Myers first identified the world’s 25 biodiversity hotspots and pioneered innovative ideas about the usefulness of biodiversity models for establishing long-term resource conservation strategies at global scales. Since Myers, most of the subsequent studies using hotspot science for biodiversity modeling have used large spatial scales like countries, provinces or states, and other biogeoraphic regions. The California Floristic Province continues to be one of the recognized global biodiversity hotspots. Our study site, San Luis Obispo County is within this hotspot and we created a map of plant biodiversity hotspots at the county scale using GIS technology. We wanted to determine the effectiveness and applicability of biodiversity hotspot mapping at this scale with anticipation that the map will serve as a new tool for establishing long-term resource conservation strategies in the County. Our plant biodiversity hotspot map is based on distribution data collected from herbarium specimens of San Luis Obispo County’s rare flora. These data were extracted from the Hoover Herbarium at Cal Poly and manually digitized into GIS. We built a model with GIS to identify, locate, and quantify the resultant hotspots from the data. The overall approach was successful at identifying and quantifying the attributes and geographic extents of plant biodiversity hotspots at the county scale. Our results are highly applicable for establishing local and regional plant conservation priorities at lower resolutions, which is frequently where land acquisition and reserve establishment occurs. We conclude that biodiversity hotspot modeling with GIS is an effective tool that can be applied to many other finer-scale biological inventories for conservation purposes.

In protists a biodiversity hotspot could be defined as region with exceptionally high ratio of local to global species diversity. In 2012 Aquitaine (France) was revealed to represent a hotspot of Synurales (lineage within silica-scaled chrysophytes). To investigate how the diversity is distributed and where the species are hidden, samples from 42 lakes were collected during spring peak of Chrysophyte occurrence (from March 27th to March 31st ). Samples were taken in two microbiotopes - phytoplankton and metaphyton. Metaphyton was represented by different substrates (aquatic plants). I identified seventy-six species from genera Mallomonas and Synura, which confirmed Aquitaine to be a hotspot. In this thesis, I investigated ecological drivers of chrysophytes diversity and community structure. The chrysophyte diversity was driven mostly by mutual impact of pH and conductivity, north-south gradient of lakes location and sampled microbiotopes. Number of identified species increased with increasing pH and conductivity, with increasing size of waterbody and with location of the lake more towards the South. More taxa were revealed from metaphyton (77) than from plankton (61), substrates played an important role. Lakes in Aquitaine are rich in different species of aquatic plant, which immersed create...

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Premise of research. The duration and intensity of flowering overlap among plants are the first determiners of the potential for pollinator-mediated plant-plant interactions. Yet, our ability to describe community-wide patterns of coflowering, and thus understand its impact on the structure of plant-pollinator communities, is limited. Methodology. We present a conceptual framework for how network theory can reveal structural properties that are ecologically relevant in diverse coflowering communities. Coflowering modules, in particular, may suggest that groups of species coflower more strongly (clustering) with each other than with other species (over-dispersion) in the community. Such a finding would indicate that competitive and facilitative interactions do not act alone but instead act simultaneously to mediate the assembly of coflowering communities. We illustrate our conceptual framework in four diverse coflowering communities in the serpentine seeps in northern California. Pivotal results. Our coflowering networks vary in size and degree but not in overall connectance, suggesting that both intrinsic community features (species richness) and ecological constraints (length of flowering season) play a role in mediating coflowering community structure (distribution of frequency and intensity of flowering overlap among plant species). We show, for the first time, that groups of species tend to coflower more strongly with each other than with other species in a community, supporting the idea that competition and facilitation are not mutually exclusive processes mediating coflowering community assembly. Our results show that the degree of modularity is not sensitive to the number of coflowering species within each community, suggesting that ecological factors may be more important in driving this pattern. Conclusions. Coflowering networks have the potential to advance our understanding of the causes and consequences of flowering overlap in diverse plant communities by revealing a more in-depth and novel characterization of coflowering community structure. Such characterization will allow for a better understanding of the importance of coflowering patterns in mediating the structure of plant-pollinator interactions.

