The epidermal growth factor receptor (EGFR) is a transmembrane receptor tyrosine kinase integral in regulating cell growth, survival, and migration. EGFR signaling, which is dependent on localization of the receptor within lipid rafts, is often hijacked during colon tumorigenesis. Previous work has found that docosahexaenoic acid (DHA) is protective against colon cancer. This fatty acid is proposed to function in part by perturbing lipid rafts and thereby altering cell signaling. The overall objective of this work was to determine whether DHA alters EGFR function and signaling. We assessed EGFR localization and ligand-induced phosphorylation in YAMC cells treated with fatty acids. We found that DHA reduced the localization of EGFR to lipid rafts. Concomitant with altering receptor localization, DHA was found to increase EGFR phosphorylation. However, DHA paradoxically suppressed EGFR signal transduction. We found that DHA uniquely altered EGFR activity, and other long chain polyunsaturated fatty acid did not exert the same effect. We additionally observed similar effects on EGFR activation and signaling by feeding mice a diet enriched in fish oil (high in DHA), and this was attendant with reduced colon tumorigenesis. We next probed the mechanism by which DHA enhances EGFR phosphorylation. We found that DHA facilitates receptor dimerization to increase phosphorylation. We additionally identified Ras activation as the site of perturbation of signal transduction. DHA suppressed signal transduction by both changing the localization of EGFR within the plasma membrane and increasing receptor endocytosis and degradation. Lastly, we extended our observations into a wounding model. Although DHA uniquely altered ligand-stimulated EGFR activity, both DHA and EPA altered EGFR transactivation and signaling upon injury. This culminated in reduced wound healing in DHA and EPA treated cells. In an animal model, we found that diets enriched in either DHA or EPA altered EGFR signaling in the colonocytes of wounded animals. Overall, we found that DHA modifies EGFR signaling, which can be beneficial or detrimental for health depending on the disease state of an individual. These data help elucidate a mechanism by which DHA protects against colon cancer, as well as indicating a potential downside of n-3 PUFA therapy.

Colorectal cancer is the 4th most widespread cause of cancer mortality. One of the pathways that are involved in the development of colorectal cancer is the arachidonic acid metabolizing lipoxygenase (LOX) pathway. Inflammatory molecules formed from this pathway exert profound effects that may exacerbate the development and progression of colon and other cancers. 15 lipoxygenase-1 (15-LOX-1) is a member of LOX protein family that metabolizes primarily linoleic acid to 13-(S)-HODE. Several lines of evidence support an antiangiogenic role for 15-LOX-1, especially through 13-(S)-HODE. The expression of 15-LOX-1 is lost in colon cancer cells. Our aim in this thesis was to study whether 15-LOX-1 expression has an anticarcinogenic role, particularly on the metastatic and angiogenic potential of colon cancer cells. For this purpose, 15-LOX-1 was introduced into HCT-116 colon cancer cell lines. Having confirmed 15-LOX-1 expression and activity it was observed that expression of 15-LOX-1 significantly decreased cell proliferation, cell motility, anchorage-independent growth, migration and invasion across Matrigel, the expression of the metastasis-related MTA-1 protein, neoangiogenesis and induced apoptosis. Mechanistically, most of these effects were arbitrated by the 15-LOX-1 mediated inhibition of the inflammatory transcription factor NF-&kappa / B via the orphan nuclear receptor PPAR&gamma / . In conclusion, we propose that 15-LOX-1 has anti-tumorigenic properties and can be exploited for therapeutic benefits.

Colorectal cancer is the 4th most widespread cause of cancer mortality. One of the pathways that are involved in the development of colorectal cancer is the arachidonic acid metabolizing lipoxygenase (LOX) pathway. Inflammatory molecules formed from this pathway exert profound effects that may exacerbate the development and progression of colon and other cancers. 15 lipoxygenase-1 (15-LOX-1) is a member of LOX protein family that metabolizes primarily linoleic acid to 13-(S)-HODE. Several lines of evidence support an antiangiogenic role for 15-LOX-1, especially through 13-(S)-HODE. The expression of 15-LOX-1 is lost in colon cancer cells. Our aim in this thesis was to study whether 15-LOX-1 expression has an anticarcinogenic role, particularly on the metastatic and angiogenic potential of colon cancer cells. For this purpose, 15-LOX-1 was introduced into HCT-116 colon cancer cell lines. Having confirmed 15-LOX-1 expression and activity it was observed that expression of 15-LOX-1 significantly decreased cell proliferation, cell motility, anchorage-independent growth, migration and invasion across Matrigel, the expression of the metastasis-related MTA-1 protein, neoangiogenesis and induced apoptosis. Mechanistically, most of these effects were arbitrated by the 15-LOX-1 mediated inhibition of the inflammatory transcription factor NF-&kappa / B via the orphan nuclear receptor PPAR&gamma / . In conclusion, we propose that 15-LOX-1 has anti-tumorigenic properties and can be exploited for therapeutic benefits.

