No description available.

No description available.

The American chestnut tree (Castanea dentata) is a deciduous tree that largely exists in the eastern United States along the Appalachian Mountain range. Approximately 100 years ago, a fungal pathogen (Cryphonectria parasitica) decimated chestnut populations, resulting in the loss of billions of trees. Disease-resistant American chestnut populations have been developed, but the introgression of wild adaptive diversity into these breeding populations will be necessary to develop locally adapted and disease resistant chestnut trees for reintroduction. In this dissertation, I presented our findings which addressed previous gaps in knowledge regarding the population genomics of wild and backcross American chestnut populations. I 1) estimated the genomic diversity, population structure, and demographic history of remnant wild American chestnut populations; 2) revealed the genomic basis of local climate adaptation in American chestnut, developed a novel method to make tree sampling estimates for germplasm conservation, and defined unique seed zones for American chestnut based on climate and genotype, and 3) determined the amount of wild adaptive diversity captured by the backcross breeding program and made recommendations for their replanting region. These results will inform the development of a breeding plan for the introgression of adaptive diversity into backcross and transgenic chestnut populations. / Doctor of Philosophy / The American chestnut tree (Castanea dentata) is a deciduous tree that largely exists in the eastern United States along the Appalachian Mountain range. Approximately 100 years, a fungal disease (Cryphonectria parasitica) decimated chestnut populations, resulting in the loss of billions of trees. The American Chestnut Foundation developed disease-resistant American chestnut backcross trees by breeding American chestnut trees with Chinese chestnut trees (Castanea mollissima). These trees will need additional breeding with wild American chestnut trees so that their offspring will have both the disease-resistant traits and the adaptations to the local environment where they will be replanted. This is important, because trees that are both disease-resistant and locally adapted will be most likely to survive and thrive in their replanting location. However, a comprehensive evaluation of the genomic basis for local adaptation in American chestnut populations is lacking. In this dissertation, I presented our findings which addressed previous gaps in knowledge regarding the population genomics of wild and backcross American chestnut populations. I 1) estimated the genomic diversity, number of unique populations, and population size changes over time in wild American chestnut; 2) revealed the genes related to local adaptation in American chestnut, developed a novel method to make tree sampling estimates for conserving wild American chestnut diversity, and defined unique seed zones (areas within the species range that have unique adaptations to environment) for American chestnut based on climate (ie, precipitation and temperature values) and genotype (DNA), and 3) determined the amount of wild genomic diversity related to local adaption captured by the backcross breeding program and made recommendations for their replanting region. These results will inform the development of a breeding plan of wild American chestnut with backcross and transgenic chestnut populations to create locally adapted and disease-resistant chestnut populations for reintroduction.

Virginia ranks third in fresh market staked tomato (Lycopersicon esculentum Mill.) production with approximately 1,659 hectares on the Eastern Shore. Estimated annual gross value is $30,800,000. Copper and chlorothalonil have long been considered essential to control bacterial and fungal diseases in fresh market tomatoes. High rates of these fungicides on tomatoes grown under plastic mulch have led to concerns about their potential adverse effect on water quality in estuaries adjacent to fields. The development of new fungicides, such as azoxystrobin and acibenzolar-S-methyl, which have more favorable environmental fate characteristics and are used at much lower rates, may provide viable alternatives to copper and chlorothalonil. Using a disease forecasting system, such as Tomcast, may reduce the number of applications of fungicides. The research objectives of this study were to reduce the amount of copper and chlorothalonil used in fresh market tomato production and to evaluate the effectiveness of the Tomcast disease forecasting system for controlling fungal leaf diseases on the Eastern Shore. Field studies compared copper to acibenzolar-S- methyl for bacterial diseases caused by Xanthomonas campestris pv. vesicatoria and Pseudomonas syringae pv. tomato. Research plots were established in a randomized complete block design with four replications in grower fields and at the Eastern Shore Agricultural Research & Extension Center. Acibenzolar proved to be as effective as the standard copper bactericides in controlling bacterial spot. Acibenzolar provided better control than the standard copper bactericides when bacterial speck was the target disease. Azoxystrobin application alternated with maneb was evaluated as a replacement for chlorothalonil. Azoxystrobin and Tomcast were studied as tools to reduce chlorothalonil use for control of Alternaria solani. Tomcast can reduce the number of applications by 40-70 % per year and provide adequate control of early blight. Azoxystrobin provides better control of early blight than chlorothalonil. Use of these new, more environmentally compatible, plant-protection products , along with the Tomcast disease forecasting system, can significantly reduce or eliminate the need to use copper and chlorothalonil for tomato disease management and therefore eliminate them as potential pollutants of the Chesapeake Bay and Atlantic Ocean estuaries. / Master of Science

Southern Blight (SB), caused by the fungus Athelia rolfsii, has increasingly impacted Mississippi soybean production with estimated economic losses in recent years rising from $181,616 in 2016 to $9,508,412 in 2021. Currently, there are no recommended fungicides and no known commercially available cultivar resistance. Eleven cultivars were evaluated for their response to the presence of Athelia rolfsii in the 2021 field trial. An in vitro fungicide assay was conducted to evaluate the efficacy of five fungicides to determine the respective EC50. These fungicides were then evaluated in combination with three cultivars, one mild, one moderate, and one severe in the 2022 field trial and in the growth chamber trial. A rapid and quantitative method was developed to evaluate the response of these commercially available soybean cultivars in combination with fungicides to SB. Determining effective management options has the potential to decrease disease losses for Mississippi Soybean growers.