Objectifs généraux: les systèmes fluviaux tropicaux et tempérés d'eau douce sont connus pour soutenir différentes communautés biotiques. Dans cette étude, menée dans une région d'Asie tropicale et dans une région d'Europe tempérée, j'ai étudié la composition et la diversité de la communauté des macro-invertébrés benthiques ainsi que leurs variations spatiales et temporelles. J'ai également examiné les influences des variables physico-chimiques de la qualité de l'eau sur les variations et la diversité de la composition de la communauté et j'ai modélisé l'occurrence d'espèces sélectionnées. Localisation géographique: Asie tropicale: le bassin aval du Mékong (LMB), couvrant une superficie de 609 000 km2; Europe tempérée: Europe occidentale, fleuves flamands (Belgique), couvrant une superficie de 13 787 km2. Matériel et méthodes: Pour le LMB, les données recueillies de 2004 à 2008 ont été utilisées et les valeurs médianes de cette période ont été analysées. Pour les rivières flamandes, les données collectées de 1991 à 2010 ont été utilisées. Les données ont été divisées en 4 périodes: D1: 1991-1995, D2: 1996-2000, D3: 2001-2005 et D4: 2006-2010. Les médianes de chaque période ont été utilisées pour des analyses spatiales détaillées. Des analyses multivariées ont été appliquées pour relier la composition et la diversité de la communauté aux variables physico-chimiques. Cinq techniques de modélisation, à savoir la régression logistique (LR), les Random Forest (RF), le Support Vector Machine (SVM), les réseaux de neurones artificiels (ANN) et les arbres de classification (CT) ont été utilisées pour modéliser l'occurrence desespèces sélectionnées. Principaux résultats: Variations de la composition des communautés, diversité et relation avec les variables environnementales Dans le cours aval du Mékong LMB, 299 taxons de macro-invertébrés distribués dans 196 genres et 90 familles ont été identifiées; dont 131 insectes, 98 mollusques, 38 crustacés et 32 annélides. / Overall aims: Freshwater tropical and temperate river systems are known to support different biotic communities. In this study, I investigated benthic macroinvertebrate community composition and diversity and its spatial and temporal variation both in tropical Asian and temperate European regions. I also examined the influences of physical-chemical water quality variables on community composition, variations and diversity, and modelled the occurrence of selected species. Locations: Tropical Asia: the Lower Mekong Basin (LMB), covering an area of 609,000 km2; Temperate Europe: Western Europe, Flemish rivers (Belgium), covering an area of 13,787 km2. Materials and Methods: For the LMB, data collected from 2004 to 2008 were used, and median values of this period were analysed. For Flemish rivers, data collected from 1991 to 2010 were used. The data were divided into 4 periods: D1: 1991-1995, D2: 1996-2000, D3: 2001-2005 and D4: 2006-2010. The medians of each period were used for detailed spatial analyses. Multivariate analyses were applied to relate community composition and diversity to physical-chemical variables. Five modelling techniques namely Logistic Regression (LR), Random Forest (RF), Support Vector Machine (SVM), Artificial Neural Network (ANN) and Classification Tree (CT) were used to model the occurrence of selected species. Main results: Community composition variations, diversity and relationship with environmental variables From the LMB, 299 macroinvertebrate taxa belonging to 196 genera and 90 families were identified: 131 insects, 98 molluscs, 38 crustaceans, and 32 annelids.

