Assimilable organic carbon (AOC) is a suspected contributor to growth of microbes, including pathogens, in plumbing systems. Two phases of research were completed to improve knowledge of AOC and other forms of organic carbon in premise plumbing. In the first phase, the AOC Standard Method 9217B was compared to a new luminescence-based AOC in terms of time, cost, convenience, and sources of error. The luminescence method was generally more accurate, as it better captured the peak growth of the test organisms. It was also less expensive and less time-consuming. A few approaches to improving the accuracy of the method and detect possible errors were also presented. In the second phase of research, the possibility of AOC generation in premise plumbing was reviewed and then tested in experiments. It has been hypothesized that removal of AOC entering distribution systems might be a viable control strategy for opportunistic premise plumbing pathogens (OPPPs), but if AOC was generated in premise plumbing systems this approach would be undermined. Possible sources of AOC creation in premise plumbing, which is herein termed "distribution system derived biodegradable organic carbon (DSD-BDOC)," include: leaching of organic matter from cross linked polyethylene (PEX) pipes, autotrophic oxidation of H2 generated from metal corrosion (e.g. sacrificial magnesium anode rods and iron pipes), rendering of humic substances more biodegradable by sorption to oxides such as Fe(OH)3, and accumulation of AOC on filters and sediments. The potential for various plumbing and pipe materials to generate AOC was compared in controlled simulated water heater experiments. Under the worst-case condition, generation up to 645 µg C/L was observed. IT was not possible to directly confirm the biodegradability of the generated organic carbon, and there were generally no correlations between suspected generation of organic carbon and either heterotrophic plate counts (HPC) or of bacterial 16S rRNA genes. DSD-BDOC was also explored in a simulated distribution system with two disinfectant types (chlorine and chloramine) and three pipe materials (PVC, cement, and iron). TOC increased with water age, probably due to leaching of organics from PVC and possibly the aforementioned DSD-BDOC due to autotrophic reactions of nitrifiers and iron-related bacteria. As before, relationships between the higher levels of organic carbon and either HPC or 16S were not observed. / Master of Science

Nitrogen is requisite for yeast growth and metabolism during wine fermentation, and contributes to wine flavor development. Understanding how yeast assimilable nitrogen (YAN) impacts wine chemistry and sensory properties helps inform nitrogen management decisions in both the vineyard and winery. This study used Virginia-grown Chardonel, obtained from a multi-year viticulture study evaluating the impact of nitrogen fertilizer on grapevines. The objective of this work is to determine if vineyard treatments resulted in sufficient juice YAN profile differences to impart chemical and/or sensory differences in resulting wines. Grapes were combined from each field replication of six vineyard nitrogen treatments and pressed to generate six juice lots. Each juice was divided in two for triplicate fermentation using one of two Saccharomyces cerevisiae x bayanus yeast strains: EC1118 or QA23 to investigate the interactive effects of YAN and yeast strain. Juice and wine samples were frozen until chemical and UPLC-PDA amino acid analysis. Fermentation replications of each wine were combined, bottled, and stored at 4ºC for four months until evaluation via sensory sorting task with untrained panelists (n=63). Juice YAN concentrations ranged from 157-201mg N/L, a small variation in terms of commercial winemaking. Chemical differences between wines produced with the same juice but different yeast strains were larger in wines that had lower juice YAN concentrations. DISTATIS analysis of sorting results showed differences but no pattern in sensory perceptions of wines based on nitrogen profile or yeast strain. This range of nitrogen profiles shows limited impact of YAN profile on final wine quality. / Master of Science in Life Sciences / Nitrogen is an essential nutrient in grape growing and winemaking. Grapevines use nitrogen as a nutrient to survive and produce grapes for making wine. In winemaking, yeast turn the sugar and nitrogen in grape juice into alcohol via fermentation, using nitrogen to grow and produce other compounds that contribute to the final flavor of the wine. Understanding how nitrogen qualities and quantities in grape juice impact final wine quality is important so vineyard managers can apply nitrogen fertilizer to meet their needs. This thesis evaluates how different nitrogen quantities and qualities in the initial juice and during white wine fermentation impact the chemical and sensory properties of a final wine product. A Chardonel vineyard is being maintained for a multi-year study where the vineyard is divided for grapes in different areas of the plot to receive one of six different nitrogen fertilizer treatments. Grapes were harvested from each treatment and pressed into juice. Each lot of juice was then split in two for fermentation by one of two yeast strains for a total of 12 wines. Wines were bottled and stored for four months until sensory evaluation. Samples of juice and wine were collected and frozen before chemical analysis for nitrogen and other standard wine industry parameters. For sensory analysis, consumers were asked to taste each wine then sort them into groups based on how similar the wines were perceived to be. Chemical differences were found between wines, but they did not translate into sensory differences. Vineyard managers and winemakers can be aware that in Virginia-grown Chardonel, with modest differences in nitrogen from the vineyard treatments, differences in juice and wine chemical parameters did not impact the final wine product.