Fusarium head blight (FHB) is a horribly destructive fungal diseases of barley. FHB is caused by a species complex of Fusaria, of which Fusarium graminearum Schwabe is the main causal species of FHB epidemics in Canada. Field surveys show that two or more Fusarium species often co-exist within the same field or grain sample and F. poae is reported as another important species in barley in Ontario and Quebec. The aim of this study was to observe the pathogenicity of F. graminearum, F. poae and a co-inoculation of both species causing FHB in barley. Two susceptible barley cultivars were spray-inoculated at 10 to 14 days after heading. Phenotypic disease severity was rated on a scale of 0-9 at 4, 7, 14, 21, and 28 days after inoculation. There was a significant difference in FHB severity between F. graminearum and F. poae, where infection with F. graminearum produced more severe disease ratings. F. poae generated lower disease ratings and was not statistically different from the control. When heads were co-inoculated with both Fusarium species, the resulting FHB severity was unchanged 54relative to heads inoculated with F. graminearum only. The ratio of F. graminearum to F. poae genomic DNA was also no different than when heads were inoculated with F. graminearum alone, as quantified with ddPCR using markers specific to each species. Metabolomic analysis of sample extracts corroborated our other findings where F. graminearum appeared to outcompete F. poae in barley also at the mycotoxin level. Barley cultivar did not have a significant effect on visual FHB disease ratings and fungal DNA detection, however there were some chemical differences between cultivars in response to challenge by both F. graminearum and F. poae.

No description available.

No description available.

The global food supply is being stressed by climate change, a growing population, and harmful diseases. One risk to vital cereal crops such as wheat and barley is Fusarium head blight (FHB), caused by the fungal plant pathogen Fusarium graminearum. Ascospores of the fungus are released from perithecia on the residues of corn and small grains and can be transported long distances (>500 m) through the atmosphere. The overall objective of this work was to assess the influence of meteorological conditions and perithecial maturity on ascospore release. The research focuses on F. graminearum because of its damaging impact to staple crops and the global ubiquity of FHB. The first specific objective was to apply state-of-the-science techniques to identify causal meteorological variables of ascospore release. We analyzed field measurements of airborne ascospores against meteorological conditions at Virginia Tech's Kentland Farm, Blacksburg, Virginia, USA and used convergent cross mapping and multivariate state space reconstruction to identify significant causal agents within this complicated natural and dynamic system. We identified relative humidity, solar radiation, wind speed, and air temperature as predictors of ascospore release. Our second research objective was to understand the impact of varying meteorological conditions on ascospore release under controlled environmental conditions. We assessed ascospore release in a chamber with controlled temperature (15°C and 25°C) and relative humidity (60%, 75%, and 95%). Ascospores released from ascospore-producing structures (perithecia) were captured on microscope slides placed inside of 3D-printed ascospore discharge devices. Results showed the sensitivity of ascospore release to relative humidity and temperature, with cool temperature and high relative humidity resulting in greater quantities of ascospores released. Our third research objective was to determine the relationship between the maturity, the number of ascospores, and the hardness of perithecia. A mechanical compression testing instrument was used to investigate the hardness of perithecia at various stages of maturity, producing a mean perithecium compression constant quantifying the uniaxial compression force required to rupture a perithecium. Results indicated that old perithecia contain the greatest amount of ascospores and exhibit increased resiliency, requiring greater forces to rupture, compared to young perithecia. This research has illustrated the complexities of F. graminearum ascospore release by describing the impact of several meteorological conditions and perithecial maturity on the timing and quantity of released ascospores. Collectively, our results may inform wheat growers on the nature and timing of ascospore release, which could help inform FHB management decisions in the future. / Ph. D.

Peanuts are an important legume crop cultivated in Mississippi with an annual production of 71 million kg per hectare. Southern blight (SB), caused by Athelia rolfsii, is a devastating disease resulting in significant losses to peanut production. Cultural practices may not adequately control diseases; therefore, the application of fungicides is important. Recently, the rapid growth of weed species has emphasized herbicide usage and studied weed interaction with SB. In this study, Athelia rolfsii isolates were collected from different counties to identify their biological characteristics and determine the in vitro efficacy in both 2022 and 2023. In the field trial, seven fungicides were applied in-furrow in both 2022 and 2023. Additionally, eight herbicides were applied at pre-emergence, post-emergence, and mid-post emergence along with the application of fungicides, Revytek, and Omega 500. The introduction of appropriate management practices has led to significant SB losses and an increased pod yield.