As características físico-químicas da parede celular constituem um grande gargalo na obtenção dos açúcares fermentáveis a partir dos polissacarídeos de parede celular presentes na biomassa, fato conhecido como recalcitrância da biomassa vegetal. A utilização da biomassa na produção de biocombustíveis requer um melhor entendimento sobre os mecanismos que permeiam os processos de deposição de parede celular e metabolismo de lignina. Nesse contexto, a maior parte do conhecimento foi gerado em espécies eudicotiledôneas, havendo uma significativa lacuna para gramíneas, apesar do seu grande potencial para acúmulo de biomassa. Portanto, há uma necessidade de se estabelecer ferramentas-modelos que permitam elucidar características exclusivas da parede celular secundária de gramíneas C4, cujo conhecimento não pode ser extrapolado a partir de eudicotiledôneas. O presente trabalho propôs estabelecer um sistema de células em suspensão como ferramenta-modelo em estudos sobre parede celular secundária em gramíneas C4. Para tal, três espécies foram inclusas: Sorghum bicolor, Setaria viridis e cana-de-açúcar. Devido às características recalcitrantes do sorgo, apenas as suspensões celulares de S. viridis e cana-de-açúcar foram estabelecidas. Subsequentemente, estas culturas foram utilizadas na tentativa de se desenvolver duas aplicações para o estudo de parede secundária: i) culturas xilogênicas, em que as células em suspensão são induzidas a se transdiferenciar em elementos traqueais; e ii) sistema de protoplastos para ensaios de transativação para testar o potencial papel de fatores de transcrição na regulação transcricional da deposição de parede celular. Somente as culturas de cana-de-açúcar responderam aos tratamentos testados para indução da transdiferenciação de elementos traqueais, baseados em protocolos estabelecidos para outras gramíneas. Análises de expressão gênica por RT-qPCR foram utilizadas para caracterizar a variação da expressão de genes-alvo durante este processo. Ademais, as paredes celulares das células em suspensão de cana-de-açúcar foram digeridas com um coquetel de hidrolases para a produção de protoplastos. A cultura de células em suspensão de cana-de-açúcar e suas aplicações aqui estabelecidas poderão ser utilizadas na elucidação de aspectos únicos do processo de deposição de parede celular secundária em gramíneas C4 / The physicochemical features of the cell wall represent a major bottleneck for the processing of cell wall polysaccharides present in biomass into fermentable sugars, a fact known as plant biomass recalcitrance. Biofuels production from biomass requires a better understanding on the molecular mechanisms underlying secondary cell wall deposition and lignin metabolism. In this context, most of the current knowledge has been generated in eudicots species, whereas significantly less is known for grasses, despite of their great potential for biomass accumulation. Therefore, the development of tools that allow the discovery of specific aspects of C4 grasses secondary cell walls is of great interest, because this knowledge cannot be extrapolated from data generated for eudicots. In the present work, we aimed to develop suspension cell cultures as a tool for the study of secondary cell wall metabolism in C4 grasses. For this purpose, three species were employed: Sorghum bicolor, Setaria viridis and sugarcane. Because of the recalcitrant nature of sorghum, only suspensions cells of S. viridis and sugarcane were successfully established. Subsequently, these cultures were used in an attempt to develop two applications to study secondary cell walls: i) xylogenic cultures, in which the suspension cells are induced to transdifferentiate into tracheary elements; and ii) a protoplast system to be used in transactivation assays to test the potential role of transcriptional factors in the regulation of secondary wall deposition. Only the suspension cultures of sugarcane showed a positive response to the tested treatments for the induction of tracheary elements formation, which were based on modifications of previous protocols established for other grasses. Gene expression analysis by RT-qPCR was used to characterize the variation of the expression of target genes during this process. Moreover, the cell walls of sugarcane suspension cells were digested with a cocktail of hydrolases to produce protoplasts, which were used in transactivation assays between transcriptional factors known to be involved in secondary cell wall deposition and their putative target genes, as a proof-of-concept. The sugarcane suspension cells and their applications established in this work might be used to further elucidate unique aspects of secondary cell wall deposition in C4 grasses

INTRODUÇÃO: Indivíduos com SZ (esquizofrenia) fumam até três vezes mais que a taxa da população em geral. Constatou-se que fumantes com esquizofrenia fumam mais intensamente do que comparados com fumantes não esquizofrênicos. Adicionalmente, existem relatos não sistemáticos de que apesar de alta taxa de tabagismo, os esquizofrênicos apresentam proporcionalmente pouca lesão pulmonar comparado com tabagistas de igual consumo sem esquizofrenia. Esta diferença, se confirmada, poderia sugerir mecanismos diferentes de reação a agentes exógenos nos sistema respiratório, e entre estes mecanismos diferentes poderia estar o sistema de complemento, já evidenciado em estudos do grupo de pesquisa, porém sem controle para tabagismo. Este estudo investigou se a capacidade de difusão pulmonar em SZ é maior que em NSZ, e se o sistema complemento C3 e C4 é diferente entre SZ e NSZ e ao mesmo tempo está associado a difusão pulmonar de forma diferente em SZ e NSZ. OBJETIVOS: comparar a capacidade de difusão pulmonar e complemento C3 e C4 em pacientes fumantes com e sem esquizofrenia e analisar se existe evidência de mecanismos diferentes mediando prejuízo na capacidade de difusão em tabagistas com e sem SZ. MÉTODOS: esse é um estudo caso controle pareado, desenhado