L'archipel des Mascareignes (Réunion, Maurice et Rodrigues) est, avec les Seychelles, les Comores et Madagascar, l'un des 34 « hotspots » de biodiversité reconnus à l'échelle mondiale. Dans un contexte de disparition des habitats par les activités humaines, l'objectif de la thèse a été de comprendre la dynamique évolutive à différentes échelles spatiales et temporelles d'une famille d'espèces indigènes des écosystèmes forestiers, les Sapotacées. Ces espèces arborées présentent une gamme diversifiée de niveaux d’endémisme, d'abondance, de modes de régénération et de caractéristiques biologiques. La famille des Sapotacées comprend 3 genres et 14 espèces indigènes des Mascareignes (Mimusops, Labourdonnaisia et Sideroxylon) dont certaines espèces, rares et protégées, sont endémiques d'une des trois îles de l'archipel des Mascareignes. À l'échelle de la famille, l'analyse des séquences chloroplastiques de la famille des Sapotacées a confirmé la forte différenciation entre genres avec deux clades. Le premier clade est constitué par toutes les espèces de Sideroxylon structurées en trois sous-clades distincts dont deux correspondent aux sections Eusideroxylon et Calvaria, montrant une diversité haplotypique importante. Le deuxième clade est constitué par deux sous-clades formés respectivement par les espèces de Labourdonnaisia et celles de Mimusops. Alors qu'il n'est pas possible de résoudre les relations de parenté des Mimusops, Labourdonnaisia présentent deux lignées évolutives soulevant une incongruence entre les données taxonomiques et phylogénétiques. À l'échelle des deux lignées du genre Sideroxylon (Sections Eusideroxylon et Calvaria), l'analyse des marqueurs microsatellites chloroplastiques a montré une forte diversité haplotypique à la fois chez des espèces communes comme S. borbonicum ou rares comme S. majus associé à différenciation marquée entre l'île Maurice et la Réunion au sein des deux lignées. De plus, il a été mis en évidence des patrons de structure de la diversité génétique différents selon l'île et l'espèce considérée : une structure spécifique dans le genre Sideroxylon de la section Calvaria à Maurice et une structure géographique chez S. cinereum de Maurice et les espèces réunionnaises. À l'échelle de la lignée des Sideroxylon de la section Calvaria, les marqueurs microsatellites nucléaires ont permis d'identifier clairement toutes les espèces avec une forte différenciation entre S. majus de la Réunion et l'ensemble des espèces mauriciennes. À Maurice, la différenciation est plus marquée entre S. grandiflorum et les deux autres espèces S. sessiliflorum et S. boutonianum avec des évènements d'hybridation entre ces deux dernières espèces possibles. À l'échelle de S. majus de la Réunion, une très forte diversité génétique structurée en trois groupes génétiques a été mise en évidence à l'aide de marqueurs microsatellites nucléaires. La comparaison de la diversité génétique des cohortes des adultes et des juvéniles ne présente pas d’érosion génétique. Des méthodes de conservation sont proposées en fonction de ces caractéristiques génétiques pour S. majus, espèce rare en danger. L'ensemble des résultats obtenus chez les Sapotacées endémiques des Mascareignes montre que la diversité génétique est structurée à différentes échelles spatiales, selon les espèces et les lignées évolutives considérées, soulignant la nécessité d'études complémentaires afin de déterminer les processus qui sont à l'origine des patrons détectés. / Madagascar is among the top five priorities "hotspots" for global biodiversity conservation. In Madagascar, melliferous flora is diverse and abundant; the endemic honey bee Apis melliferaunicolor inhabits all areas regardless of the climatic conditions and topography. As other islands, Madagascar is fragile and susceptible to invasions of alien species. In 2010, Varroa destructor has been reported parasitizing A. m. unicolor. The ectoparasite is not only a serious threat to beekeeping in Madagascar but it may also alter ecosystems balance.The objectives of this thesis were i) to study the genetic diversity and population structure of both A. m. unicolor and V. destructor in Madagascar, ii) to estimate the impact of V. destructor on honey bee colonies, and iii) to investigate the hygienic behaviour of honey beeOur results confirm that all honey bees collected in Madagascar belonged to the African evolutionary lineage and more than 99% were identified as A. m. unicolor. Despite its lownuclear genetic diversity, two genetic clusters have been detected, corresponding to geographic regions.In Madagascar, only one genetic strain of V. destructor was detected, the Korean haplotype (K1-1) which is the most widespread lineage in the world and the one present in Africa. Genetic studies showed a higher proportion of homozygous genotype (69.5%) and also a high number of MLG (Multi- Locus Genotypes) in the High Lands compared to the East coast. The presence of particular MLG on the High Land reinforces the assumption of its introduction into the capital. The spread of V. destructor in Madagascar is relatively slow in comparison with those observed in African countries. Its presence remains confined to the High Land and the East coast. The impact of the parasite on A. m. unicolor was severe; with about 60% of colony losses in a year reported in 2012. Nevertheless, this is less than observed in Europe, where many more colonies died at the early stage of infestation.Based on the percentage of cleaned cells observed 6 hour after pin killing the brood, the efficiency of A. m. unicolor colonies to detect and uncap cells was comparable to those of Africanised hygienic honey bees and was much higher than those of European honey bees. In Madagascar, the detection of highly hygienic colonies of A. m. unicolor is a great opportunity to develop a programme of selection of tolerant honey bee strains.