Microarray technology has become a dynamic tool in gene expression analysis because it allows for the simultaneous measurement of thousands of gene expressions. Uniqueness in experimental units and microarray data platforms, coupled with how gene expressions are obtained, make the field open for interesting research questions. In this dissertation, we present our investigations of two independent studies related to microarray data analysis. First, we study a recent platform in biology and bioinformatics that compares the quality of genetic information from exfoliated colonocytes in fecal matter with genetic material from mucosa cells within the colon. Using the intraclass correlation coe�cient (ICC) as a measure of reproducibility, we assess the reliability of density estimation obtained from preliminary analysis of fecal and mucosa data sets. Numerical findings clearly show that the distribution is comprised of two components. For measurements between 0 and 1, it is natural to assume that the data points are from a beta-mixture distribution. We explore whether ICC values should be modeled with a beta mixture or transformed first and fit with a normal mixture. We find that the use of mixture of normals in the inverse-probit transformed scale is less sensitive toward model mis-specification; otherwise a biased conclusion could be reached. By using the normal mixture approach to compare the ICC distributions of fecal and mucosa samples, we observe the quality of reproducible genes in fecal array data to be comparable with that in mucosa arrays. For microarray data, within-gene variance estimation is often challenging due to the high frequency of low replication studies. Several methodologies have been developed to strengthen variance terms by borrowing information across genes. However, even with such accommodations, variance may be initiated by the presence of outliers. For our second study, we propose a robust modification of optimal shrinkage variance estimation to improve outlier detection. In order to increase power, we suggest grouping standardized data so that information shared across genes is similar in distribution. Simulation studies and analysis of real colon cancer microarray data reveal that our methodology provides a technique which is insensitive to outliers, free of distributional assumptions, effective for small sample size, and data adaptive.

In this study, extracts from bark, leaves and catkins of Salix aegyptiaca L. were investigated for their antioxidant content by 2,2-diphenyl-2-picrylhydrazyl hydrate (DPPH) free radical quenching assay, total phenolic and total flavonoid assays. The highest antioxidant activity (19 ug/ml IC50 for inhibition of DPPH radical activity), total phenolic content (212 mg gallic acid equivalents/g of dried extract) and total flavonoid (479 mg catechin equivalents/g of dried extract) was observed in the ethanolic extract of bark. High performance liquid chromatography (HPLC) analyses revealed the presence of gallic acid, caffeic acid, vanillin and p-coumaric acid, myricetin, catechin, epigallocatechin gallate, rutin, quercetin as well as salicin. In addition, the anti-proliferative effects of the ethanolic extracts on colorectal cancer cell lines (HCT-116 and HT-29) were examined by an MTT cell viability assay while their apoptotic effects were assayed by acridine orange staining and caspase 3 activity. The results indicate that the ethanolic extract of bark of S. aegyptiaca can strongly inhibit cell proliferation and induces apoptosis in a dose dependent manner on both cell lines. We propose that extracts from this plant may be utilized as a source of health promoting antioxidants. Our data provide a perspective for more detailed study of biochemical pathways associated with the cancer preventive effects of active components of the extracts from S. aegyptiaca.