para ser multicêntrico, no momento descrevendo resultados de um centro. Recrutados 30 tabagistas sendo 15 SZ e 15 NSZ pareados por sexo, idade e tempo de tabagismo. Foram medidos complemento C3 e C4, espirometria e difusão pulmonar, dependência de nicotina pelo Teste de Fargerstrom e psicopatologia psiquiátrica nos portadores de esquizofrenia pelo Escala Breve de Avaliação Psiquiátrica (BPRS). Os pacientes foram oriundos do centro colaborador do estudo no HCPA. RESULTADOS: C3 foi significantemente maior em SZ quando comparado com controles (p=0,041), e C4 não mostrou diferença. Houve associação negativa entre o C4 e a capacidade de difusão somente no grupo controle (r=-0,692; p=0,009), sem diferença significativa no grupo de esquizofrênicos (r=0,451; p=0,141). Os grupos foram equivalentes em idade, grau de dependência de nicotina, porém foram diferentes em relação a ocupação (p=0,001). O grupo de esquizofrênicos apresenta maior proporção de desempregados e em benefício do que os controles. Desta forma, apesar de C3 mais aumentado em esquizofrênicos, este sistema aparentemente não media perda de difusão pulmonar, enquanto que aparentemente C4 mostra diferença quanto a prejuízo de difusão em esquizofrênicos tabagistas (maior C4 associado a menor capacidade de difusão somente nos tabagistas sem esquizofrenia). CONCLUSÃO: Quanto ao sistema complemento, houve maior ativação do C3 em tabagistas portadores de esquizofrenia comparados com tabagistas sem esquizofrenia, o que corrobora pesquisas anteriores que descrevem ativação do sistema complemento na SZ indicado pelo aumento dos níveis de C3. Curiosamente, somente nos controles tabagistas foi identificada associação entre aumento de C4 e redução da capacidade de difusão pulmonar. Nos pacientes com esquizofrenia não houve relação entre ativação de C4 e prejuÍzo de difusão pulmonar, o que sugere um padrão de ativação do sistema de complemento diferente dos sujeitos normais, preferencialmente pela via C3 e não pela via C4. Este fator não parece estar afetado pela diferença em escolaridade e trabalho, visto que era esperado que o aumento fosse maior nos esquizofrênicos devido a maior gravidade representada por menor índice de trabalho e menor escolaridade. Este estudo, se confirmado em amostras maiores envolvendo os outros centros colaboradores, pode confirmar existência de mecanismos diferentes de reação inflamatória em esquizofrenia. / Background: Subjects with SZ (schizophrenia) smoke up to three times the rate of the general population. It was found that smokers with schizophrenia smoke more intensely than smokers compared with non-psychiatric. Additionally, there are no systematic reports that despite high rates of smoking, people with schizophrenia have proportionately less lung injury compared with smokers without schizophrenia equal consumption. This difference, if confirmed, would suggest different mechanisms of response to exogenous agents in the respiratory system, and between these different mechanisms could be the complement system, as evidenced in studies of the research group, but not control for smoking. This study investigated whether the pulmonary diffusion capacity in SZ is higher than in non-SZ, and the complement C3 and C4 is different between SZ and NSZ and if at the same time is associated with pulmonary diffusion differently in SZ and NSZ. OBJECTIVES: To compare the pulmonary diffusion capacity and complement C3 and C4 in smokers with and without schizophrenia and examine whether there is evidence of different mechanisms mediating impaired diffusion capacity in smokers with and without SZ. METHODS: This is a matched case-control study, designed as a multicenter, when describing the results of a center. Recruited 30 smokers and 15 non-schizophrenics and 15 schizophrenics matched for sex, age and duration of smoking. We measured C3 and C4 complement, spirometry and DLCO, nicotine dependence and the test Fargerstrom psychiatric psychopathology in patients with schizophrenia by Brief Psychiatric Rating Scale (BPRS). The patients came from the study's collaborating center at HCPA. RESULTS: C3 was significantly higher in SZ compared to controls (p = 0.041), and C4 showed no difference. There was a negative association between C4 and the ability to broadcast only in the control group (r =- 0.692, p = 0.009), no significant difference in the schizophrenic group (r = 0.451, p = 0.141). The groups were equivalent in age, degree of nicotine dependence, but were different in relation to occupation (p = 0.001). The schizophrenic group has a higher proportion of unemployed and for the benefit of the controls. Thus, although most of C3 increased in schizophrenics, this system apparently did not measure loss of pulmonary diffusion, while C4 shows apparent difference in the loss of diffusion in schizophrenic smokers (greater C4 associated with a lower diffusion capacity in smokers without schizophrenia only) . CONCLUSION: As the complement system, activation of C3 was higher in smokers with schizophrenia compared with smokers without schizophrenia, which corroborates previous studies that describe activation of the complement system in SZ indicated by increased levels of C3. Interestingly, only smokers in controls been identified association between increased C4 and reduction of pulmonary diffusion capacity. In patients with schizophrenia there was no relationship between activation of C4 and prejuízo pulmonary diffusion, which suggests a pattern of activation of the complement system different from normal subjects, preferably through C3 and not via C4. This factor does not seem to be affected by the difference in schooling and work, as it was expected that the increase was greater in schizophrenics because of greater severity represented by lower rates of work and less schooling. This study, if confirmed in larger samples involving other collaborating centers, can confirm the existence of different mechanisms of inflammatory response in schizophrenia.