Vineyards in the Eastern United States are often prone to excessive vegetative growth. In order to suppress excessive vine vigor, many viticulturists have employed cover cropping strategies. Cover crops provide a myriad of agronomic benefits, however they are known to compete with the vine for water and nutrients. Due to the widespread use of cover crops in Eastern vineyards, many vineyards experience nitrogen (N) deficiencies in both the vegetative vine tissue and yeast assimilable nitrogen (YAN) in the juice. Soil applications of calcium nitrate and foliar applications of urea were assessed as a means of vineyard N amelioration at cover cropped sites comprised of Petit Manseng and Sauvignon blanc (Vitis vinifera L.). Perennial White and Crimson clover cover crops and foliar urea applications were also used in a Vidal blanc (Vitis spp.) vineyard. Treatments were imposed in the Sauvignon blanc vineyard for five years. The Petit Manseng and Vidal blanc vineyards were subjected to treatments for two years. Soil-applied N at bloom was most effective at increasing leaf petiole N at véraison, season-long chlorophyll content index (CCI), vine capacity and fruit yield. Fruit yield was increased due to more berries per cluster and greater berry weights. Increased rates of soil-applied N decreased the fruit weight:pruning weight ratio. Foliar-applied N after fruit set was most effective at increasing berry YAN. While most of the measured amino acids in fruit increased in concentration with the application of either soil or foliar N, foliar applications were more effective at increasing fruit amino acids. Clover cover crops offered little to no benefit as a N source in the two-year period of evaluation. None of the N management schemes negatively impacted canopy density, fruit zone light interception, or botrytis bunch rot incidence. The combination of both a soil-applied and foliar-applied N fertilizer may be the most effective means to increase both vine capacity and YAN in vineyards where vineyard floor cover crops are compromising vine N status. / Master of Science

Under-trellis cover crops have become more prevalent in East Coast grape growing regions through either intentional planting or adoption of native vegetation, to minimize the potential for erosion and to help regulate grapevine size and vigor. These companion crops, however, have sometimes resulted in increased competition for soil nitrogen, leading to decreased vine nitrogen status and berry yeast assimilable nitrogen (YAN). The aim of this study was to determine the effects of different nitrogen fertilization methods applied at varying doses and different times, on vine and berry nitrogen parameters of cover cropped grapevines. The research described herein involved Sauvignon blanc, Merlot, and Petit Manseng grapevines (Vitis vinifera L.) subjected to different sets of nitrogen treatments, and was primarily conducted over two years. There were very few differences in pruning weights, canopy architecture, components of yield, and primary fruit chemistry amongst nitrogen treatments. Sauvignon blanc petiole nitrogen concentration, season-long chlorophyll content index (CCI) values, and berry YAN were most affected by the highest rate of soil nitrogen treatment (60 kg N/ha total split between two calcium nitrate applications at bloom and six weeks post bloom) and foliar fertilization (40 kg N/ha split over seven to nine urea applications); however, the foliar fertilization was most effective at increasing the concentration of certain individual amino acids. Petit Manseng berry YAN at harvest was increased in response to post-véraison foliar applications (10 kg N/ha split between two urea applications), corresponding to an increased concentration of nine amino acids. Merlot berry YAN, petiole nitrogen concentration, and season-long CCI values were most affected by a high rate of soil nitrogen treatment (60 kg N/ha total split between two calcium nitrate applications at bloom and six weeks post bloom) and establishing clover as the under-trellis cover crop. This study identified nitrogen treatments that improved berry nitrogen concentration and content in cover cropped sites. / Master of Science