Intestinal epithelial differentiation entails the formation of highly specialized cells with specific absorptive, secretory, digestive and immune functions. Cell-cell and cell-microenvironment interactions appear to be crucial in determining the outcome of the differentiation process. Using the Caco-2 cell line that can undergo spontaneous differentiation when grown past confluency, we observed a loss of VCAM1 (vascular cell adhesion molecule-1) expression while ICAM1 (intercellular cell adhesion molecule-1) expression was seen to be stable in the course of differentiation. Protein kinase C theta (PKC&theta / ) acted downstream of PKC to inactivate Inhibitor of kappa B (IB) and activate NF-&kappa / B in the undifferentiated cells and this axis was inhibited in the differentiated cells. The increase in ICAM1 expression in the differentiated cells was due to a transcriptional upregulation by C/EBP. The protein expressions of both ICAM-1 and VCAM-1, however, were found to decrease in the course of differentiation, with both proteins getting post-translationally degraded in the lysosome. Functionally, a decrease in adhesion to HUVEC cells was observed in the differentiated Caco-2 cells. Thus, the regulation of ICAM-1 and VCAM-1, although both NF-B target genes, appear to be different in the course of epithelial differentiation. microRNAs are known to regulate many cellular pathways. miR-146a, which is known to target NF-&kappa / B, was shown to be highly upregulated in differentiated Caco-2 cells. As a predicted target of miR-146a, mRNA and protein expression of MMP16 was inversely correlated with miR-146a during differentiation of Caco-2 cells. miR-146a could bind to the 3&rsquo / UTR of MMP16 and ectopic expression of miR-146a resulted in a decreased mRNA and protein expression of MMP16 in the undifferentiated Caco-2 and HT-29 cells. Functionally, decreased gelatinase activity determined by gelatin zymography and reduced invasion and migration through Transwells was observed. In the final part of the thesis, the inhibition of NF-&kappa / B via PPAR&gamma / in 15-Lipoxygenase-1 (15LOX1) expressing cells was investigated. The expression of 15LOX1, a member of the inflammatory arachidonate cascade, could lower phosphorylation of I&kappa / B&alpha / and NF-&kappa / B DNA binding activity which was reversed with a 15LOX1 inhibitor. This inhibition was mediated by phospho-PPAR&gamma / , which in turn was phosphorylated by ERK1/2.

Der Wnt/β-catenin Signalweg reguliert zusammen mit anderen Signalkaskaden die Embryogenese sowie auch die Homöostase und die Proliferation der Stammzellen im adulten Organismus. Mutationen in Komponenten dieses Signaltransduktionsweges führen zu einer aberranten Aktivierung von β-catenin und wurden in vielen verschieden Krebsarten einschließlich Darmkrebs beobachtet. Die transkriptionelle Akivität von β-catenin wird von verschiedenen nukleären Kofaktoren beeinflusst. Hierzu zählen insbesondere die Proteine der Pygopus Familie, die in Drosophila eine essentielle Rolle im kanonischen Wnt-Signalweg spielen, in Vertebraten allerdings vielmehr Kontext abhängig agieren. Insbesondere Pygo2 ist hierbei vermutlich auch an der malignen Transformation verschiedener Zelltypen mit anschließender Ausbildung von Tumoren beteiligt. Auch wenn bereits gezeigt werden konnte, dass Pygo2 in Darmtumoren überexprimiert wird, ist bisher unbekannt, ob es tatsächlich eine Rolle bei der Entstehung von intestinalen Tumoren spielt. Anhand von genetischen Experimenten in der Maus zeigt diese Arbeit zum ersten Mal in vivo, dass Pygo2 für die normale Homöostase des Darms nicht essentiell ist, aber an der Ausbildung von Darmtumoren, welche durch eine Stabilisierung von β-catenin induziert werden, beteiligt ist. Weder im embryonalen noch im adulten Darm beeinflusste der konditionale Villin-Cre bedingte Knock-out von Pygo2 in epithelialen Zellen die normale embryonale Entwicklung oder die Homöostase im adulten Darm. Auch für die Regulation von Zielgenen des Wnt/β-catenin Signalweges unter physiologischen Bedingungen scheint Pygo2 funktionell redundant zu sein. Im Gegensatz dazu verhinderte der Verlust von Pygo2 die Entstehung von β-catenin induzierten intestinalen Tumoren und normalisierte die damit verbundene Hyperproliferation sowie die erhöhte Expression von Wnt/β-catenin Zielgenen und intestinalen Stammzellmarkern. Überraschenderweise konnte die Ausbildungen von Adenomen in ApcMin/+ Mäusen durch Deletion von Pygo2 nicht verhindert werden. Der Vergleich beider Mausmodelle ergab eine erhöhte Expression von BCL9-2 in den Adenomen der ApcMin/+ Mäuse aber nicht in den Hyperplasien, die durch aktiviertes β-catenin induziert wurden. Dies könnte darauf hinweisen, dass in Apc mutierten epithelialen Zellen BCL9-2 für die Tumorprogression verantwortlich ist. Weiterhin konnte gezeigt werden, dass sowohl der knock-down von Pygo2 als auch von BCL9-2 in human Kolonkarzinomzellen die Proliferation reduzierte. Anhand von immunohistochemischen Analysen des Phosphorylierungsstatus von ERK1/2, einem „downstream“ Effektor von K-ras, konnten außerdem pERK1/2 positive Zellen in den intestinalen Adenomen von ApcMin/+ Mäusen, nicht aber in hyperproliferierenden Zellen mit stabilisierten β-catenin nachgewiesen werden. Zusammenfassend weisen die Ergebnisse dieser Arbeit daraufhin, dass die Funktion von Pygo2 im Darm Kontext abhängig ist. Während in normalen epithelialen Zellen des Darms Pygo2 offensichtlich funktionell redundant ist, scheint es für die Ausbildung von intestinalen Tumoren, welche durch dereguliertes Wnt/β-catenin induziert werden, essentiell zu sein. Daher könnte Pygo2 ein idealer Angriffspunkt für die zielgerichtete Therapie von Darmtumoren mit β-catenin Mutation sein.