INTRODUÇÃO: Indivíduos com SZ (esquizofrenia) fumam até três vezes mais que a taxa da população em geral. Constatou-se que fumantes com esquizofrenia fumam mais intensamente do que comparados com fumantes não esquizofrênicos. Adicionalmente, existem relatos não sistemáticos de que apesar de alta taxa de tabagismo, os esquizofrênicos apresentam proporcionalmente pouca lesão pulmonar comparado com tabagistas de igual consumo sem esquizofrenia. Esta diferença, se confirmada, poderia sugerir mecanismos diferentes de reação a agentes exógenos nos sistema respiratório, e entre estes mecanismos diferentes poderia estar o sistema de complemento, já evidenciado em estudos do grupo de pesquisa, porém sem controle para tabagismo. Este estudo investigou se a capacidade de difusão pulmonar em SZ é maior que em NSZ, e se o sistema complemento C3 e C4 é diferente entre SZ e NSZ e ao mesmo tempo está associado a difusão pulmonar de forma diferente em SZ e NSZ. OBJETIVOS: comparar a capacidade de difusão pulmonar e complemento C3 e C4 em pacientes fumantes com e sem esquizofrenia e analisar se existe evidência de mecanismos diferentes mediando prejuízo na capacidade de difusão em tabagistas com e sem SZ. MÉTODOS: esse é um estudo caso controle pareado, desenhado para ser multicêntrico, no momento descrevendo resultados de um centro. Recrutados 30 tabagistas sendo 15 SZ e 15 NSZ pareados por sexo, idade e tempo de tabagismo. Foram medidos complemento C3 e C4, espirometria e difusão pulmonar, dependência de nicotina pelo Teste de Fargerstrom e psicopatologia psiquiátrica nos portadores de esquizofrenia pelo Escala Breve de Avaliação Psiquiátrica (BPRS). Os pacientes foram oriundos do centro colaborador do estudo no HCPA. RESULTADOS: C3 foi significantemente maior em SZ quando comparado com controles (p=0,041), e C4 não mostrou diferença. Houve associação negativa entre o C4 e a capacidade de difusão somente no grupo controle (r=-0,692; p=0,009), sem diferença significativa no grupo de esquizofrênicos (r=0,451; p=0,141). Os grupos foram equivalentes em idade, grau de dependência de nicotina, porém foram diferentes em relação a ocupação (p=0,001). O grupo de esquizofrênicos apresenta maior proporção de desempregados e em benefício do que os controles. Desta forma, apesar de C3 mais aumentado em esquizofrênicos, este sistema aparentemente não media perda de difusão pulmonar, enquanto que aparentemente C4 mostra diferença quanto a prejuízo de difusão em esquizofrênicos tabagistas (maior C4 associado a menor capacidade de difusão somente nos tabagistas sem esquizofrenia). CONCLUSÃO: Quanto ao sistema complemento, houve maior ativação do C3 em tabagistas portadores de esquizofrenia comparados com tabagistas sem esquizofrenia, o que corrobora pesquisas anteriores que descrevem ativação do sistema complemento na SZ indicado pelo aumento dos níveis de C3. Curiosamente, somente nos controles tabagistas foi identificada associação entre aumento de C4 e redução da capacidade de difusão pulmonar. Nos pacientes com esquizofrenia não houve relação entre ativação de C4 e prejuÍzo de difusão pulmonar, o que sugere um padrão de ativação do sistema de complemento diferente dos sujeitos normais, preferencialmente pela via C3 e não pela via C4. Este fator não parece estar afetado pela diferença em escolaridade e trabalho, visto que era esperado que o aumento fosse maior nos esquizofrênicos devido a maior gravidade representada por menor índice de trabalho e menor escolaridade. Este estudo, se confirmado em amostras maiores envolvendo os outros centros colaboradores, pode confirmar existência de mecanismos diferentes de reação inflamatória em esquizofrenia. / Background: Subjects with SZ (schizophrenia) smoke up to three times the rate of the general population. It was found that smokers with schizophrenia smoke more intensely than smokers compared with non-psychiatric. Additionally, there are no systematic reports that despite high rates of smoking, people with schizophrenia have proportionately less lung injury compared with smokers without schizophrenia equal consumption. This difference, if confirmed, would suggest different mechanisms of response to exogenous agents in the respiratory system, and between these different mechanisms could be the complement system, as evidenced in studies of the research group, but not control for smoking. This study investigated whether the pulmonary diffusion capacity in SZ is higher than in non-SZ, and the complement C3 and C4 is different between SZ and NSZ and if at the same time is associated with pulmonary diffusion differently in SZ and NSZ. OBJECTIVES: To compare the pulmonary diffusion capacity and complement C3 and C4 in smokers with and without schizophrenia and examine whether there is evidence of different mechanisms mediating impaired diffusion capacity in smokers with and without SZ. METHODS: This is a matched case-control study, designed as a multicenter, when describing the results of a center. Recruited 30 smokers and 15 non-schizophrenics and 15 schizophrenics matched for sex, age and duration of smoking. We measured C3 and C4 complement, spirometry and DLCO, nicotine dependence and the test Fargerstrom psychiatric psychopathology in patients with schizophrenia by Brief Psychiatric Rating Scale (BPRS). The patients came from the study's collaborating center at HCPA. RESULTS: C3 was significantly higher in SZ compared to controls (p = 0.041), and C4 showed no difference. There was a negative association between C4 and the ability to broadcast only in the control group (r =- 0.692, p = 0.009), no significant difference in the schizophrenic group (r = 0.451, p = 0.141). The groups were equivalent in age, degree of nicotine dependence, but were different in relation to occupation (p = 0.001). The schizophrenic group has a higher proportion of unemployed and for the benefit of the controls. Thus, although most of C3 increased in schizophrenics, this system apparently did not measure loss of pulmonary diffusion, while C4 shows apparent difference in the loss of diffusion in schizophrenic smokers (greater C4 associated with a lower diffusion capacity in smokers without schizophrenia only) . CONCLUSION: As the complement system, activation of C3 was higher in smokers with schizophrenia compared with smokers without schizophrenia, which corroborates previous studies that describe activation of the complement system in SZ indicated by increased levels of C3. Interestingly, only smokers in controls been identified association between increased C4 and reduction of pulmonary diffusion capacity. In patients with schizophrenia there was no relationship between activation of C4 and prejuízo pulmonary diffusion, which suggests a pattern of activation of the complement system different from normal subjects, preferably through C3 and not via C4. This factor does not seem to be affected by the difference in schooling and work, as it was expected that the increase was greater in schizophrenics because of greater severity represented by lower rates of work and less schooling. This study, if confirmed in larger samples involving other collaborating centers, can confirm the existence of different mechanisms of inflammatory response in schizophrenia.

