Globally, amphibian species have been in decline and a wide range of factors have been purported to be driving the decline. The Gulf Coastal Plain of Florida has a high degree of endemism and rarity and the biodiversity in the region includes a diverse suite of amphibian species. Degradation of habitat has been considered by many to be a major part of amphibian declines, however amphibian declines are complex and in many cases multiple factors are occurring in concert. My dissertation research examined aspects of habitat ecology and occupancy for two rare amphibians, Florida Bog Frog (Rana okaloosae) (Chapter 1, 2, and 3) and Reticulated Flatwoods Salamander (Ambystoma bishopi) (Chapter 5), that are both restricted to the Northern Gulf Coastal Plain. Further, for R. okaloosae I examined the influence of a sympatric congener, Bronze Frog (R. clamitans clamitans), on microhabitat selection (Chapter 1) and growth of tadpoles (Chapter 4). My overall goal was to be able to elucidate factors that limit the geographic range of R. okaloosae and A. bishopi and to identify habitat characteristics that managers could maintain or create to conserve or increase populations of these species. My first chapter examined the microhabitat relationships between R. okaloosae and R. c. clamitans. Rana okaloosae is endemic to northwestern Florida and is sympatric with R. c. clamitans, a more common and widely distributed congener. Further, the two species appeared to be syntopic, have overlapping breeding seasons, and are known to hybridize. The objectives of this chapter were to assess the microhabitat selection of both species and to assess differences in microhabitat use of males of both species during the breeding season. My modeling of habitat selection and comparison of variables used by each species suggests that males of these species select different resources when calling. Therefore, these sympatric ranids select for different resources at a fine scale, however there does appear to be some overlap among some selected habitat characteristics. In Chapter 2, I assessed the habitat use of R. okaloosae at multiple spatial scales. I surveyed for R. okaloosae and evaluated habitat characteristics at used sites and sites where I had no detections to develop among- and within-stream habitat models for R. okaloosae. Rana okaloosae used habitats with high amounts of emergent vegetation at both the among-stream scale and the within-stream scale. Emergent vegetation appears frequently in models of anuran habitat selection, particularly those that occur in fire-dominated landscapes. Further understanding the habitat requirements of R. okaloosae will allow land managers to use appropriate management activities (e.g., prescribed fire) that will increase emergent vegetation and potentially restore habitat that may help increase populations of R. okaloosae. In Chapter 3, I conducted aural surveys for R. okaloosae at two different spatial scales: range-wide and stream-level scales to understand how occupancy and colonization of R. okaloosae may be influenced by scale. My results suggest that at both spatial scales occupancy of R. okaloosae was best described by the presence of mixed forest wetlands at survey sites. At the range-wide scale, colonization and detection were constant across years, however, at the stream-level scale, colonization was predicted by the number of years since last fire and detection was best predicted by the additive combination of relative humidity and temperature. Occupancy of R. okaloosae was patchy at the range-wide and at the stream-level scales and colonization was low at both scales, while derived estimates of local extinction were moderately high. While R. okaloosae still occur in 3 watersheds where they were initially observed in the 1980's, one of the three watersheds appears to be very isolated and detections there are becoming very infrequent. In Chapter 4, I experimentally evaluated the effects of R. c. clamitans tadpoles on R. okaloosae tadpoles. My results suggest that there was limited influence of R. c. clamitans on R. okaloosae. Conversely, it appeared that Rana c. clamitans was more susceptible to intraspecific competition than interspecific competition. The lack of a strong competitive effect of Rana c. clamitans on Rana okaloosae suggests that competitive interactions among tadpoles may have a limited effect at the densities I examined. In Chapter 5, our objectives were to evaluate a suite of within-pool factors (i.e., vegetation structure, water level, and an index to presence of fish) that could influence occupancy of breeding wetlands by larval flatwoods salamanders on Eglin Air Force Base in Florida, USA. Site occupancy over a 4 year period was best described by a model that incorporated high herbaceous vegetation cover and open canopy cover. Detection probability was assessed, but it varied among years and was not included in the model. Our study suggests that managing the breeding habitat of flatwoods salamander for open canopies and dense herbaceous vegetation may contribute to this species' recovery. In conclusion, Chapters 1-3 of my dissertation contribute to a growing understanding about the habitat ecology of R. okaloosae. I have evaluated habitat use of R. okaloosae at multiple spatial scales. At the finest spatial scale R. okaloosae selected for sites that had an abundance of cover probably decreasing their risk of predation (Chapter 1). Similarly, in Chapter 2 at two spatial scales, among and within-streams, R. okaloosae selected for emergent vegetation. Finally, at the broadest spatial scale, range-wide, R. okaloosae were found to be associated with mixed forest wetlands (Chapter 3). I did not find strong support for competition between R. okaloosae and R. c. clamitans tadpoles, although there was some evidence of asymmetric competition (Chapter 4). Further, adult males of each species did not select the same habitat characteristics for calling sites, so there appeared to be some resource partitioning (Chapter 1). Finally, the presence of A. bishopi larvae was found to be associated with herbaceous vegetation and moderate amounts of canopy cover (Chapter 5). Results from Chapter 2 and 5 suggest that both R. okaloosae and A. bishopi are associated with habitat conditions that are likely a result of fire penetrating wetland areas. / Ph. D.