Le cancer colorectal est un problème de santé publique majeur pour lequel la recherche de nouveaux traitements est indispensable. Notre équipe a démontré l’efficacité d’une immunothérapie par un lipide A dans un modèle de cancer du colon chez le rat. Lorsque les rats sont porteurs de petites carcinomatoses, le lipide A induit la guérison de 95% des rats. L’étude des mécanismes d’action de cette immunothérapie nous a permis de montrer que l’effet antitumoral du lipide A est dépendante de la cytotoxicité induite par le granzyme B produit par les neutrophiles intratumoraux. En effet, nous avons montré que, dans le microenvironnement tumoral, les neutrophiles produisent du granzyme B et présentent un phénotype de type N2 protumorigène. Lorsque les rats sont traités par lipide A, il y a modification du phénotype des neutrophiles en type N1 antitumoral et libération du granzyme B qui induit l’apoptose des cellules tumorales. Lorsque les rats développent des tumeurs beaucoup plus volumineuses, l’efficacité du lipide A est diminuée et seul 40% des animaux sont guéris. L’injection préalable d’oxaliplatine permet alors de maintenir l’efficacité de l’immunothérapie par le lipide A. Nous avons montré que l’oxaliplatine induit la sénescence des cellules tumorales, générant ainsi un microenvironnement propice au recrutement au sein des tumeurs des neutrophiles, lesquels sont activables par l’immunothérapie subséquente. L’association de l’induction de la sénescence et de l’activation des cellules immunitaires par immunothérapie est une approche efficace et originale sur laquelle les recherches doivent se poursuivre. / Colorectal cancer is a major public health concern in France. Resistance to standard chemotherapy requires development of novel therapeutic approaches. In the past decades, our team showed the immunotherapeutic properties of lipid A in a model of colon cancer in rats. 95% of rats bearing small carcinomas were cured following treatment by lipid A. The study of mechanisms underlying this immunotherapy allowed us to show that the antitumor effect of lipid A was dependent on cytotoxicity induced by granzyme B produced by intratumoral neutrophils. Indeed, we have shown that, in the tumor microenvironment, neutrophils produced granzyme B and had a pro-tumorigenic N2 phenotype. When rats were treated with lipid A, neutrophils shifted to an antitumor N1 phenotype and released granzyme B, thus inducing apoptosis of tumor cells. In rats bearing advanced carcinoma, the effectiveness of lipid A was reduced and only 40% of animals were cured. An injection of oxaliplatin prior to lipid A treatment allowed sustaining the effectiveness of lipid A immunotherapy. In the present study, we showed that oxaliplatin injection induced tumor cell senescence. The microenvironment produced by senescent cells enabled then the recruitment of neutrophils within tumors, subsequently activated by lipid immunotherapy.Combining the induction of tumor cells senescence and activation of immune cells by an immunotherapeutic agent constitute an original and interesting therapeutic approach, but still studies must be carrying out to better understand underlying mechanisms.

