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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
191

Deficient expression of DNA repair enzymes in early progression to sporadic colon cancer

Facista, Alexander, Nguyen, Huy, Lewis, Cristy, Prasad, Anil, Ramsey, Lois, Zaitlin, Beryl, Nfonsam, Valentine, Krouse, Robert, Bernstein, Harris, Payne, Claire, Stern, Stephen, Oatman, Nicole, Banerjee, Bhaskar, Bernstein, Carol January 2012 (has links)
BACKGROUND:Cancers often arise within an area of cells (e.g. an epithelial patch) that is predisposed to the development of cancer, i.e. a "field of cancerization" or "field defect." Sporadic colon cancer is characterized by an elevated mutation rate and genomic instability. If a field defect were deficient in DNA repair, DNA damages would tend to escape repair and give rise to carcinogenic mutations.PURPOSE:To determine whether reduced expression of DNA repair proteins Pms2, Ercc1 and Xpf (pairing partner of Ercc1) are early steps in progression to colon cancer.RESULTS:Tissue biopsies were taken during colonoscopies of 77 patients at 4 different risk levels for colon cancer, including 19 patients who had never had colonic neoplasia (who served as controls). In addition, 158 tissue samples were taken from tissues near or within colon cancers removed by resection and 16 tissue samples were taken near tubulovillous adenomas (TVAs) removed by resection. 568 triplicate tissue sections (a total of 1,704 tissue sections) from these tissue samples were evaluated by immunohistochemistry for 4 DNA repair proteins. Substantially reduced protein expression of Pms2, Ercc1 and Xpf occurred in field defects of up to 10 cm longitudinally distant from colon cancers or TVAs and within colon cancers. Expression of another DNA repair protein, Ku86, was infrequently reduced in these areas. When Pms2, Ercc1 or Xpf were reduced in protein expression, then either one or both of the other two proteins most often had reduced protein expression as well. The mean inner colon circumferences, from 32 resections, of the ascending, transverse and descending/sigmoid areas were measured as 6.6 cm, 5.8 cm and 6.3 cm, respectively. When combined with other measurements in the literature, this indicates the approximate mean number of colonic crypts in humans is 10 million.CONCLUSIONS:The substantial deficiencies in protein expression of DNA repair proteins Pms2, Ercc1 and Xpf in about 1 million crypts near cancers and TVAs suggests that the tumors arose in field defects that were deficient in DNA repair and that deficiencies in Pms2, Ercc1 and Xpf are early steps, often occurring together, in progression to colon cancer.
192

Doménová a strukturní charakterizace tyrozinových fosforylačních míst proteinů v nádorových buňkách / Domain and structural characterization of tyrosine phosphorylation sites in cancer cells

Vávra, Dan January 2014 (has links)
Phosphorylation is an important mechanism for regulation of protein function and aktivity. Tyrosine phosphorylation plays a critical role in signaling pathways. Aberrant tyrosine phosphorylation was observed in many cancer types. My work follows patological details of tyrosine phosphorylation sites of lung and colorectal cancers. Point of view includes aminoacid sequence, secondary structure, domain localization, expression, model organism ortholog occurrence. The project is based on analysis of literary informations and data from protein databases. There are no new phosphorylation sites in observed cancer types. Regular secondary structures, α-helices and β-sheets, are significantly phosphorylated in compare with loops. Annexin and Kinase domains are the most phosphorylated. Gene expression change of phosphorylated proteins occurs in observed cancer cells. Powered by TCPDF (www.tcpdf.org)
193

Molekulární mechanismy a geny podílející se na kontrole signální dráhy Wnt / Molecular mechanisms and components controlling the Wnt signaling pathway output