Em diversos estudos ao redor do globo, a estrutura e heterogeneidade da vegetação têm se mostrado um fator determinante na diversidade de espécies de aves e também de outros grupos de animais. O Cerrado é o segundo mais extenso e mais ameaçado bioma de ocorrência no Brasil. Este bioma também é caracterizado por um evidente gradiente ambiental de estrutura e heterogeneidade de vegetação. Na presente tese analisamos a influência da estrutura e heterogeneidade da vegetação sobre a diversidade em comunidades de aves do Cerrado. Nossa expectativa era corroborar a “Hipótese de Heterogeneidade de Habitats”, que propõe que quanto maior a estrutura e heterogeneidade da vegetação, maior será a diversidade de espécies. No primeiro capítulo, realizamos uma compilação sistemática de estudos publicados sobre a diversidade de aves em áreas ocupadas por algumas fisionomias típicas de Cerrado lato sensu, com o intuito de analisar o conhecimento obtido até então acerca da relação entre diversidade de aves e a estrutura da vegetação no Cerrado. Foram selecionadas 72 amostras de 22 estudos, sendo que estas amostras variaram quanto ao tipo fisionomia amostrada e o método amostral empregado, além de também estarem disponíveis em diferentes artigos e serem realizadas em diferentes regiões geográficas. Para análises destes dados, utilizamos a análise de modelos lineares generalizados de efeitos mistos (modelo com distribuição de erros poisson), que permite analisar os efeitos de variáveis fixas e aleatórias sobre a variável explicativa (riqueza de espécies). As variáveis fixas foram o tipo de vegetação amostrada (vegetação campestre, savânica e florestal) e o método amostral empregado (ponto fixo, transecto e redes de neblina). Já as variáveis de efeito aleatório utilizadas foram o estudo onde os dados foram publicados, o autor de cada estudo e a localidade geográfica. O efeito destas variáveis aleatórias poderiam afetar somente os interceptos das relações entre as variáveis fixas e a variável explicativa ou poderiam alterar a relação entre as variáveis fixas e explicativa. Construímos diversos modelos a partir da combinação de variáveis de efeito fixo e aleatório e a seleção do modelo mais parcimonioso foi feito por meio do critério AICc (critério de informação de Akaike corrigido para pequenas amostras). O modelo que apresentou menor valor de AICc (mais parcimonioso) foi aquele que incluiu os efeitos de ambas variáveis de efeito fixo (fisionomia e método amostral) e também um efeito da interação entre estas duas variáveis. Neste modelo também foram incluídos os efeitos das variáveis aleatórias estudo e localidade geográfica sobre os interceptos das relações entre as variáveis de efeito fixo e a variável explicativa. Estes resultados mostraram que a riqueza de espécies de aves em nosso estudo variou não só em função da fisionomia e do método amostral empregado, mas dependendo do método amostral utilizado a relação entre riqueza e fisionomia também foi alterada. Portanto, esta interação não permitiu que fosse estimada a relação entre fisionomia e riqueza sem considerar o efeito dos métodos. Já os efeitos das variáveis aleatórias mostraram que a variação estimada nos interceptos entre estudos foi duas vezes maior do que a variação estimada entre localidades geográficas. O efeito da interação entre as variáveis fisionomia e método amostral apontou para a existência de heterogeneidade de detecção entre locais com diferentes fisionomias, além também de um efeito das fisionomias na efetividade dos diferentes métodos amostrais. A influência dos métodos amostrais no número de espécies observadas em cada fisonomia pode ser esperada devido às diferenças intrínsecas dos métodos, já que ponto fixo e transecto são baseados em contatos visuais e auditivos com as espécies, enquanto que o método de rede de neblina consiste na captura passiva das espécies que voam na altura das redes. Assim, redes de neblina podem ser mais efetivas em habitats menos estruturados (por ex. campos limpos e sujos), onde a rede alcança quase todo os estratos de vegetação. No entanto, o método de transecto pode ser mais efetivo que o método de ponto fixo em áreas de florestas, pois nestes hábitats as espécies tendem a ter territórios menores e o deslocamento do observador proporciona ao observador cobrir um maior número de terrítórios. Por outro lado, o ponto fixo pode ser mais vantajoso por não produzir ruído e afugentar as espécies, o que pode ser uma desvantagem do método de transecto. Outros fatores, como a experiência e número de observadores, número de pontos amostrais, número de redes utilizadas e comprimento de transectos, podem explicar a grande variação estimada entre os estudos. Uma das maneiras de se contornar estes efeitos metodológicos é utilizar métodos desenvolvidos especialmente para lidar com diferentes probabilidades de