A l`heure où le cancer a supplanté les maladies cardiovasculaires en tant que première cause de mortalité en France, le CCR représente la deuxième cause de mortalité par cancer. Longtemps dominé par la génétique, le paradigme du cancer colorectal a récemment évolué laissant une place prépondérante aux facteurs environnementaux. Il est néanmoins difficile d’étudier l’impact de l’environnement sur la carcinogénèse colorectale de façon exhaustive compte tenu de la multiplicité de ces facteurs environnementaux. Dans la présente étude, nous avons essayé d’appréhender la contribution de la composition du microbiote intestinal, de la composition métabolomique des eaux fécales et des altérations épigénétiques de l’hôte comme témoin de ces facteurs environnementaux au cours de la carcinogénèse colorectale et d’en évaluer le bénéfice en tant que marqueur diagnostique non invasif. Nous avons ainsi pu montrer au sein d’une population de patients à risque moyen de cancer colorectal qu’il existait une signature microbiologique, métabolomique et épigénétique spécifique du cancer colorectal. Nous avons également pu montrer que ces marqueurs présentaient des performances diagnostiques supérieures au test colorimétrique au guaiac utilisé dans le dépistage organisé du cancer colorectal. / Colorectal cancer (CRC) is a significant cause of morbidity and mortality in developed countries. The majority of CRC are called sporadic, meaning they are due to environmental factors rather than constitutional genetic alterations. Indeed, the role of environment, i.e. western lifestyle, is also underlined by dramatic geographic variations in CRC incidence in both sexes. However, it is difficult to take into account the totality of human environmental exposures for a better understanding of the colorectal cancer pathogenesis. In the present work, we tried to highlight the contribution of the environment in the development of colorectal cancer by studying the role of the intestinal microbiota together with the role of the fecal metabolites and the presence of epigenetic alterations of the host. We also investigated the performance accuracy of the latter changes for colorectal cancer diagnosis as compared to the guaiac fecal occult blood test which is widely used as a non-invasive test in several screening program. We demonstrated a specific signature associated with advanced colorectal neoplasia for the intestinal microbiota and the fecal metabolite profile for colorectal cancer as well as a link between colorectal cancer and Wif-1 gene methylation in urine and/or fecal samples. Those specific signatures disclosed higher diagnostic accuracy compared to guaiac fecal occult blood test as colorectal cancer screening test.

Colorectal cancer (CRC) is one of the most treatable cancers, with a 5-year survival rate of similar to 64%, yet over 50,000 deaths occur yearly in the United States. In 15% of cases, deficiency in mismatch repair leads to null mutations in transforming growth factor beta (TGF-beta) type II receptor, yet genotype alone is not responsible for tumorigenesis. Previous work in mice shows that disruptions in TGF-beta signaling combined with Helicobacter hepaticus cause tumorigenesis, indicating a synergistic effect between genotype and microbial environment. Here, we examine functional shifts in the gut microbiome in CRC using integrated - omics approaches to untangle the role of host genotype, inflammation, and microbial ecology. We profile the gut microbiome of 40 mice with/without deficiency in TGF-beta signaling from a Smad3 (mothers against decapentaplegic homolog-3) knockout and with/without inoculation with H. hepaticus. Clear functional differences in the microbiome tied to specific bacterial species emerge from four pathways related to human colon cancer: lipopolysaccharide (LPS) production, polyamine synthesis, butyrate metabolism, and oxidative phosphorylation (OXPHOS). Specifically, an increase in Mucispirillum schaedleri drives LPS production, which is associated with an inflammatory response. We observe a commensurate decrease in butyrate production from Lachnospiraceae bacterium A4, which could promote tumor formation. H. hepaticus causes an increase in OXPHOS that may increase DNA-damaging free radicals. Finally, multiple bacterial species increase polyamines that are associated with colon cancer, implicating not just diet but also the microbiome in polyamine levels. These insights into cross talk between the microbiome, host genotype, and inflammation could promote the development of diagnostics and therapies for CRC. IMPORTANCE Most research on the gut microbiome in colon cancer focuses on taxonomic changes at the genus level using 16S rRNA gene sequencing. Here, we develop a new methodology to integrate DNA and RNA data sets to examine functional shifts at the species level that are important to tumor development. We uncover several metabolic pathways in the microbiome that, when perturbed by host genetics and H. hepaticus inoculation, contribute to colon cancer. The work presented here lays a foundation for improved bioinformatics methodologies to closely examine the cross talk between specific organisms and the host, important for the development of diagnostics and pre/probiotic treatment.