Krausová, Michaela January 2014 (has links)
Beyond its essential roles in embryonic development, the Wnt-mediated signal transduction cascade is critically implicated in homeostasis of adult tissues. In the gastrointestinal epithelium, the threshold of active Wnt signaling is kept in a physiological range by a spectrum of regulatory networks and loops, thereby balancing the opposing processes of cell fate determination, proliferation and stem cell self-renewal. Furthermore, compelling evidence undoubtedly link an aberrant Wnt activity to the onset of bowel cancer. Understanding the principle causes and effects secondary to excessive Wnt signaling can provide valuable insights into the pathology of the malignant transformation of the colorectum. The proposed thesis attempts to focus on novel modes of the Wnt pathway modulation; both general and context-specific nuances of the Wnt level adjustment are thereby delineated. The results are presented in three distinct research publications and one review article. The first study examines the contribution of the distinct post-translational modifications, which the Wnt proteins undergo, to their proper processing, secretion and signaling activity. First, we investigated the sequential order and mutual interdependence of cysteine and serine-linked fatty acylation and N-linked glycosylation of murine...
194

Zur Interaktion von Genotyp und Ernährung bei Darmkrebs

Behrends, Thomas 21 January 2013 (has links)
Ziel dieser Arbeit war es, sowohl die Auswirkungen einer veränderten Selenversorgung über die Nahrung als auch die Rolle des zentralen Transport- und Speicherproteins für Selen (Selenoprotein P, SepP) auf die intestinale Tumorigenese tierexperimentell zu untersuchen. Eine gestörte SepP-Expression, führte zur Ausbildung größerer Tumore. Durch eine Steigerung der Selenversorgung über die Nahrung eine signifikante Reduktion von Tumoranzahl und Gesamttumorfläche erzielt werden. Hierzu wurde den Tieren ab Tag 21 das Vierfache der empfohlenen Tagesdosis (RDA) für Selen verabreicht. Die Ergebnisse zeigten zudem, dass die Auswirkungen einer verminderten SepP-Expression durch eine nutritive Se-Supplementation kompensiert werden können. Der Verlust eines SepP-Allels war mit einer gesteigerten Infiltration von Mastzellen ins Tumorgewebe und höheren Il6-Spiegeln im Serum assoziiert. Auch waren die Tumore dieser Versuchsgruppen schlechter differenziert. Diese Resultate weisen auf eine modulatorische Wirkung von SepP auf die krebsbedingte Immunantwort hin und unterstreichen eine zentrale Rolle dieses Selenoproteins in Bezug auf anti-kanzerogene Wirkmechanismen von Selen. Die Ergebnisse dieser Arbeit zeigen somit erstmals die Abhängigkeit protektiver Selen-vermittelter Effekte von einer optimalen SepP-Expression und die präventiven Fähigkeiten einer gesteigerten Selenzufuhr zur Kompensation eines nachteiligen Genotyps. Somit können gerade Menschen, die z.B. aufgrund ihrer genetischen Prädisposition ein erhöhtes Darmkrebsrisiko aufweisen von einer gesteigerten präventiven Supplementation profitieren. Dennoch zeigen Vorarbeiten und die Ergebnisse zu den transgenen Versuchstieren, dass es gerade in Bezug auf eine therapeutische Anwendung unabdingbar ist, ein wachstumsförderndes Potential einer solchen Intervention nach erfolgter Tumorinitiation auszuschließen. Hierzu muss in weitergehenden Studien noch eine geeignete Strategie entwickelt und getestet werden. / The aim of this work was to evaluate to which extend the gene expression of the central transport and storage protein for selenium (Selenoprotein P, SepP) is required to mediate health promoting effects and if these effects can be modulated by selenium supplementation. SepP+/--mice were crossed with Apcmin/+-mice to elucidate the potential disadvantage of a decreased SepP-expression. A third mouse strain, expressing human SEPP in liver, was used to study the beneficial effects of additional circulating human SEPP. Two diets with different selenium content were used to obtain better insights into how SepP-expression influences intestinal tumorigenesis. The loss of one SepP-allele resulted in the development of larger tumors. Overall tumor-count and -area could be reduced by increasing nutritional selenium concentrations. Increased tumorigenesis could thus be compensated for raising nutritional Se concentrations. Interestingly, the additional expression of human SEPP did not elicit any cancer-preventive action. An increased number of mast cells was found in tumorous tissue of SepP+/--mice. This was accompanied by a lower differentiation state and higher Il6 concentrations in serum of heterozygous mice. The results indicate that the SepP genotype is modulating the immune response and highlight the central role of SepP in mediating the anti-cancerogenic effects of Se. We are the first to show that protective effects of Se are related to the expression of SepP and that the negative outcome of a reduced expression can be alleviated by raising nutritional Se supply. Individuals with a higher risk for colorectal cancer may thus benefit from supplementation strategies. Nevertheless the data obtained from transgenic mice and the results of previous studies indicate that therapeutic administration of Se should be handled with care. Especially the potential danger of supplemental Se promoting tumor growth in advanced stages should be addressed in further investigations.
195