INTRODUÇÃO: Indivíduos com SZ (esquizofrenia) fumam até três vezes mais que a taxa da população em geral. Constatou-se que fumantes com esquizofrenia fumam mais intensamente do que comparados com fumantes não esquizofrênicos. Adicionalmente, existem relatos não sistemáticos de que apesar de alta taxa de tabagismo, os esquizofrênicos apresentam proporcionalmente pouca lesão pulmonar comparado com tabagistas de igual consumo sem esquizofrenia. Esta diferença, se confirmada, poderia sugerir mecanismos diferentes de reação a agentes exógenos nos sistema respiratório, e entre estes mecanismos diferentes poderia estar o sistema de complemento, já evidenciado em estudos do grupo de pesquisa, porém sem controle para tabagismo. Este estudo investigou se a capacidade de difusão pulmonar em SZ é maior que em NSZ, e se o sistema complemento C3 e C4 é diferente entre SZ e NSZ e ao mesmo tempo está associado a difusão pulmonar de forma diferente em SZ e NSZ. OBJETIVOS: comparar a capacidade de difusão pulmonar e complemento C3 e C4 em pacientes fumantes com e sem esquizofrenia e analisar se existe evidência de mecanismos diferentes mediando prejuízo na capacidade de difusão em tabagistas com e sem SZ. MÉTODOS: esse é um estudo caso controle pareado, desenhado para ser multicêntrico, no momento descrevendo resultados de um centro. Recrutados 30 tabagistas sendo 15 SZ e 15 NSZ pareados por sexo, idade e tempo de tabagismo. Foram medidos complemento C3 e C4, espirometria e difusão pulmonar, dependência de nicotina pelo Teste de Fargerstrom e psicopatologia psiquiátrica nos portadores de esquizofrenia pelo Escala Breve de Avaliação Psiquiátrica (BPRS). Os pacientes foram oriundos do centro colaborador do estudo no HCPA. RESULTADOS: C3 foi significantemente maior em SZ quando comparado com controles (p=0,041), e C4 não mostrou diferença. Houve associação negativa entre o C4 e a capacidade de difusão somente no grupo controle (r=-0,692; p=0,009), sem diferença significativa no grupo de esquizofrênicos (r=0,451; p=0,141). Os grupos foram equivalentes em idade, grau de dependência de nicotina, porém foram diferentes em relação a ocupação (p=0,001). O grupo de esquizofrênicos apresenta maior proporção de desempregados e em benefício do que os controles. Desta forma, apesar de C3 mais aumentado em esquizofrênicos, este sistema aparentemente não media perda de difusão pulmonar, enquanto que aparentemente C4 mostra diferença quanto a prejuízo de difusão em esquizofrênicos tabagistas (maior C4 associado a menor capacidade de difusão somente nos tabagistas sem esquizofrenia). CONCLUSÃO: Quanto ao sistema complemento, houve maior ativação do C3 em tabagistas portadores de esquizofrenia comparados com tabagistas sem esquizofrenia, o que corrobora pesquisas anteriores que descrevem ativação do sistema complemento na SZ indicado pelo aumento dos níveis de C3. Curiosamente, somente nos controles tabagistas foi identificada associação entre aumento de C4 e redução da capacidade de difusão pulmonar. Nos pacientes com esquizofrenia não houve relação entre ativação de C4 e prejuÍzo de difusão pulmonar, o que sugere um padrão de ativação do sistema de complemento diferente dos sujeitos normais, preferencialmente pela via C3 e não pela via C4. Este fator não parece estar afetado pela diferença em escolaridade e trabalho, visto que era esperado que o aumento fosse maior nos esquizofrênicos devido a maior gravidade representada por menor índice de trabalho e menor escolaridade. Este estudo, se confirmado em amostras maiores envolvendo os outros centros colaboradores, pode confirmar existência de mecanismos diferentes de reação inflamatória em esquizofrenia. / Background: Subjects with SZ (schizophrenia) smoke up to three times the rate of the general population. It was found that smokers with schizophrenia smoke more intensely than smokers compared with non-psychiatric. Additionally, there are no systematic reports that despite high rates of smoking, people with schizophrenia have proportionately less lung injury compared with smokers without schizophrenia equal consumption. This difference, if confirmed, would suggest different mechanisms of response to exogenous agents in the respiratory system, and between these different mechanisms could be the complement system, as evidenced in studies of the research group, but not control for smoking. This study investigated whether the pulmonary diffusion capacity in SZ is higher than in non-SZ, and the complement C3 and C4 is different between SZ and NSZ and if at the same time is associated with pulmonary diffusion differently in SZ and NSZ. OBJECTIVES: To compare the pulmonary diffusion capacity and complement C3 and C4 in smokers with and without schizophrenia and examine whether there is evidence of different mechanisms mediating impaired diffusion capacity in smokers with and without SZ. METHODS: This is a matched case-control study, designed as a multicenter, when describing the results of a center. Recruited 30 smokers and 15 non-schizophrenics and 15 schizophrenics matched for sex, age and duration of smoking. We measured C3 and C4 complement, spirometry and DLCO, nicotine dependence and the test Fargerstrom psychiatric psychopathology in patients with schizophrenia by Brief Psychiatric Rating Scale (BPRS). The patients came from the study's collaborating center at HCPA. RESULTS: C3 was significantly higher in SZ compared to controls (p = 0.041), and C4 showed no difference. There was a negative association between C4 and the ability to broadcast only in the control group (r =- 0.692, p = 0.009), no significant difference in the schizophrenic group (r = 0.451, p = 0.141). The groups were equivalent in age, degree of nicotine dependence, but were different in relation to occupation (p = 0.001). The schizophrenic group has a higher proportion of unemployed and for the benefit of the controls. Thus, although most of C3 increased in schizophrenics, this system apparently did not measure loss of pulmonary diffusion, while C4 shows apparent difference in the loss of diffusion in schizophrenic smokers (greater C4 associated with a lower diffusion capacity in smokers without schizophrenia only) . CONCLUSION: As the complement system, activation of C3 was higher in smokers with schizophrenia compared with smokers without schizophrenia, which corroborates previous studies that describe activation of the complement system in SZ indicated by increased levels of C3. Interestingly, only smokers in controls been identified association between increased C4 and reduction of pulmonary diffusion capacity. In patients with schizophrenia there was no relationship between activation of C4 and prejuízo pulmonary diffusion, which suggests a pattern of activation of the complement system different from normal subjects, preferably through C3 and not via C4. This factor does not seem to be affected by the difference in schooling and work, as it was expected that the increase was greater in schizophrenics because of greater severity represented by lower rates of work and less schooling. This study, if confirmed in larger samples involving other collaborating centers, can confirm the existence of different mechanisms of inflammatory response in schizophrenia.