Mitochondria from Xenopus laevis and Ambystoma mexica- num embryos between fertilization and the beginning of feeding were studied: the former with respect to metabolic behaviour, enzyme pattern and carrier activity, and the latter with respect to morphological parameters. The metabolic behaviour of mitochondria was studied by assessing the rates of oxygen uptake in presence of various substrates. The rates of oxidation of most substrates change during development. The only substrate to be readily metabolized is glutamate (in presence of malate), whose rate of oxidation presents a peak during gastrulation and declines during larval development. The high rate of oxidation of glutamate and a high aspartate aminotransferase activity indicate that the glutamate- aspartate cycle may be predominant in early embryonic mitochondria. The activity of enzymes from the matrix, the inner membrane and the outer membrane were studied. During early development activities of enzymes in the various compartments change independently of each other. Furthermore, enzymes within one compartment may vary independently. Measurements of carrier activity reveal that the carrier for dicarboxylic acids displays a high activity before gastrulation and decreases thereafter, while the tricarboxylic acid, pyruvate and glutamate/OH carriers show the opposite pattern of change, their activities being low or undetectable during early development. This implies that a mitochondrial differentiation takes place ' during development, beginning at gastrulation when the first differentiated cells appear. In order to correlate mitochondrial and cellular differentiation, morphological parameters of mitochondria from undifferentiated and differentiated cells - Ruffini cells and epidermal cells - were analyzed. Mitochondria from the differentiated cells are significantly different from those in undifferentiated cells. Thus the processes of cell differentiation are accompanied by morphological and biochemical differentiation of the mitochondria. / <p>Diss. (sammanfattning) Umeå : Umeå universitet, 1981, härtill 5 uppsatser</p> / digitalisering@umu

A robotic microscope was designed using a microcontroller to take time-lapse digital photographs of developing salamander embryos. The microcontroller operated three stepper motors to control three-axis movement accurately, and two six mega-pixel digital cameras to capture through-focus time-lapse digital pictures of six views of Ambystoma mexicanum embryos (axolotl, a salamander). The device is designed to take images every five minutes for 80 hours of early development, from fertilization to stage 20, when the neural tube closes to form the brain and spinal column. Techniques to enhance the embryo images were investigated including image fusion to get in-focus views from a stack of images. In the early embryo surface epithelial cells differentiate to form neural tissue and external skin tissue. Observing the whole embryo surface at cellular level will give a better idea of the stress and strain each cell undergoes and what physical forces are involved in cell differentiation. / May 2007

No description available.

A robotic microscope was designed using a microcontroller to take time-lapse digital photographs of developing salamander embryos. The microcontroller operated three stepper motors to control three-axis movement accurately, and two six mega-pixel digital cameras to capture through-focus time-lapse digital pictures of six views of Ambystoma mexicanum embryos (axolotl, a salamander). The device is designed to take images every five minutes for 80 hours of early development, from fertilization to stage 20, when the neural tube closes to form the brain and spinal column. Techniques to enhance the embryo images were investigated including image fusion to get in-focus views from a stack of images. In the early embryo surface epithelial cells differentiate to form neural tissue and external skin tissue. Observing the whole embryo surface at cellular level will give a better idea of the stress and strain each cell undergoes and what physical forces are involved in cell differentiation.