A espiritualidade como estratégia de enfrentamento do paciente oncológico no percurso da enfermidade

Silva, Renata Rose Pachêco da 14 May 2009 (has links)
Made available in DSpace on 2016-04-28T20:40:03Z (GMT). No. of bitstreams: 1 Renata Rose Pacheco da Silva.pdf: 676026 bytes, checksum: d7b1bb1ce5fea713ba5e6d5cfe03d7de (MD5) Previous issue date: 2009-05-14 / The fundamental goal of this paper is to find resources of spiritual matter that, especially, strengthen and encourage women with either breast or colon cancer, transforming them into a coping strategy. This qualitative research approach, with a communicative nature was composed by a group of seven participants of the female gender. All of them were in the remissive phase of the treatment and belonged to the Grupo de Apoio Esperança (supporting group hope), which offers psychological support to CEOC (Centro de Oncologia de Caruaru - PE- Caruaru´s Cancer Treatment Center) patients who suffer from cancer. The data was collected by the interview technique, in 2008 November. Was used for analysys the method of data condensation based on the Kvale (1996) applications. It was observed that for patients that carry either breast or colon cancer the most commonly used coping strategy is the search for spirituality / Este estudo teve como objetivo fundamental conhecer os recursos de caráter espiritual que, fortalecem e encorajam mulheres com câncer de mama e cólon, transformando-se em estratégia de enfrentamento. Esta pesquisa, de abordagem qualitativa, de natureza participativa, utilizou-se de um grupo composto por sete participantes do sexo feminino. Todas se encontravam na fase de remissão do tratamento e pertenciam ao Grupo de Apoio Esperança, que oferece suporte psicológico a pacientes oncológicos do CEOC (Centro de Oncologia de Caruaru - PE). Os dados foram coletados por meio da técnica de entrevista, no mês de novembro de 2008. Para análise, empregou-se o método de condensação de dados baseado nos pressupostos de Kvale (1996). Observou-se que, para a paciente portadora de câncer de mama e cólon, a estratégia de enfrentamento mais utilizada é a busca da espiritualidade
196

Estudo da associação entre o gene KRAS e células tronco tumorais com características clínico-patológicas e sobrevida no câncer de cólon metastático / Association between KRAS gene and cancer stem cells with clinicopathologic features and survival in metastatic colon cancer