La déficience des sols en éléments minéraux, particulièrement le phosphore (P) est une limitation majeure pour la croissance et le développement des légumineuses fixatrices d’azote. L’application des fertilisants phosphatés est une pratique traditionnelles pour satisfaire les besoins des plantes en P. Ainsi, pour tester l’efficacité d'utilisation du P pour la fixation symbiotique de l’azote (FSN) sous déficience en P, plusieurs lignées recombinantes (RILs) de haricot contrastantes dans leurs tolérance au déficit en P ont été utilisées. L’objectif principal de cette étude est d’évaluer l’aptitude de ces RILs pour l’amélioration de la fertilité phosphatée des sols déficients en P et sa relation avec la croissance et la nodulation de la légumineuse. Pour atteindre ces objectifs, des expériences ont été réalisées sous serre et en champs d'agriculteurs. Sous conditions contrôlées (serre) et non contrôlées (champs), les résultats ont montré une diminution du pH des sols associée à une augmentation du P assimilable. Une telle augmentation de la disponibilité du P a eu un effet positif sur la nodulation et la croissance de certaines des RILs testées. Aussi, l’amélioration de l’aptitude de ces RILs à fixer l’azote atmosphérique et l’élévation de la libération des protons H+ par les racines nodulées ont été quantifiés en milieu contrôlé. Ainsi la diminution du pH du sol a permis de réduire l’indisponibilité du P dans la solution du sol en le transformant en une forme directement biodisponible pour ces plantes. En outre, les résultats ont montré des différences significatives entre les différentes RILs en termes de la biomasse aérienne et nodulaire selon les sites d'observation. Nous concluons que, outre leur aptitude de fixation d’azote, l’utilisation efficace du phosphore pour sauver des engrais minéraux et de réduire les risques de pollution et pourrait améliorer la disponibilité des sols P. / The deficiency of soil minerals, particularly phosphorus (P) is a major limitation for growth and development of nitrogen-fixing by legumes. The application of phosphate fertilizers is a traditional practice to meet the needs of plant P. Thus, to test the effectiveness of use of P for symbiotic nitrogen fixation (NSF) under P deficiency, several recombinant inbred lines (RILs) of beans in their contrasting tolerance to P deficiency have been used. The main objective of this study is to assess the ability of these RILs to improve the fertility of soils deficient in phosphorus (P) and its relationship with growth and nodulation of the legume. To achieve these objectives, some experiments were conducted in greenhouses and fields. Under controlled conditions (greenhouse) and uncontrolled conditions (field), the results showed decreasing in soil pH associated with Proton release H+ and P acquisition. The increasing in available P had a positive effect on nodulation and growth of some RILs tested. Also, improving the ability of these RILs to fix atmospheric nitrogen and release H+ by nodulated roots were quantified in a controlled environment. Thus the decreasing in soil pH has reduced the un-availability of P in soil solution by transforming it into a bio-available form to the plants. In addition, the results showed significant differences between RILs in biomass and nodulation as observation in sites. We conclude that, in addition to their ability to fix nitrogen, effective use of phosphorus to save mineral fertilizer and reduce the pollution risks and could improve the availability of soil P.

This thesis is focused on technological processes during drinking water treatment. The emphasis is put on monitoring indicators of organic substances present in water and indicators of the biological stability of treated water. The experimental part is focused on the comparison of separation efficiency of drinking water treatment technological processes by monitoring of chemical oxygen demand, absorbance measured at 254 nm, bioseston, culturable microorganisms and assimilable organic carbon.

La masse de la baie est le résultat de l’effet intégré de plusieurs facteurs. La recherche a été dessinée afin d’étudier l’effet simultané des facteurs majeurs influençant la masse et la composition de la baie, de les hiérarchiser selon leur degré d’impact à des échelles différentes, de séparer leur effet direct et indirect sur la composition du raisin et de comparer le profil de vins élaborés à partir de petites et grosses baies. L’étude a été conduite sur deux sites expérimentaux, localisés dans les régions de Saint-Emilion (France) et Alcamo (Italie), pendant les années 2014 et 2015. Sur le premier site, les vignes sont plantées sur deux types de sols, tandis que sur le deuxième, deux traitements hydriques étaient appliqués. A l’échelle intra-parcellaire, l’état hydrique de la vigne représente le facteur le plus important, tandis que l’effet du nombre de pépins par baie n’est pas significatif. Des résultats opposés sont obtenus lorsque les relations sont étudiées à l’échelle de la grappe et de la plante. A large échelle, les facteurs impactent directement et indirectement la composition du raisin et les petites baies produisent des moûts et des vins plus concentrés. A l’inverse, à l’échelle de la grappe et de la plante, la masse de la baie n’influence pas la composition du raisin. Seule la concentration en anthocyanes est significativement liée à la masse à toutes les échelles. Cette relation est particulièrement évidente sous conditions hydriques limitantes. Un déficit hydrique augmente le ratio pellicule/pulpe, indépendamment de la masse de la baie. Petites et grosses baies d’une parcelle ayant une condition hydrique homogène, tendent à avoir un profil similaire. / Final berry mass is the result of the integrated effect of several factors. They also influence berry composition. The present work was designed to study the simultaneous effect of major factors influencing berry mass and composition, to hierarchize their impact at different scales, to distinguish their direct and indirect effect on berry composition and to compare the profile of wines made from large and small berries. The study was carried out simultaneously on two vineyards located in the Saint Emil ion (France) and Alcamo (Sicily) areas, during 2014 and 2015. On the first site, vines were planted on two soil types, while on the second site two different irrigation treatments were applied. Depending on the scale, some factors homogeneously impacted the berry mass and composition. At the intra-parcel scale, vine water status represented the most impacting factor, while berry seed number did not have significant effect. Opposite results were obtained when the investigation was carried out at the intra-bunch and intra-plant scales. At large scale, factors impacted directly and indirectly berry compounds and grape juices and wines produced from smaller berries were more concentrated. Neither at intra-bunch, nor at intra-plant scales, berry size effect on juice composition was significant. Only anthocyanin concentration was related to berry size at all scales. This fact was particularly obvious in berries produced under limited water conditions. Water deficit increased the skin to flesh ratio, independently of berry size. This means that small and large berries, produced from a single parcel with homogenous water uptake conditions, tend to have similar enological profiles.