detecção entre espécies, entre sítios e até métodos amostrais, o que poderia render dados mais confiáveis para o estudo da ecologia das espécies e para a elaboração de planos de manejo e/ou conservação. No segundo capítulo, a relação entre diversidade de aves e estrutura da vegetação foi analisada a partir de dados coletados em campo e utilizando um protocolo de amostragem específico para se estimar e considerar os efeitos da vegetação sobre a detecção das espécies. As amostragens foram realizadas em um dos maiores e mais preservados remanescentes de Cerrado (Parque Nacional Grande Sertão Veredas-PARNA GSV) e consistiram do registro das espécies de aves em 32 áreas dispostas em um gradiente de vegetação de Cerrado, que variaram desde campos limpos e sujos, campos cerrado a cerrados sensu stricto. O cálculo da riqueza de espécies de aves em cada sítio foi realizado através de modelos de ocupação-detecção, adaptados para estimar a riqueza de espécies em comunidades. A vegetação, por sua vez, foi medida a partir de estimativas de presença da vegetação entre 0 e 4 m de altura (16 intervalos de 22,5 cm cada um) e duas variáveis de estrutura foram obtidas a partir de uma análise de componentes principais, que foi aplicada para resumir a variação da presença de vegetação nos 16 intervalos de altura. Estas variáveis de vegetação foram relacionadas tanto com a ocupação quanto com a detecção das espécies, já que a estrutura da vegetação poderia influenciar não só a ocorrência mas também a detecção das espécies. O dia da amostragem e também a temperatura no momento da amostragem também foram incluídas como covariáveis que poderiam afetar a detecção. Após a estimativa da riqueza de espécies pelo modelo de ocupação-detecção para comunidades, esta riqueza estimada foi relacionada por uma função quadrática com a estrutura da vegetação usando um modelo bayesiano de metanálise, que permitiu incluir a incerteza nas estimativas de riqueza na análise. A título de comparação, também foi ajustado um modelo quadrático GLM (distribuição de erros normal) aos dados de riqueza observada. Os resultados mostraram que a riqueza estimada a partir dos dados das 38 espécies mais detectadas durante as amostragens teve uma fraca relação com as duas covariáveis de estrutura de vegetação, sendo que houve uma maior riqueza de espécies em sítios com vegetação intermediária em altura e uma maior riqueza de espécies de aves em sítios onde houve maior presença de vegetação abaixo de 2 m de altura. No entanto, as relações entre riqueza estimada e estas covariáveis foi menos intensa mas qualitativamente similar às relações entre a riqueza observada e as covariáveis de vegetação. A menor intensidade nas relações da riqueza estimada foi evidenciada principalmente em ambos os extremos do gradiente de estrutura vertical da vegetação e também nas áreas com menor presença de vegetação abaixo de 2 m. Estes resultados mostraram que o efeito da detecção pode alterar o efeito da relação entre riqueza de espécies e estrutura de vegetação. Além disso, ao menos para as 38 espécies mais comumente encontradas na área de estudo, os resultados apontam para a importância de todo o gradiente de estrutura da vegetação para a manutenção da riqueza de espécies de aves no Cerrado. Futuros estudos que visem aprimorar o uso destes modelos de ocupação e detecção para comunidades são fundamentais para permitir o uso dos dados de todas as espécies da comunidade. Além disto, outros estudos que se proponham a analisar a dinâmica e composição das comunidades de aves nestes gradientes de estrutura de vegetação são fundamentais para um maior conhecimento sobre a ecologia e conservação das aves no Cerrado / In several studies around the globe, the structure and diversity of vegetation have been shown to be a determining factor in the diversity of species of birds and also other groups of animals. The Cerrado is the second most extensive and most threatened biome occurrence in Brazil. This biome is also characterized by an obvious environmental gradient of vegetation structure and heterogeneity. In this thesis we analysed the influence of the structure and diversity of the vegetation on the diversity in the Cerrado bird communities. Our expectation was to support the “Habitat Heterogeneity Hypothesis” which suggests that the higher the structure and diversity of vegetation, the greater the diversity of species. In the first chapter, we conducted a systematic compilation of published studies on the diversity of birds in areas occupied by some typical physiognomy of Cerrado textit lato sensu, in order to analyze the knowledge obtained so far about the relationship between diversity of birds and the structure of the vegetation in the Cerrado. We selected 72 samples from 22 studies, and these samples varied as the sampled vegetation physiognomy, the sampling