Ribeiro, Karen Bento 12 December 2013 (has links)
INTRODUÇÃO: Os múltiplos passos da carcinogênese do câncer de cólon envolvem a existência de subpopulações de células tronco tumorais (CSC), responsáveis pela transformação, crescimento e proliferação das células tumorais. As proteínas CD44 e CD166 são marcadores de CSC associados a sinalização celular, adesão, migração, metástase e resposta linfocitária. Alguns fatores podem modular a expressão CSC como a mutação KRAS. OBJETIVO: correlacionar a expressão dos marcadores CD44 e CD166 em carcinoma de cólon metastático e status do oncogene KRAS (selvagem/mutado) com as características clínico-patológicas e desfecho do paciente ao final do seguimento. MATERIAL E MÉTODOS: Foram coletadas 58 amostras de tecido tumoral de pacientes com neoplasia de cólon metastático, tratados com CapeOx no Serviço de Oncologia Clínica do HCFMRPUSP de 2003 a 2012. Foram coletadas informações do prontuário sobre status do gene KRAS, características clínico-patológicas e desfecho clínico, sendo também realizada imunohistoquímica para marcação CD44 e CD166 através da técnica de TMA. Utilizado software SPSS 17 para análise estatística e considerado valor de p<0,050 para significância dos dados. RESULTADOS: A expressão de CD44 e CD166 foi positiva em 41,4% e 43%, respectivamente, e o status KRAS mutado em 48,3%. No subgrupo kAs selvagem e nos idosos (>65 anos), houve associação entre CD44 e CD166, p=0,042 e p=0,001, respectivamente. Pacientes CD166 negativo tiveram 3 vezes mais chances de progressão de doença (p=0,02) do que CD166 positivo. Pacientes Kras mutado e CD166 negativo tiveram 8 vezes risco de progressão (p<0,01). Pacientes CD44 positivo tiveram 4 e 5 vezes mais chances de evoluir com metástases hepática e pulmonar (p<0,01) em relação aos CD44 negativo. Pacientes com a combinação KRAS mutado e CD44 positivo tiveram 7 vezes mais chance de evoluir com metástase pulmonar (p=0,02) em relação a pacientes KRAS selvagem e CD44 negativo. DISCUSSÃO: Na amostra estudada observamos a influência das expressões dos marcadores de CSC e suas combinações com o status de mutação do gene KRAS, de modo que pacientes com CD166 negativo no tumor primário apresentam um desfecho de maior recorrência e o CD44 positivo favorece a evolução para metástases pulmonar e hepática. A mutação do gene KRAS atua modulando a via do EGF influenciando o comportamento biologico do tumor e os desfechos (recidiva e metastases) diretamente relacionados com a expressão dos marcadores de CSC no cancer de colon metastatico. CONCLUSÃO: Este estudo demonstrou interação entre a expressão imuno-histoquímica dos marcadores CSC de cólon (CD166 e CD44) e o status KRAS, podendo carcterizar subgrupos de pacientes com maiores chances de evolução desfavorável e assim propor um modelo de tratamento e seguimento mais individualizado. / BACKGROUND: Colon cancer carcinogenesis has been recently correlated with specific cancer stem cell (CSC) subpopulations which are associated with transformation, growth and spread process of tumor cells. CD44 and CD166 are CSC markers correlated with cell signalization, adhesion, migration, metastasis, and lymphocyte response. Some factors as KRAS mutation could modulate CSC. OBJECTIVE: Analyze CD44 and CD166 expressions in metastatic colon carcinoma and its correlation with KRAS status, clinicopathological features, disease recurrence and patient survival. MATERIAL AND METHODS: Tissues were obtained from 58 patients with confirmed metastatic colon cancer, treated with CapeOx at FMRP-USP from 2003 to 2012. Clinical and outcomes informations and KRAS gene status were obtained from medical records. KRAS status was analyzed with RT-PCR. CD44 and CD166 were analyzed with TMA immunohistochemistry. Statistical analyses were performed using SPSS 17.0. A p-value <0,050 was considered to be statistically significant. RESULTS: CD44 and CD166 expressions were positive in 41,4% and 43%, respectively, and KRAS status was mutate in 48,3%. Wild-type KRAS in elderly patients had statistical association between CD44 and CD166, p=0,042 and p=0,001, respectively. Patients with CD166 negative had 3 fold increase in progression disease (p<0,01). Patients with CD44 positive had 4 and 5 fold increase in liver and lung metastasis (p<0,01), respectively. Patients with combined mutated KRAS and CD44 positive had 7 fold increase in lung metastasis (p=0,02) compared with wildtype KRAS and CD44 negative. DISCUSSION: In this study, the influence of markers expression of colon CSC (CD44 and CD166) and its combinations with status KRAS were proven. Patients with CD166 negative in primary colon tumor are more likely to present higher recurrence and, CD44 positive have a higher chance to develop lung and liver metastasis. KRAS mutation contributed, associated with studied CSC expressions, to cancer biological behavior and agressivness. CONCLUSIONS: This study demonstrated interaction between imunohistochemical expression of colonic CSC markers (CD166 and CD44) and KRAS gene status. Subgroups of patients with worse outcomes could be identified and this biological information contributed to personalized treatments and follow ups that should be proposed for these patients.
197

