plus sensibles aux stress présents dans l’environnement. De plus, nous avons pu démontrer que la valeur nutritionnelle des pollens, influence la tolérance des abeilles à Nosema ceranae. La qualité d’un pollen se définit par sa composition chimique totale (protéines, acides aminés, lipides, vitamines, sucres, etc…), et non pas uniquement par sa teneur en protéines ou acides aminés essentiels. Notre étude met d’ailleurs en évidence l’effet négatif d’une alimentation à base de pollen de maïs sur le développement des glandes hypopharyngiennes, l’expression du gène de la vitellogénine, et la survie des abeilles. Au regard de la présence élevée de cette culture dans les zones d’agriculture intensive et sa haute exploitation par les butineuses, nos résultats sont discutés en fonction des répercussions envisagées sur les colonies. Dans ces milieux, la diversité des ressources polliniques, par l’apport de pollens de qualité, compense la pauvreté nutritionnelle d’autres pollens. Dans nos conditions, nous pouvons observer la plus-value d’une alimentation pollinique polyflorale chez des abeilles infestées par Nosema. Les mesures agro-écologiques œuvrant pour régulariser dans le temps les apports polliniques aux colonies, et pour leur offrir une diversité alimentaire participent donc à renforcer leur capacité à lutter contre les stress présents dans l’environnement. / Nutrition is the set of processes by which a living organism transforms food for its functions. Studying nutrition allows to understanding the relationship between food intake and health of the individual. All organs for extracting energy are the digestive system, which converts sugars into glucose, fats into fatty acids, and proteins into amino acids. The objective of this study is to determine the possible influence of pollen nutrition on the honeybee health, Apis mellifera L. To ensure that nutrition, the bee is subservient to floral resources. Of pollen collected from the flowering plants, the body draws fats (or lipids), vitamins and proteins. Access to these resources is variable in quality, quantity, and diversity depending on the time and the environment. Problems of mortality and weakening of colonies are observed for some twenty years, and one of the suspected causes is the lack of availability and low nutritional value of pollen resources in agricultural areas. We therefore tested under controlled conditions the effects of quantity, quality and diversity of pollen on nurse worker physiology and on their immunity, as well as their survival. Nutrition plays a vital role in the prevention of many diseases, the effects of pollen diet were determined in the presence or absence of a biotic stressor, Nosema ceranae, whose prevalence in the colonies is very high. It is an invasive microsporidia that develops in the intestine of its host, causing various sublethal and lethal effects. Since the nutritional value of a food depends on its composition but also its digestibility, a third part focuses on the possible influence of the stressor on bee ability digestion of the proteins provided by the pollen.Our results provide knowledge on the impact of pollen depletion that may undergo the colonies in an intensive agricultural landscape. Indeed, bees starved to roughly 60%, as can be observed between two cultures massive flowering undergo disturbances at individual level (disturbances of nurse worker physiological development, reduced survival), which may make them less efficient and more susceptible to stress from the environment. In addition, we demonstrated that the nutritional value of pollen influences the Nosema ceranae‘s bee tolerance. The pollen quality is determined by the total chemical composition (proteins, amino acids, lipids, vitamins, sugars, etc ...), not only by its content of essential amino acids or proteins. Our study also demonstrated the negative effect of a diet based on maize pollen on hypopharyngeal glands development, the vitellogenin gene expression, and the bee survival. In view of the high presence of this culture in intensive agriculture areas and high exploitation by foragers, our results are discussed in terms of their impact on the proposed settlements. In these environments, the diversity of pollen resources by providing pollen of quality compensates nutritional poverty of other pollens. In our conditions, we can observe the gain of power of a polyfloral pollen in Nosema infested bees. Agro-ecological measures working to regularize, in time, the pollen contributions to the colonies, and to provide them with food diversity thus participate in building their capacity to fight against stress in the environment