Biological filtration (Biofiltration) processes have been used first in Europe and then in North America for decades, however currently there is not a good overall parameter to guide biofiltration design and operation except adopting parameters from traditional particle- removal filtration process. On the basis of the biofilm model developed by Rittmann and McCarty (1980a) and the pseudo-analytical solution for the model, Zhang and Huck (1996a) obtained an analytical solution for PF (plug flow) reactors (which can be used for biofilters approximately) after demonstrating that axial dispersion could be reasonably ignored and developed a new parameter, X*, which incorporates considerations of physical contact time, filter media particle size, kinetics, etc. A small-scale application on peers’ engineering/research data by Huck (1999) demonstrated it was a better indicator than other parameters for biofiltration performance. By collecting, screening and investigating literature on AOC, BDOC and odorous compounds removal by biofiltration process, this thesis applied the X* concept to the collected investigations to assess process performances among different target parameters, different filters and different investigations. To the author’s knowledge, this is the first such attempted comprehensive comparison of literature studies, interpreted in terms of a common parameter (X*). The wide ranges of particle sizes, EBCTs, temperatures and high diversity of pre-treatment and operation conditions for the collected cases were considered to be able to well represent biofiltration practices for studied removal targets. No significant relationship between EBCTs and removal percentages were found, indicating that EBCT alone is not able to guide biofiltration design and operation. Based on kinetics parameter comparison, BDOC removal-X* relationship was established. A new parameter, θα, was developed in this thesis to refer to estimated X* values only considering EBCT and particle size. θα parameter values were estimated by comparison of ratios of θα products ((θα)’) based on the properly chosen calculation bases. Distribution of the θα values for temperature-favored (i.e. temperature ≥15°C) AOC and BDOC removal biofiltration processes matched the established removal-X* relationship reasonably. Given the exploratory nature of this research and the complexity of attempting quantitations, fits were assessed based on visual comparison. With the assistance of supporting information and by adopting available temperature activity coefficients, temperature-adjustment coefficients for θα values were determined for the different temperature ranges. Temperature-adjusted AOC and BDOC removal-θα relationships were developed and temperature-adjusted θα parameter values for AOC and BDOC removal were also estimated. Comparisons were conducted, showing fair matches based on visual examinations, for most of the temperature ranges. No relationships were found between ozone dosages and AOC/BDOC removal percentages and the statistical analysis indicated there was significant difference of removal efficiencies between ozonated and non-ozonated influents for biofilters, suggesting ozonation may not only increase the amount of BOM for following biofilter and increase the biodegradability of bulk water; it may also increase the biodegradability of AOC and BDOC themselves. It may not be realistic to obtain the estimated θα values for MIB and geosmin removal by biofiltration. However, plotting θα product vs. removal percentage for the collected MIB and geosmin removal cases shows more positive co-relationships than EBCT-removal percentage relationships visually. A utilization factor η was proposed to guide biofilter design and operation and to assess “over-design” and “under-operated”. Biofilter over-design or under-operated is common for the collected cases. In general, examining X* (or θα, a parameter incorporating the physical components of X*) provided useful information in terms of evaluation and prediction of biodegradable organic compounds removal by biofiltration, which confirms that X* is a better parameter for biofiltration design and operation than other parameters, such as EBCT.