As características físico-químicas da parede celular constituem um grande gargalo na obtenção dos açúcares fermentáveis a partir dos polissacarídeos de parede celular presentes na biomassa, fato conhecido como recalcitrância da biomassa vegetal. A utilização da biomassa na produção de biocombustíveis requer um melhor entendimento sobre os mecanismos que permeiam os processos de deposição de parede celular e metabolismo de lignina. Nesse contexto, a maior parte do conhecimento foi gerado em espécies eudicotiledôneas, havendo uma significativa lacuna para gramíneas, apesar do seu grande potencial para acúmulo de biomassa. Portanto, há uma necessidade de se estabelecer ferramentas-modelos que permitam elucidar características exclusivas da parede celular secundária de gramíneas C4, cujo conhecimento não pode ser extrapolado a partir de eudicotiledôneas. O presente trabalho propôs estabelecer um sistema de células em suspensão como ferramenta-modelo em estudos sobre parede celular secundária em gramíneas C4. Para tal, três espécies foram inclusas: Sorghum bicolor, Setaria viridis e cana-de-açúcar. Devido às características recalcitrantes do sorgo, apenas as suspensões celulares de S. viridis e cana-de-açúcar foram estabelecidas. Subsequentemente, estas culturas foram utilizadas na tentativa de se desenvolver duas aplicações para o estudo de parede secundária: i) culturas xilogênicas, em que as células em suspensão são induzidas a se transdiferenciar em elementos traqueais; e ii) sistema de protoplastos para ensaios de transativação para testar o potencial papel de fatores de transcrição na regulação transcricional da deposição de parede celular. Somente as culturas de cana-de-açúcar responderam aos tratamentos testados para indução da transdiferenciação de elementos traqueais, baseados em protocolos estabelecidos para outras gramíneas. Análises de expressão gênica por RT-qPCR foram utilizadas para caracterizar a variação da expressão de genes-alvo durante este processo. Ademais, as paredes celulares das células em suspensão de cana-de-açúcar foram digeridas com um coquetel de hidrolases para a produção de protoplastos. A cultura de células em suspensão de cana-de-açúcar e suas aplicações aqui estabelecidas poderão ser utilizadas na elucidação de aspectos únicos do processo de deposição de parede celular secundária em gramíneas C4 / The physicochemical features of the cell wall represent a major bottleneck for the processing of cell wall polysaccharides present in biomass into fermentable sugars, a fact known as plant biomass recalcitrance. Biofuels production from biomass requires a better understanding on the molecular mechanisms underlying secondary cell wall deposition and lignin metabolism. In this context, most of the current knowledge has been generated in eudicots species, whereas significantly less is known for grasses, despite of their great potential for biomass accumulation. Therefore, the development of tools that allow the discovery of specific aspects of C4 grasses secondary cell walls is of great interest, because this knowledge cannot be extrapolated from data generated for eudicots. In the present work, we aimed to develop suspension cell cultures as a tool for the study of secondary cell wall metabolism in C4 grasses. For this purpose, three species were employed: Sorghum bicolor, Setaria viridis and sugarcane. Because of the recalcitrant nature of sorghum, only suspensions cells of S. viridis and sugarcane were successfully established. Subsequently, these cultures were used in an attempt to develop two applications to study secondary cell walls: i) xylogenic cultures, in which the suspension cells are induced to transdifferentiate into tracheary elements; and ii) a protoplast system to be used in transactivation assays to test the potential role of transcriptional factors in the regulation of secondary wall deposition. Only the suspension cultures of sugarcane showed a positive response to the tested treatments for the induction of tracheary elements formation, which were based on modifications of previous protocols established for other grasses. Gene expression analysis by RT-qPCR was used to characterize the variation of the expression of target genes during this process. Moreover, the cell walls of sugarcane suspension cells were digested with a cocktail of hydrolases to produce protoplasts, which were used in transactivation assays between transcriptional factors known to be involved in secondary cell wall deposition and their putative target genes, as a proof-of-concept. The sugarcane suspension cells and their applications established in this work might be used to further elucidate unique aspects of secondary cell wall deposition in C4 grasses

No description available.

A concentração de CO2 na atmosfera tem aumentado progressivamente nos últimos anos. Este aumento é atribuído em sua maior parte à ação humana e à atividades como mudanças no uso da terra, desflorestamento e uso de combustíveis fósseis. É previsto que as mudanças do clima decorrentes desse aumento do CO2 irão impactar de forma significativa na agricultura. A cana-de-açúcar é uma planta de grande importância na economia mundial devido ao seu uso na indústria sucroalcoleira. Neste sentido, conhecer como o aumento de CO2 irá impactar nesta cultura é de importância estratégica para o país e para o mundo. Experimentos com cana-de-açúcar cultivada em elevado CO2 têm demonstrado aumento na taxa de fotossíntese, biomassa e no conteúdo de sacarose. Especula-se que a maior taxa de fotossíntese observada nesses experimentos é regulada por meio da taxa de transporte de elétrons, uma vez que genes relacionados a este processo foram observados com maior expressão em alto CO2. No entanto, os mecanismos que envolvem este processo ainda são desconhecidos. Com o objetivo de compreender os mecanismos envolvidos na regulação e funcionamento da fotossíntese em cana-de-açúcar, este trabalho apresenta dados sobre o ciclo diário de fotossíntese