Canada is the second highest producer of hydroelectric energy in the world. Nearly 50 of the hydroelectric reservoirs in the country have a capacity larger than 1 billion m3. Despite the great number and extent of hydropower developments in Canada and around the world, relatively little is known about how dams and their operations influence terrestrial and semi-aquatic wildlife. Reservoirs at northern latitudes are characterized by large fluctuations in water level, which create modified shorelines called drawdown zones. To evaluate the impact of these disturbances on amphibians and reptiles, I conducted visual encounter surveys at two sites in the drawdown zone of Kinbasket Reservoir, near Valemount, B.C. From April to August of 2010 and 2011, I documented the habitat use, reproductive phenology, and body condition of two amphibian species (Anaxyrus boreas and Rana luteiventris) as well as the growth, movements, diet, and distribution of one species of garter snake (Thamnophis sirtalis). At two sites in the drawdown zone, A. boreas and R. luteiventris were present for the duration of the summer and utilized several ponds for reproduction. The presence and abundance of Rana luteiventris eggs were generally associated with ponds that had higher mean temperatures, higher mean pH, and the presence of fish. In 2010, there was sufficient time for amphibian breeding and metamorphosis to occur before the reservoir inundated the drawdown zone, but low precipitation levels in that year led to desiccation of many breeding ponds. In 2011, high rainfall and snowmelt led to early inundation of breeding ponds, and thousands of tadpoles were presumably swept into the reservoir. Gravid Thamnophis sirtalis were found at just one of two sites in the drawdown zone, but both sites were frequented by foraging individuals of this species. Anaxyrus boreas appears to be the primary prey of T. sirtalis in the drawdown zone. An improved understanding of how the amphibians and reptiles at Kinbasket Reservoir have persisted in this highly disturbed environment may be vital to their conservation — the activation of a new generating unit at Mica Dam in 2014 will alter the pattern and timing of reservoir inundation for the first time since it was constructed 40 years previously. / Graduate

A robotic microscope was designed using a microcontroller to take time-lapse digital photographs of developing salamander embryos. The microcontroller operated three stepper motors to control three-axis movement accurately, and two six mega-pixel digital cameras to capture through-focus time-lapse digital pictures of six views of Ambystoma mexicanum embryos (axolotl, a salamander). The device is designed to take images every five minutes for 80 hours of early development, from fertilization to stage 20, when the neural tube closes to form the brain and spinal column. Techniques to enhance the embryo images were investigated including image fusion to get in-focus views from a stack of images. In the early embryo surface epithelial cells differentiate to form neural tissue and external skin tissue. Observing the whole embryo surface at cellular level will give a better idea of the stress and strain each cell undergoes and what physical forces are involved in cell differentiation.

I investigated the value of under-road tunnels as a conservation strategy to protect a long-toed salamander population, in south-west Alberta, whose overwintering sites and breeding habitat (Linnet Lake) are separated by a road. I conducted a mark-recapture study from 2008-2009, capturing salamanders using roadside fences and pitfall traps. Four tunnels were monitored in 2009 using traps and cameras. A 2008 estimate indicated that the population declined by 60% since 1994, however, road mortality was dramatically reduced following installation of fences and tunnels. Camera and trap data documented 130 salamanders navigating tunnels in 2009. I found little evidence of juvenile recruitment from Linnet Lake, likely because of predation by lake chub. Experiments showed that lake chub consumed salamander larvae, and fish presence altered larval behaviour. Continued monitoring is needed to determine if reduced road mortality translates into population gains, and whether fish predation threatens the persistence of the long-toed salamander population. / Ecology

Thesis (Ph. D.)--Ohio State University, 2009. / Title from first page of PDF file. Includes vita. Includes bibliographical references (p. 82-92).

Understanding the demography of species over recent history (e.g., < 100 years) is critical in studies of ecology and evolution, but records of population history are rarely available. Large single nucleotide polymorphism datasets generated with restriction-site associated DNA sequencing (RADseq), in combination with demographic inference methods, are improving our ability to gain insights into the population history of both model and non-model species. However, to assess the performance of genetic methods it is important to compare their estimates of population history to known demography, in both simulation and empirical settings. Here, I used a simulation approach to examine the potential for RADseq datasets to accurately estimate effective population size (Ne) in Wright-Fisher populations over the course of stable and declining population trends, and distinguish stable from steadily declining populations over a contemporary time scale (20 generations). Overall, my results reveal that demographic inference using genome-wide data can be successfully applied to estimate Ne, and the detection of population-size declines. Next, I assess these methods in an empirical study from a wetland with 37 years of amphibian mark-recapture data to study the utility of genetically-based demographic inference on salamander species with documented population declines (Ambystoma talpoideum) and expansions (A. opacum). For both species, demographic model inference supported population size changes that corroborated mark-recapture data. To further validate these findings, I used individual-based population models of the pond-breeding salamander, Ambystoma opacum, with life-history parameters estimated from a long-term dataset, over a 50 year projection. My results demonstrate that genetically estimated Ne is positively correlated with census size in isolated and subdivided A. opacum populations. Finally, I investigated metapopulation patterns of genomic diversity in A. opacum and A. talpoideum and how migration may impact Ne estimation. I found strong patterns of subpopulation structuring, signatures of migration between subpopulations, and differences in Ne at the subpopulation level in both species. Overall, my findings suggest the ability of genomic data to reconstruct recent demographic changes, which can have important applications to conservation biology, and ultimately can help us elucidate the effects of environmental disturbances in the demography of endangered or declining species.