Biological filtration (Biofiltration) processes have been used first in Europe and then in North America for decades, however currently there is not a good overall parameter to guide biofiltration design and operation except adopting parameters from traditional particle- removal filtration process. On the basis of the biofilm model developed by Rittmann and McCarty (1980a) and the pseudo-analytical solution for the model, Zhang and Huck (1996a) obtained an analytical solution for PF (plug flow) reactors (which can be used for biofilters approximately) after demonstrating that axial dispersion could be reasonably ignored and developed a new parameter, X*, which incorporates considerations of physical contact time, filter media particle size, kinetics, etc. A small-scale application on peers’ engineering/research data by Huck (1999) demonstrated it was a better indicator than other parameters for biofiltration performance. By collecting, screening and investigating literature on AOC, BDOC and odorous compounds removal by biofiltration process, this thesis applied the X* concept to the collected investigations to assess process performances among different target parameters, different filters and different investigations. To the author’s knowledge, this is the first such attempted comprehensive comparison of literature studies, interpreted in terms of a common parameter (X*). The wide ranges of particle sizes, EBCTs, temperatures and high diversity of pre-treatment and operation conditions for the collected cases were considered to be able to well represent biofiltration practices for studied removal targets. No significant relationship between EBCTs and removal percentages were found, indicating that EBCT alone is not able to guide biofiltration design and operation. Based on kinetics parameter comparison, BDOC removal-X* relationship was established. A new parameter, θα, was developed in this thesis to refer to estimated X* values only considering EBCT and particle size. θα parameter values were estimated by comparison of ratios of θα products ((θα)’) based on the properly chosen calculation bases. Distribution of the θα values for temperature-favored (i.e. temperature ≥15°C) AOC and BDOC removal biofiltration processes matched the established removal-X* relationship reasonably. Given the exploratory nature of this research and the complexity of attempting quantitations, fits were assessed based on visual comparison. With the assistance of supporting information and by adopting available temperature activity coefficients, temperature-adjustment coefficients for θα values were determined for the different temperature ranges. Temperature-adjusted AOC and BDOC removal-θα relationships were developed and temperature-adjusted θα parameter values for AOC and BDOC removal were also estimated. Comparisons were conducted, showing fair matches based on visual examinations, for most of the temperature ranges. No relationships were found between ozone dosages and AOC/BDOC removal percentages and the statistical analysis indicated there was significant difference of removal efficiencies between ozonated and non-ozonated influents for biofilters, suggesting ozonation may not only increase the amount of BOM for following biofilter and increase the biodegradability of bulk water; it may also increase the biodegradability of AOC and BDOC themselves. It may not be realistic to obtain the estimated θα values for MIB and geosmin removal by biofiltration. However, plotting θα product vs. removal percentage for the collected MIB and geosmin removal cases shows more positive co-relationships than EBCT-removal percentage relationships visually. A utilization factor η was proposed to guide biofilter design and operation and to assess “over-design” and “under-operated”. Biofilter over-design or under-operated is common for the collected cases. In general, examining X* (or θα, a parameter incorporating the physical components of X*) provided useful information in terms of evaluation and prediction of biodegradable organic compounds removal by biofiltration, which confirms that X* is a better parameter for biofiltration design and operation than other parameters, such as EBCT.

Vineyards in the Mid-Atlantic often have large, vigorous vines that can be costly to manage and produce inadequate fruit for wine production. Dense canopies increase the incidence of fungal disease, require greater allocation of resources to manage, and inhibit fruit development. The primary objective of these studies was to determine effective vine-size modification treatments that would optimize fruit quality, while reducing labor and chemical control. Research factors included root manipulation, under-trellis ground cover, and rootstock. Treatment levels were root bag (RBG) or no root manipulation (NRM); under-trellis cover crop (CC) or herbicide strip (HERB); and one of three rootstocks: 101-14, Riparia Gloire, or 420-A. Effects of these treatments were measured in two experiments: Experiment I compared combinations of all three treatments, while Experiment II explored the individual effects of root restriction using root bags of varying volumes. Root restriction consistently demonstrated the ability to reduce vegetative growth and vine water status. In the first experiment fruit-zone photosynthetic photon flux density (PPFD) was increased by 234% in RBG vines. Timed canopy management tasks indicated that RBG canopies required about half the labor time of NRM canopies. Anthocyanin concentration and total phenolic content were increased by 20% and 19% respectively in RBG fruit. CC increased fruit-zone PPFD by 62%, and increased soluble solids and color compounds. The 420-A rootstock reduced potassium uptake, resulting in lower must potassium concentration. Results demonstrated that these treatments significantly reduce vegetative growth in a humid climate, decrease management labor, and produce higher quality fruit. / Master of Science