e carboidratos não estruturais, bem como dados fisiológicos, bioquímicos e de expressão gênica de plantas cultivadas em atmosfera enriquecida de CO2. Os resultados obtidos mostram que a regulação da fotossíntese em alto CO2 é dada pela manutenção do crescimento que esta condição proporciona às plantas, uma vez que o cultivo no vaso limita o crescimento na raiz e leva a um possível déficit hídrico. Genes e proteínas relacionados direta ou indiretamente ao processo de transporte de elétrons foram encontrados com expressão diferencial, corroborando os dados obtidos nas medidas in vivo. Por outro lado, os dados mostram pouca variação no sistema de captação de CO2, indicando que a principal regulação da fotossíntese em cana-de-açúcar ocorre por meio do sistema de captura de luz. Foram observados proteínas e genes relacionados com o conteúdo de açúcares e com o crescimento, que podem ser pontos importantes de regulação da fotossíntese em cana-de-açúcar. Com os dados obtidos foi possível inferir que o aumento do CO2 na atmosfera irá beneficiar as plantas de cana-de-açúcar, sendo que pontos de regulação descritos neste trabalho têm potencial de utilização como ferramentas que auxiliem na determinação de cultivares mais produtivos. / The atmospheric CO2 concentration has been increasing progressively along the last years. This increase is attributed mainly to humans action and to land use changes, deforestation and fossil fuel burning. Is it predicted that the global climate changes resulting from CO2 increase will impact significantly agriculture. Sugarcane is very important for worlds economy due to its use for sugar and alcohol industry. In this way, the knowledge of how sugarcane will respond at elevated CO2 is important to design strategies for biofuel production and use in Brazil and in the world. In experiments with sugarcane grown under elevated CO2 sugarcane plants have shown an increase in photosynthesis, biomass and sucrose content. It was then speculated that the higher photosynthesis observed in these experiments might be regulated by electron transport rates, since genes related to this process were observed with higher expression in elevated CO2. However, the mechanisms that are related with this process are still unknown. The aim of this thesis was to understand the mechanisms related in the regulation and functioning of photosynthesis in sugarcane in elevated CO2. This work presents data about diurnal cycle of photosynthesis and non structural carbohydrates, physiology, biochemistry and gene expression. The results show that photosynthesis regulation in elevated CO2 is linked with the plant growth that remains under these conditions, since the pots cause roots growth limitations and leads a possibly water deficit. Genes and proteins were found that are related directly or indirectly to electron transport process as seen from differential expression. This corroborates the data obtained from in vivo measurements. On the other hand, our data show little variation in CO2 capture system, indicating that the mainly regulations of photosynthesis in sugarcane occurs due changes in light capture system. Proteins and genes have been observed that associated with sugar content and growth. These might be key for understanding regulation of photosynthesis in sugarcane. With the data obtained it is possible to speculate that elevation of CO2 will benefit the sugarcane plants in the future. Also, the regulation points described in this work have potential to be used as tools to help finding more productive cultivars.

Les objectifs de ce travail étaient d’approfondir les connaissances sur les capacités d’adaptation des diatomées à différentes concentrations de CO2 et plus précisément sur l’implication des CCM dans l’assimilation du carbone minéral dissous. Des études sur la physiologie, les enzymes de différentes voies métaboliques et des analyses de transcriptomique et de protéomique ont été réalisées. Nous avons observé que les espèces de diatomées étudiées étaient capables de réguler leurs systèmes de concentration du carbone minéral suivant les conditions environnementales. Certaines semblent utiliser préférentiellement le CO2 ou le bicarbonate tandis que d’autres espèces utilisent les deux. L’activité des anhydrases carbonique est fortement induite en faible concentration de CO2. Nos travaux montrent cependant, que l’activité de cette enzyme est variable d’une espèce à l’autre. Nous avons aussi observé que dans la majorité des diatomées que nous avons étudiées, la photosynthèse de type C3 et non de type C4 est présente, apportant ainsi un éclairage à une véritable controverse sur le métabolisme du carbone chez les diatomées. Nos travaux soulignent de plus, une grande diversité de stratégies de CCM chez les diatomées. Chez T. pseudonana, une nouvelle protéine, LCIP63, a été observée en conditions de faible concentration de CO2. Son rôle physiologique est actuellement inconnu ouvrant de nouvelles perspectives de recherche. / The objectives of this work were to improve the knowledge on ability of diatoms to scope with different CO2 concentrations and to study their carbon concentrating mechanisms (CCM). Studies of their physiology, their metabolic enzymes, and analyses at transcriptomic and proteomic levels were performed. In all studied diatoms, the CCMs can be regulated according to CO2 availability in the environment. Some diatoms seem to use preferentially CO2, others, bicarbonate and some can use both. The carbonic anhydrase (CA) activity is strongly induced when cells were grown at low vs high CO2. However, our work shows that CA activity is highly variable among the different diatoms. Most of the studied diatoms perform a C3 photosynthesis and not C4 photosynthesis. In diatoms, there is a huge diversity in the CCM strategy. A new protein, LCIP63, was observed when T. pseudonana was grown under low CO2. The physiological role of this protein is yet unknown and this finding opens new research perspectives.