Mutated in colorectal cancer (MCC): a putative tumour suppressor gene in colorectal cancer

Sigglekow, Nicholas David, Garvan Institute of Medical Research, Faculty of Medicine, UNSW January 2009 (has links)
Colorectal cancer (CRC) remains a significant burden in contemporary society due to an aging population, unhealthy dietary choices and an increasingly sedentary lifestyle. While the underlying defects for many hereditary forms of CRC have been determined, many genetic and epigenetic changes promoting common sporadic CRCs have yet to be identified. The Mutated in Colorectal Cancer (MCC) gene, identified in 1991, was initially thought to be responsible for the hereditary form of CRC, familial adenomatous polyposis, before the discovery of the susceptibility gene Adenomatous Polyposis Coli (APC), which then became the focus of intense research. Recent data, however, suggests that MCC may also be important in the development of CRC. I have investigated the mechanism of MCC gene silencing, the putative structure, and multiple functions of MCC. MCC was frequently silenced by promoter hypermethylation in CRC cell lines and primary tumours. MCC methylation showed strong molecular and clinicopathological associations with hallmarks of the serrated neoplasia pathway. Furthermore, MCC methylation was more frequent in serrated precursor lesions compared with adenomas, thus occurring early during carcinogenesis. MCC is highly conserved in complex multicellular organisms. Re-introduction of MCC in CRC cell lines resulted in partial G1 to S phase, and G2/M phase cell cycle blocks, potentially by upregulating cell cycle inhibitor gene transcription and interfering with the process of mitotic checkpoints and division, respectively. Changes in MCC levels also modulated NF?B pathway signalling, the pathway required for maintaining cell viability and proliferation in colonic epithelial cells. In particular, MCC overexpression suppressed both TNF? and LPS-induced NF?B activation, decreasing both the magnitude and rate of cellular responses. Overexpression also resulted in downregulation of proteins involved in canonical NF?B pathway signalling, while increasing the transcription of non-canonical NF?B genes. Therefore, MCC may direct activation of this pathway to a specific subset of NF?B-regulated genes. These data provide a molecular basis for the role of MCC as a tumour suppressor gene in CRC. MCC may have multiple functions, regulating cell cycle progression and modulating NF?B pathway signalling, either through direct involvement in pathway signalling cascades, or by providing a scaffold on which signalling events can occur.
198

Testing for spatial correlation and semiparametric spatial modeling of binary outcomes with application to aberrant crypt foci in colon carcinogenesis experiments

Apanasovich, Tatiyana Vladimirovna 01 November 2005 (has links)
In an experiment to understand colon carcinogenesis, all animals were exposed to a carcinogen while half the animals were also exposed to radiation. Spatially, we measured the existence of aberrant crypt foci (ACF), namely morphologically changed colonic crypts that are known to be precursors of colon cancer development. The biological question of interest is whether the locations of these ACFs are spatially correlated: if so, this indicates that damage to the colon due to carcinogens and radiation is localized. Statistically, the data take the form of binary outcomes (corresponding to the existence of an ACF) on a regular grid. We develop score??type methods based upon the Matern and conditionally autoregression (CAR) correlation models to test for the spatial correlation in such data, while allowing for nonstationarity. Because of a technical peculiarity of the score??type test, we also develop robust versions of the method. The methods are compared to a generalization of Moran??s test for continuous outcomes, and are shown via simulation to have the potential for increased power. When applied to our data, the methods indicate the existence of spatial correlation, and hence indicate localization of damage. Assuming that there are correlations in the locations of the ACF, the questions are how great are these correlations, and whether the correlation structures di?er when an animal is exposed to radiation. To understand the extent of the correlation, we cast the problem as a spatial binary regression, where binary responses arise from an underlying Gaussian latent process. We model these marginal probabilities of ACF semiparametrically, using ?xed-knot penalized regression splines and single-index models. We ?t the models using pairwise pseudolikelihood methods. Assuming that the underlying latent process is strongly mixing, known to be the case for many Gaussian processes, we prove asymptotic normality of the methods. The penalized regression splines have penalty parameters that must converge to zero asymptotically: we derive rates for these parameters that do and do not lead to an asymptotic bias, and we derive the optimal rate of convergence for them. Finally, we apply the methods to the data from our experiment.
199