method used, and they also are available in different articles and be carried out in different geographical regions. We performed the analysis of generalized linear mixed effects models (model poisson distribution errors), which allows us to analyse the effects of fixed and random variables on the explanatory variable (species richness). Fixed variables were the type of sampled vegetation (grassland, savanna and forest) and the sample method employed (fixed point, transect and mist nets). The random variables used were the study where the data were published, the author of each study and geographic location. These random variables could only affect the intercepts of the relationship between fixed and variable explanatory variable or could alter the relationship between fixed and explanatory variables. We built several models from the combination of fixed and random effects variables and selection the most parsimonious model was made by the AIC criterion (Akaike information criterion corrected for small samples). The model that showed lower value of AIC (more parsimonious) was the one that included the effects of both fixed effect variables (physiognomy and sampling method) and also an effect of the interaction between these two variables. In this model were also included the effects of random variables study and geographic location of the intercepts of the relationship between the fixed effect variables and the explanatory variable. These results showed that the bird species richness in our study varied not only in terms of physiognomy and sample method, but depending on the sampling method used the relationship between richness and physiognomy has also changed. Therefore, this interaction does not allowed us to estimate the relationship between physiognomy and richness without considering the effect of the methods. Since the effects of random variables showed that the variation in the estimated intercept between studies was twice larger than the estimated variation between geographic locations. The effect of interaction between the vegetation physiognomy and sampling method variables pointed to the existence of heterogeneity detection between locations with different physiognomies, in addition also of an effect of the physiognomies in the effectiveness of different sampling methods. The influence of the sampling method in the number of species observed in each physiognomy may be expected due to intrinsic differences in the methods, since fixed point counts and transect are based on visual and aural contacts with the species, while the mist net method consists in passive capture of species flying at the time of the networks. Thus, mist nets may be more effective in less structured environments (eg. Clean and dirty fields) where the net reaches virtually all vegetation layers. However, transect method can be more effective than the fixed point method in areas of forests since in these habitats species tend to have smaller territory areas, and the observer movement provides the observer cover greater areas. On the other hand, the point counts can be more advantageous not to produce noise and chase species, which may be a disadvantage of transect method. Other factors, such as experience and number of observers, the number of sampling points, the number of nets used and length of transects, may explain the wide variation between studies estimated. One of the ways to overcome these methodological effects is to use methods developed especially to deal with different probabilities of detection of species, between sites and sampling methods, which could yield more reliable data for the ecological study of the species and the development of management plans and/or conservation. In the second chapter, the relationship between diversity of birds and vegetation structure was analysed from data collected in the field and using a specific sampling protocol to estimate and consider the effects of vegetation on the detection of species. The samples were taken in one of the largest and well preserved remnants of Cerrado (Grande Sertão Veredas National Park-PARNA GSV) and consisted of the record of bird speciesin 32 areas arranged in a Cerrado vegetation gradient, ranging from grasslands, open and dense savannas. The calculation of the bird species richness at each site was conducted using occupancy-detection models adapted to estimate the number of species in communities. The vegetation, in turn, was measured from estimates of the presence of vegetation in height intervals between 0 and 4 m (16 intervals of 22.5 cm each) and two structure variables were obtained from a principal component analysis applied to summarize the variation of the vegetation presence in height intervals. These vegetation variables were related to both the occupation and detection of species, since the vegetation structure