1) Geminiviruses are a group of plant viruses which contain circular single stranded DNA molecules as their genomes and the capsid consists of two icosahedra fused together to form twinned or geminate particles. The largest genus in the family Geminiviridae is that of begomoviruses which are of two kinds; the monopartite begomoviruses which contain only one circular single stranded DNA molecule as their genome and the bipartite begomoviruses which contain two circular single stranded DNA molecules (designated DNA-A and DNA-B) as their genomes. In bipartite viruses, the two DNA molecules are enclosed in separate geminate capsids. 2) In bipartite begomoviruses, the DNA-A encodes the proteins essential for replication and encapsidation of the viral genome while the DNA-B encodes the proteins involved in movement. The DNA-B encodes two proteins: the BV1 or the nuclear shuttle protein (NSP) and BC1 or the cell-to-cell movement protein. Geminiviruses have DNA genomes which replicate inside the host cell nucleus. The NSP, which contains nuclear localization signal, brings the viral DNA from nucleus to the cytoplasm while the BC1 serves to take the viral genome to the cell periphery for movement to the neighbouring cell through the plasmodesmata. 3) The monopartite begomoviruses do not contain DNA-B (which, in bipartite begomoviruses, encodes the proteins involved in movement) and it has been suggested that some of the proteins encoded by DNA-A take up the movement function. Based on studies on TYLCV and CLCuV, a model has been proposed for the movement of monopartite begomoviruses according to which the coat protein (CP) of monopartite begomoviruses serves as the functional equivalent of the NSP of bipartite begomoviruses 4) The present thesis deals with the biochemical characterization of the C4 protein of the monopartite begomovirus CLCuKV-Dab. As stated in statement (3) above, the V2 and C4 proteins of monopartite begomoviruses have been implicated to be involved in cell-to¬cell movement of the viral genome. In TYLCV, both the proteins were shown to be localized to the cell periphery and could move from one cell to another through the plasmodesmata. Further, the V2 protein of CLCuKV-Dab was shown to interact with the coat protein and bind to single stranded DNA. The biochemical properties of the C4 protein needed to be elucidated in order to strengthen the proposal of its probable involvement in movement. 5) The objectives of the present study were: i) Bioinformatic analysis of the C4 protein of CLCuKV-Dab ii) Biochemical characterization of ATPase and pyrophosphatase activities of the C4 protein. iii) Studies on the effect of V2-C4 interaction on the enzymatic properties of C4. iv) Functional characterization of C4 in planta. 6) The FoldIndex© and PONDR analyses predicted the C4 protein of CLCuKV-Dab to be natively unfolded. Similarly, in PSIpred analysis, most of the C4 protein was predicted to be a random coil without any well-defined secondary structure. Further, the protein sequence was analyzed using the motifscan server. However, no motif for any specific function was predicted in the C4 Protein. 7) The C4 gene was initially cloned into pRSET-C vector and overexpressed as histidine tagged protein and the solubility of the protein was tested in various conditions including low temperature (18° C) after inducing the expression of the protein, buffers of various pH and different salt concentrations but the protein remained insoluble. Subsequently, the protein was purified under denaturing conditions and attempts were made to refold the protein but the protein precipitated during refolding. In order to get the C4 protein in soluble form, the C4 gene was subcloned into pGEX-5X2 vector and overexpressed as a GST-tagged fusion protein (GST-C4). Some of the GST-C4 protein was soluble which was purified by using GST-bind resin. The purified fusion protein was observed as a 37 kDa band on SDS-PAGE gel. The purified protein was accompanied by a degraded product of approximately 30 kDa size. Both the intact GST-C4 protein and the degraded product were detected in western blot analysis using anti-GST antibody. 8) Because C4 has been implicated to be involved in movement of monopartite begomoviruses and movement is an energy requiring process, it was of interest to determine if GST-C4 possesses ATPase activity. The purified GST-C4 protein was incubated with γ-[32P]-ATP, the product of the reaction was separated by thin layer chromatography and the chromatography plate was analyzed by phosphorimager. The hydrolysis of ATP by GST-C4 and the release of inorganic phosphate was clearly observed, suggesting that GST-C4 might possess ATPase activity. 9) The reaction conditions for the ATPase activity of GST-C4 were standardized. The activity increased linearly upto 2.60μM of the protein. The optimum temperature and pH for the ATPase activity were found to be 30 C and 6.0 respectively. The activity was inhibited by EDTA, suggesting that it is dependent on divalent metal ions. The activity was stimulated by Mg+2, Mn+2 and Zn+2 but inhibited by Ca+2ions. Further, in the time course experiment, it was observed that the ATPase activity increased linearly upto one hour. 10) The Km, Vmax and kcat for the ATPase activity of GST-C4 were found to be 51.72 ± 2.5 µM, 7.2 ± 0.54 nmoles/min/mg of the protein and 0.27 min-1 respectively. Some of the other virally encoded ATPases have been found to exhibit kcat similar to that found for GST-C4 but it is much lower than those of most of the prokaryotic and eukaryotic ATPases (as mentioned in Table 3.3, page 100, chapter 3). Further, the presence of the degraded product did not affect the kinetic constants as described in chapter 3, pages 95¬-98. It is possible that the enzymatic activity might increase upon interaction with some ligand. 11) In the absence of any putative ATP binding motifs, systematic deletions from N-and C-termini were made to delineate the regions of C4 important for the ATPase activity. GST-N∆15-C4 and GST-N∆30-C4 exhibited approximately 70 % reduction in the ATPase activity while all the C-terminal deletion mutants (GST-C∆10-C4, GST-C∆20¬C4 and GST-C∆30-C4) retained the activity similar to the full length GST-C4 protein. This suggested that the N-terminal region of C4 may contain the residues important for the ATPase activity of GST-C4. 12) In the N-terminal region of C4, there is a sequence CSSSSR which closely resembles the sequence present at the active site of phosphotyrosine phosphatases (CXXXXXR). However, GST-C4 did not catalyze the hydrolysis of p-Nitrophenyl phosphate, a substrate analogue commonly used to assay phosphotyrosine phosphatase activity. It was of interest to determine if the cysteine and arginine in this sequence are important for the ATPase activity of GST-C4. GST-R13A-C4 exhibited an approximately two fold reduction in Vmax suggesting that R13 in C4 may be catalytically important for the ATPase activity of GST-C4. On the other hand, the C8A mutation did not affect the ATPase activity of GST-C4. 13) The GST-C4 protein was tested for its ability to hydrolyze several other phosphate containing compounds as mentioned chapter 2, pages 53-55. Among these compounds, GST-C4 catalyzed the hydrolysis of sodium pyrophosphate, that is, GST-C4 exhibited an inorganic pyrophosphatase activity. 