Effects of dietary fat and fiber on the oxidative status of the small intestine and colon of rats

Sanders, Lisa Merle 16 August 2006 (has links)
Colon cancer is one of the most commonly diagnosed cancers in the US, yet small intestine cancer is a rare event. While there are many similarities between these two tissues, inherent differences such as redox status, may contribute to the variation in cancer occurrence. We examined the difference in reactive oxygen species (ROS) generation, antioxidant enzyme activity and oxidative DNA damage in the small and large intestine of rats under normal conditions and following exposure to exogenous oxidative stress. Basal ROS and antioxidant enzyme activities were greater in the colon than the small intestine, and the balance of ROS to antioxidant enzymes in the colon was more pro-oxidant than in the small intestine. During oxidative stress, ROS and oxidative DNA damage were greater in the colon than the small intestine. Thus the colon responds to oxidative stress less effectively than the small intestine, possibly contributing to increased cancer incidence at this site. We next wanted to understand how diets containing a combination of fish or corn oil and pectin or cellulose may alter the redox environment of the colon. ROS, oxidative DNA damage, antioxidant enzyme activity and apoptosis were measured in colonocytes of rats fed one of four diets containing either corn oil or fish oil and cellulose or pectin. Measurements were madein rats untreated with carcinogen and rats exposed to a chemical carcinogen and radiation. In rats not treated with a carcinogen, fish oil enhanced ROS, and fish oil/pectin suppressed antioxidant enzymes as compared to corn oil/cellulose. Oxidative DNA damage was inversely related to ROS in the fish oil/pectin diet and apoptosis was enhanced relative to other diets. In carcinogen treated and irradiated rats, a similar protective effect was seen with fish oil/pectin as evidenced by a reduction in oxidative DNA damage and enhancement of apoptosis. This suggests that a diet containing fish oil/pectin may protect against colon carcinogenesis by modulation of the redox environment to promote apoptosis and minimize oxidative DNA damage.
200

LNA-clamp-PCR zum sensitiven Nachweis von Punktmutationen im Rahmen der Entwicklung eines Darmkrebsfrüherkennungstests / LNA-clamp-PCR as a method for sensitive detection of point mutations as part of the development of an assay for the early diagnosis of colon cancer