could influence not only the occurrence but also the detection of species. The day of sampling and also the temperature at the time of sampling were also included as covariates that may a_ect the detection. After the estimation of species richness by model occupancy detection for communities, this estimated richness was related by a quadratic function with the vegetation structure using a Bayesian meta-analysis model, which allowed us include uncertainty in richness estimates. By way of comparison, we also fit a quadratic model GLM (normal distribution errors) to the observed richness data. The results showed that the richness estimated from the data of the 38 most detected species during sampling had a weak relationship with both covariates vegetation structure, and there was a greater number of species at sites with intermediate vegetation height and greater bird species richness in places where there was a greater presence of vegetation below 2 m in height. However, relations between estimated richness and these covariates was less intense but qualitatively similar to the relationship between observed richness and vegetation covariates. The lowest intensity in the estimated richness relationship was observed mainly at both ends of the vertical gradient of vegetation and also in areas with less presence of vegetation below 2 m. These results showed that the effect of detection can change the effect of the relationship between species richness and vegetation structure. Moreover, at least for the 38 species most commonly found in the study area, the results point to the importance of the entire vegetation structure gradient to maintain the bird species richness in Cerrado. Future studies aiming to improve the use of these models of occupation and detection for communities are essential to allow the use of data of all species in the community. In addition, other studies that propose to analyse the dynamics and composition of bird communities in these vegetation structure gradients are fundamental for a better understanding of the ecology and conservation of Cerrado birds

Content removed from thesis due to copyright restrictions: Seabrook-Davison, M. N. H., Weihong, J. J. & Brunton, D. H. (2010). "Survey of New Zealand Department of Conservation staff involved in the management and recovery of threatened species." Biological Conservation, 143: 212-219. doi: 10.1016/j.biocon.2009.10.005. Seabrook-Davison, M. N. H., Ji, W. & Brunton, D. H. (in press). "New Zealand lacks comprehensive threatened species legislation -- comparison with legislation in Australia and the USA." Pacific Conservation Biology, 16. / It is only recently that New Zealand wildlife managers have become aware of both the taxonomic range of New Zealand’ indigenous biodiversity and the number of species threatened with extinction. The entire New Zealand archipelago has been described as a biodiversity hotspot; a term with both negative and positive connotations as although its biodiversity is unique and diverse, it has lost three quarters of its primary vegetation and much of its remaining endemic biota is in decline. This thesis evaluated aspects of New Zealand’s approach to the management of biodiversity with an emphasis on methods used in the recovery of threatened species. Possible solutions are presented that New Zealand could investigate to improve the delivery of species recovery. A survey was conducted amongst Department of Conservation (DOC) staff to investigate management tools available to them. Results suggest that inadequate resources, staff shortages and an overwhelming workload have resulted in a failure to achieve comprehensive recovery of threatened species. A review of New Zealand wildlife conservation legislation and a comparison with the USA Endangered Species Act 1973 and Australian Environment Protection and Biodiversity Conservation Act 1999, suggests that a lack of dedicated threatened species legislation is hindering the effective recovery of New Zealand’s threatened species. The thesis concludes that New Zealand has the advantage of a large conservation estate but lacks an integrated national management approach to the conservation of its biodiversity. Considerable improvement of the management and recovery of threatened species can be achieved with the enacting of dedicated threatened species legislation. Keywords: Threatened species, biodiversity, biodiversity hotspot, conservation, management, recovery plans, recovery groups, Department of Conservation, legislation, threat classification system, listing, ecological function, ecosystem services, staff survey, New Zealand