14) The reaction conditions for the inorganic pyrophosphatase activity of GST-C4 were initially standardized. The pyrophosphatase activity of GST-C4 increased linearly upto 3.38 µM of the protein. The optimum temperature and pH for the pyrophosphatase activity were found to be 37° C and 7.0 respectively. The pyrophosphatase activity was inhibited by EDTA, suggesting that it is dependent on divalent metal ions. The activity was most efficiently stimulated by Mg+2, although it was also stimulated by Mn+2and Zn+2but inhibited by Ca+2ions. Thus, the pyrophosphatase activity of GST-C4 resembles the family I inorganic pyrophosphatases in metal ion requirements. Further, the pyrophosphatase activity increased linearly upto 1 hour 30 minutes. 15) The Km, Vmax and Kcat for the pyrophosphatase activity of GST-C4 were found to be 0.76 ± 0.04 mM, 141.16 ± 20 nmoles/min/mg of the protein and 5.2 minrespectively. The kcat for the pyrophosphatase activity was approximately 20 fold higher than that for the ATPase activity (0.27 min-1). 16) GST-N∆15-C4 and GST-N∆30-C4 exhibited >70 % reduction in the pyrophosphatase activity, a finding similar to that for the ATPase activity. On the other hand, while GST-C∆10-C4 retained the activity similar to the full length GST-C4 protein, GST-C∆20-C4 and GST-C∆30-C4 exhibited 20 % and 60 % reduction in the pyrophosphatase activity, respectively, as compared to the full length GST-C4 protein. This suggested that the C-terminal region of C4 may also contain the residues important for the pyrophosphatase activity of GST-C4. However, the C-terminal deletion mutants retained the ATPase activity similar to the full length protein. 17) The pyrophosphatase activity of GST-C4 was stimulated more than three fold by several reducing agents. The C4 protein contains only one cysteine (at position 8 in the C4 sequence). This was the first clue that the cysteine may be important for the pyrophosphatase activity of the GST-C4 protein. Further, the pyrophosphatase activity of GST-C4 did not exhibit preference for a particular kind of reducing agent like that of the pyrophosphatase activity in Streptococcus faecalis. 18) GST-C8A-C4 exhibited more than two fold reduction in Vmax, suggesting that the C8 may be catalytically important for the pyrophosphatase activity of GST-C4. On the other hand, the R13A mutation did not affect the pyrophosphatase activity of the GST-C4 protein. Thus, it is possible that during catalysis, the cysteine thiolate of C4 makes a 19) The pyrophosphatase activity of GST-C4 was inhibited by vanadate and fluoride. Vanadate was found to be a competitive inhibitor with Ki 0.33 mM while fluoride was a non-competitive inhibitor with Ki 2.82 mM. A comparative account of the two enzymatic activities of GST-C4 is presented in table 6.1

A concentração de CO2 na atmosfera tem aumentado progressivamente nos últimos anos. Este aumento é atribuído em sua maior parte à ação humana e à atividades como mudanças no uso da terra, desflorestamento e uso de combustíveis fósseis. É previsto que as mudanças do clima decorrentes desse aumento do CO2 irão impactar de forma significativa na agricultura. A cana-de-açúcar é uma planta de grande importância na economia mundial devido ao seu uso na indústria sucroalcoleira. Neste sentido, conhecer como o aumento de CO2 irá impactar nesta cultura é de importância estratégica para o país e para o mundo. Experimentos com cana-de-açúcar cultivada em elevado CO2 têm demonstrado aumento na taxa de fotossíntese, biomassa e no conteúdo de sacarose. Especula-se que a maior taxa de fotossíntese observada nesses experimentos é regulada por meio da taxa de transporte de elétrons, uma vez que genes relacionados a este processo foram observados com maior expressão em alto CO2. No entanto, os mecanismos que envolvem este processo ainda são desconhecidos. Com o objetivo de compreender os mecanismos envolvidos na regulação e funcionamento da fotossíntese em cana-de-açúcar, este trabalho apresenta dados sobre o ciclo diário de fotossíntese e carboidratos não estruturais, bem como dados fisiológicos, bioquímicos e de expressão gênica de plantas cultivadas em atmosfera enriquecida de CO2. Os resultados obtidos mostram que a regulação da fotossíntese em alto CO2 é dada pela manutenção do crescimento que esta condição proporciona às plantas, uma vez que o cultivo no vaso limita o crescimento na raiz e leva a um possível déficit hídrico. Genes e proteínas relacionados direta ou indiretamente ao processo de transporte de elétrons foram encontrados com expressão diferencial, corroborando os dados obtidos nas medidas in vivo. Por outro lado, os dados mostram pouca variação no sistema de captação de CO2, indicando que a principal regulação da fotossíntese em cana-de-açúcar ocorre por meio do sistema de captura de luz. Foram observados proteínas e genes relacionados com o conteúdo de açúcares e com o crescimento, que podem ser pontos importantes de regulação da fotossíntese em cana-de-açúcar. Com os dados obtidos foi possível inferir que o aumento do CO2 na atmosfera irá beneficiar as plantas de cana-de-açúcar, sendo que pontos de regulação descritos neste trabalho têm potencial de utilização como ferramentas que auxiliem na determinação de cultivares mais produtivos. / The atmospheric CO2 concentration has been increasing progressively along the last years. This increase is attributed mainly to humans action and to land use changes, deforestation and fossil fuel burning. Is it predicted that the global climate changes resulting from CO2 increase will impact significantly agriculture. Sugarcane is very important for worlds economy due to its use for sugar and alcohol industry. In this way, the knowledge of how sugarcane will respond at elevated CO2 is important to design strategies for biofuel production and use in Brazil and in the world. In experiments with sugarcane grown under elevated CO2 sugarcane plants have shown an increase in photosynthesis, biomass and sucrose content. It was then speculated that the higher photosynthesis observed in these experiments might be regulated by electron transport rates, since genes related to this process were observed with higher expression in elevated CO2. However, the mechanisms that are related with this process are still unknown. The aim of this thesis was to understand the mechanisms related in the regulation and functioning of photosynthesis in sugarcane in elevated CO2. This work presents data about diurnal cycle of photosynthesis and non structural carbohydrates, physiology, biochemistry and gene expression. The results show that photosynthesis regulation in elevated CO2 is linked with the plant growth that remains under these conditions, since the pots cause roots growth limitations and leads a possibly water deficit. Genes and proteins were found that are related directly or indirectly to electron transport process as seen from differential expression. This corroborates the data obtained from in vivo measurements. On the other hand, our data show little variation in CO2 capture system, indicating that the mainly regulations of photosynthesis in sugarcane occurs due changes in light capture system. Proteins and genes have been observed that associated with sugar content and growth. These might be key for understanding regulation of photosynthesis in sugarcane. With the data obtained it is possible to speculate that elevation of CO2 will benefit the sugarcane plants in the future. Also, the regulation points described in this work have potential to be used as tools to help finding more productive cultivars.