Schatz, Daniela January 2011 (has links)
Darmkrebs ist die zweithäufigste malignombedingte Todesursache in den westlichen Industrieländern. Durch eine frühzeitige Diagnose besteht jedoch eine hohe Chance auf Heilung. Der Goldstandard zur Darmkrebsfrüherkennung ist gegenwärtig die Koloskopie. Eine Darmspiegelung ist jedoch invasiv und mit Unannehmlichkeiten für den Patienten verbunden. Die Akzeptanz in der Bevölkerung ist daher gering. Ziel des BMBF- Projektes „Entwicklung eines nichtinvasiven Nachweissystems zur Früherkennung von humanem Darmkrebs“, in dessen Rahmen diese Arbeit entstand, ist die Bereitstellung eines nichtinvasiven Nachweisverfahrens zur Darmkrebsfrüherkennung. Der Nachweis soll über die Detektion von aus neoplastischen Zellen stammender DNA in Stuhl erfolgen. Die Entartung dieser Zellen beruht auf Veränderungen im Erbgut, welches unter anderem Mutationen sind. Im ersten Teil des BMBF-Projektes wurde ein Set von Mutationen zusammengestellt, welches eine hohe Sensitivität für Vorstufen von Darmkrebs aufweist. Ziel dieser Arbeit war es, eine Nachweismethode für die zuvor identifizierten Punktmutationen zu entwickeln. Das Nachweisverfahren musste dabei unempfindlich gegen einen hohen Hintergrund nichtmutierter DNA sein, da im Stuhl geringe Mengen DNA aus neoplastischen Zellen bei einem hohen Hintergrund von DNA aus gesunden Zellen vorliegen. Hierzu wurden Plasmidmodellsysteme für die aus dem Marker-Set stammenden Genfragmente BRAF und dessen Mutante V600E, CTNNB1 und T41I, T41A, S45P und K-ras G12C hergestellt. Mit Hilfe dieser Plasmidmodellsysteme wurde dann das Nachweissystem entwickelt. Der entscheidende Schritt für die Detektion von Punktmutationen bei hohem Wildtypüberschuss ist eine vorhergehende Anreicherung. In der vorliegenden Arbeit wurde dazu die Methode der LNA-clamp-PCR (locked nucleic acid) etabliert. Die Bewertung der erzielten Anreicherung erfolgte über das relative Detektionslimit. Zur Bestimmung des Detektionslimits wurde die Schmelzkurvenanalyse von Hybridisierungssonden eingesetzt; diese wurde im Rahmen dieser Arbeit für die drei oben genannten Genfragmente und ihre Mutanten entwickelt. Die LNA-clamp-PCR wird in Anwesenheit eines LNA-Blockers durchgeführt. Das Nukleotidanalogon LNA weist im Vergleich zu DNA eine erhöhte Affinität zu komplementären DNA-Strängen auf. Gleichzeitig kommt es bei Anwesenheit einer Basenfehlpaarung zu einer größeren Destabilisierung der Bindung. Als Blocker werden kurze LNA-DNA-Hybridoligonukleotide eingesetzt, die den mutierten Sequenzbereich überspannen und selbst der Wildtypsequenz entsprechen. Durch Bindung an die Wildtypsequenz wird deren Amplifikation während der PCR verhindert (clamp = arretieren, festklemmen). Der Blocker selbst wird dabei nicht verlängert. Der Blocker bindet unter optimalen Bedingungen jedoch nicht an die mutierte Sequenz. Die Mutante wird daher ungehindert amplifiziert und somit gegenüber dem Wildtyp-Fragment angereichert. Die Position des Blockers kann im Bindungsbereich eines der Primer sein und hier dessen Hybridisierung an dem Wildtyp-Fragment verhindern oder zwischen den beiden Primern liegen und so die Synthese durch die Polymerase inhibieren. Die Anwendbarkeit beider Systeme wurde in dieser Arbeit gezeigt. Die LNA-clamp-PCR mit Primerblocker wurde für BRAF etabliert. Es wurde ein Detektionslimit von mindestens 1:100 erzielt. Die LNA-clamp-PCR mit Amplifikationsblocker wurde erfolgreich für BRAF, K-ras und CTNNB1: T41I, T41A mit einem Detektionslimit von 1:1000 bis 1:10 000 entwickelt. In Stuhlproben liegt DNA aus neoplastischen Zellen nach Literaturangaben zu einem Anteil von 1% bis 0,1% vor. Die LNA-clamp-PCR weist also mit Amplifikationsblockern ein ausreichend hohes Detektionslimit für die Analyse von Stuhlproben auf. Durch die erfolgreiche Etablierung der Methode auf drei verschiedenen Genfragmenten und vier unterschiedlichen Punktmutationen konnte deren universelle Einsetzbarkeit gezeigt werden. Für die Ausweitung der LNA-clamp-PCR auf die übrigen Mutationen des Marker-Sets wurden Richtlinien ausgearbeitet und die Blockereffizienz als Kennzahl eingeführt. Die LNA-clamp-PCR ist ein schnelles, kostengünstiges Verfahren, welches einen geringen Arbeitsaufwand erfordert und wenig fehleranfällig ist. Sie ist somit ein geeignetes Anreicherungsverfahren für Punktmutationen in einem diagnostischen System zur Darmkrebsfrüherkennung. Darüber hinaus kann die LNA-clamp-PCR auch in anderen Bereichen, in denen die Detektion von Punktmutationen in einem hohen Wildtyphintergrund erforderlich