Content removed from thesis due to copyright restrictions: Seabrook-Davison, M. N. H., Weihong, J. J. & Brunton, D. H. (2010). "Survey of New Zealand Department of Conservation staff involved in the management and recovery of threatened species." Biological Conservation, 143: 212-219. doi: 10.1016/j.biocon.2009.10.005. Seabrook-Davison, M. N. H., Ji, W. & Brunton, D. H. (in press). "New Zealand lacks comprehensive threatened species legislation -- comparison with legislation in Australia and the USA." Pacific Conservation Biology, 16. / It is only recently that New Zealand wildlife managers have become aware of both the taxonomic range of New Zealand’ indigenous biodiversity and the number of species threatened with extinction. The entire New Zealand archipelago has been described as a biodiversity hotspot; a term with both negative and positive connotations as although its biodiversity is unique and diverse, it has lost three quarters of its primary vegetation and much of its remaining endemic biota is in decline. This thesis evaluated aspects of New Zealand’s approach to the management of biodiversity with an emphasis on methods used in the recovery of threatened species. Possible solutions are presented that New Zealand could investigate to improve the delivery of species recovery. A survey was conducted amongst Department of Conservation (DOC) staff to investigate management tools available to them. Results suggest that inadequate resources, staff shortages and an overwhelming workload have resulted in a failure to achieve comprehensive recovery of threatened species. A review of New Zealand wildlife conservation legislation and a comparison with the USA Endangered Species Act 1973 and Australian Environment Protection and Biodiversity Conservation Act 1999, suggests that a lack of dedicated threatened species legislation is hindering the effective recovery of New Zealand’s threatened species. The thesis concludes that New Zealand has the advantage of a large conservation estate but lacks an integrated national management approach to the conservation of its biodiversity. Considerable improvement of the management and recovery of threatened species can be achieved with the enacting of dedicated threatened species legislation. Keywords: Threatened species, biodiversity, biodiversity hotspot, conservation, management, recovery plans, recovery groups, Department of Conservation, legislation, threat classification system, listing, ecological function, ecosystem services, staff survey, New Zealand

Content removed from thesis due to copyright restrictions: Seabrook-Davison, M. N. H., Weihong, J. J. & Brunton, D. H. (2010). "Survey of New Zealand Department of Conservation staff involved in the management and recovery of threatened species." Biological Conservation, 143: 212-219. doi: 10.1016/j.biocon.2009.10.005. Seabrook-Davison, M. N. H., Ji, W. & Brunton, D. H. (in press). "New Zealand lacks comprehensive threatened species legislation -- comparison with legislation in Australia and the USA." Pacific Conservation Biology, 16. / It is only recently that New Zealand wildlife managers have become aware of both the taxonomic range of New Zealand’ indigenous biodiversity and the number of species threatened with extinction. The entire New Zealand archipelago has been described as a biodiversity hotspot; a term with both negative and positive connotations as although its biodiversity is unique and diverse, it has lost three quarters of its primary vegetation and much of its remaining endemic biota is in decline. This thesis evaluated aspects of New Zealand’s approach to the management of biodiversity with an emphasis on methods used in the recovery of threatened species. Possible solutions are presented that New Zealand could investigate to improve the delivery of species recovery. A survey was conducted amongst Department of Conservation (DOC) staff to investigate management tools available to them. Results suggest that inadequate resources, staff shortages and an overwhelming workload have resulted in a failure to achieve comprehensive recovery of threatened species. A review of New Zealand wildlife conservation legislation and a comparison with the USA Endangered Species Act 1973 and Australian Environment Protection and Biodiversity Conservation Act 1999, suggests that a lack of dedicated threatened species legislation is hindering the effective recovery of New Zealand’s threatened species. The thesis concludes that New Zealand has the advantage of a large conservation estate but lacks an integrated national management approach to the conservation of its biodiversity. Considerable improvement of the management and recovery of threatened species can be achieved with the enacting of dedicated threatened species legislation. Keywords: Threatened species, biodiversity, biodiversity hotspot, conservation, management, recovery plans, recovery groups, Department of Conservation, legislation, threat classification system, listing, ecological function, ecosystem services, staff survey, New Zealand