ist, eingesetzt werden. / Colon cancer is the second leading cause of cancer related deaths in the western world. However if diagnosed early there is a great chance curing the disease. Coloscopy is the gold standard for early detection of colorectal cancer today. Its greatest disadvantage is the fact that it is an invasive technique and provides some discomfort for the patients. Therefore, the compliance to undergo such a procedure is extremely low. This work was generated in the context of the BMBF-project „Development of a non-invasive assay for the early detection of preneoplastic and neoplastic lesions in the human colon“. The aim of the work described here is the development of a non-invasive assay for the early detection of colon cancer. The assay should detect DNA from neoplastic cells in feces samples. The transformation of these cells is based on alterations in the genome predominantly mutations. In the first part of the BMBF-project a mutation panel with high sensitivity for preneoplastic lesions of colon cancer was determined. The aim of this work was to develop a detection method for the point mutations of the determined mutation panel. The rare mutant DNA needs to be detected in the presence of a great amount of wild-type DNA shed from healthy tissue. The assay system needs to be insensitive to this high background of healthy DNA. Therefore a model system of plasmid DNA containing gene fragments of BRAF and its mutation V600E, CTNNB1 and T41I, T41A, S45P and K-ras G12C obtained from the marker panel was established. Using these plasmid system the detection method was developed. The most critical parameter for the detection of rare point mutations is an enrichment of these rare DNA molecules. In this work LNA-clamp-PCR (locked nucleic acid) technology was used to enrich the mutant DNA.. For the estimation of the achieved enrichment the relative detection limit was used. The detection limit was determined by melting curve analysis of hybridization probes. These assays were established in the present work for the three above mentioned gene fragments. LNA-clamp-PCR is performed in the presence of an LNA blocker. LNA is a synthetic DNA analog. LNA nucleotide analog bind to complementary DNA strands with higher affinity. In addition a single mismatch in the LNA-DNA duplex causes a much greater destabilization compared to a DNA-DNA duplex. Short LNA-DNA-hybrids were used as clamp, which cover the mutated region and represent the wild-type sequence. Within an appropriate temperature range, LNA can specifically bind to wild type template and can inhibit its amplification. The clamp itself will not be elongated. Under optimal conditions the LNA clamp will not interfere with the amplification of the mismatched template. Therefore the mutated gene fragment will be enriched in comparison to the wild-type. The position of the LNA clamp can either be at the primer binding site inhibiting primer hybridization on the wild-type fragment or the LNA clamp is positioned between the two primer binding sites inhibiting chain elongation of the perfectly matched template. In the present work both systems were applied. For the gene fragment BRAF the LNA was used at the primer binding site. The achieved detection limit was at least 1:100. The LNA-clamp-PCR with LNA inhibiting the chain elongation were developed successfully for BRAF, K-ras and CTNNB1: T41I, T41A achieving a detection limit of 1:1000 to 1:10 000. According to the literature 1% to 0.1% of the DNA in feces derives from neoplastic cells. Therefore the detection limit achieved by LNA-clamp-PCR with LNA inhibiting chain elongation would be sufficient for analyzing feces samples. LNA-clamp-PCR protocols were established for three different gene fragments and four diverse point mutations indicating that the technology can generally be used for high sensitive detection of DNA mutations. For the development of LNA-clamp-PCR protocols for the other mutations of the marker panel development guidelines were established. Clamp efficiency was identified as a quantitative parameter for protocol optimization. The LNA-clamp-PCR is a robust, fast and cost-saving technique which needs low labor input. Therefore the method is adequate for enriching point mutated gene fragments in a diagnostic assay for the detection of early colon cancer stages. In addition LNA-clamp-PCR can be applied in other fields where rare sequence variations need to be detected in the presence of high wild-type DNA background.

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