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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
171

L’acquisition du genre grammatical, en français langue maternelle et langue seconde chez des enfants de 5 à 11 ans : perspectives développementale et computationnelle. / The acquisition of french grammatical gender in first ant second language for children aged from 5 to 11 : didactic and computational applications

Marchal, Harmony 27 January 2011 (has links)
Cette recherche porte sur l’acquisition du genre grammatical français langue maternelle et langue seconde. Dans une perspective développementale, nous cherchons à décrire la manière dont de jeunes enfants, scolarisés en France et au Luxembourg, déterminent le genre des noms en se fondant sur les indices infra-lexicaux portés par les noms. Notre préoccupation consiste à examiner le type de connaissances acquises et les mécanismes sous-jacents à cette acquisition en langue maternelle, mais aussi lors de l’apprentissage du français langue seconde au niveau de l’école primaire au Luxembourg. Nous faisons l’hypothèse que l’extraction des connaissances de genre n’est pas fondée uniquement sur la valeur prédictive des terminaisons mais que les informations morphologiques portées par certaines terminaisons, les suffixes, interviennent aussi dans le processus d’acquisition du genre. En effet, la diversité d’informations portées par cette unité (sémantiques, lexicales et de genre) peut rendre cette unité plus « saillante » parmi l’ensemble des régularités pouvant être extraites. Trois expériences ont permis de mettre en évidence que la détermination du genre fondée sur les indices formels dépend effectivement d’autres facteurs, tels que la nature des terminaisons. Par ailleurs, une série de simulations informatiques a été conduite apportant des données complémentaires aux résultats expérimentaux. L’ensemble de ces données apportent des informations utiles pour l’apprentissage et l’enseignement précoce du française langue seconde au niveau de l’école primaire. / This research concerns the acquisition of the French grammatical gender in first and second language. From a developmental perspective, we tempt to describe the way of young children being sent to school in France and Luxembourg determine the gender of names, by using the infra-lexical cues carried by these. Our concern consists in examining the kind of knowledge acquired and the mechanisms underlying this acquisition for the mother tongue and also during the learning of French as a second language at the primary school in Luxembourg. We hypothesize that the extraction of gender knowledge is not only dependent on the predictive value of endings but that morphological information carried by certain endings, suffixes, also intervenes in the process of gender acquisition. Indeed, the range of information carried by this unit (semantic, lexical and of gender) can make this unit more "striking" among all the regularities being able to be extracted. Three experiments allowed to bring to light that the determination of gender based on formal cues depends effectively on other factors, such as the nature of endings. Besides, a series of computational simulations was driven, bringing additional data to the experimental results. All these data brings useful information to the learning and the early teaching of French as a second language at the primary school.
172

Tratamento de águas residuárias utilizando emissários submarinos: avaliação do nível de tratamento para uma disposição oceânica ambientalmente segura. / Wastewater treatment using submarine outfalls: evaluation on the treatmente level for environmentally safe ocean disposal.

Eduardo Lucas Subtil 23 May 2012 (has links)
Tendo em vista as questões ambientais relacionadas com a disposição oceânica de esgotos sanitários, muito tem sido debatido sobre qual nível de tratamento deve ser adotado ou quais constituintes presentes nos esgotos devem ser removidos antes do lançamento em regiões costeiras. Dentro deste contexto, este estudo teve como objetivo principal fornecer subsídios para uma tomada de decisão quanto à necessidade de remoção de nutrientes para lançamento de esgotos sanitários por meio de emissários submarinos, de maneira a garantir um nível de tratamento mínimo sem que haja um comprometimento do corpo receptor em termos de potencial de eutrofização. Para isso, foram utilizados dois sistemas de disposição oceânica de esgotos sanitários: Santos/São Vicente e Praia Grande 2. O impacto ambiental do lançamento de esgotos pelos emissários submarinos foi avaliado por um modelo numérico de eutrofização, sendo as características da pluma de esgoto no campo próximo determinada pelo software CORMIX e acoplado no modelo de campo distante. A necessidade de remoção de nitrogênio e fósforo foi estimada com base na metodologia do Plano Oceânico da Califórnia. Os resultados demonstraram que tanto para o caso do emissário submarino de Santos quanto para o de Praia Grande haveria necessidade de remover amônia e fosfato para atender a legislação CONAMA 357/2005 quando operados com vazões de 3,0 e 5,3 m³.s-¹. Além disso, quando os sistemas foram operados sem tratamento ocorreu um aumento significativo na concentração de clorofila-a, atingindo valores de até 16 µg chl-a/L 12 µg chl-a/L na baía de Santos e Praia Grande, respectivamente. Os resultados demonstraram também que a utilização de um tratamento secundário com oxidação parcial da amônia promoveria uma redução de apenas 30% na concentração de clorofila-a, enquanto que a utilização de um TPQA com remoção de fosfato promoveria uma resposta ambiental melhor, levando a uma redução de até 71% na concentração de clorofila-a, resultados semelhantes ao tratamento terciário com remoção de nitrogênio e fósforo, resultados semelhantes aos obtidos quando foi considerado o tratamento terciário com remoção de nitrogênio e fósforo. / Due to environmental issues related to wastewater ocean discharge, much has been debated about the level of treatment that should be adopted or which constituents must be removed from wastewater before its final disposal in coastal zones. Within this context, this study aimed to provide support for a decision making on the need of wastewater nutrient removal before its final disposal through submarine outfalls in order to ensure an adequate treatment level, minimizing the environmental impact on the receiving body in terms of eutrophication potential. For this purpose, two wastewater ocean disposal systems: Santos/San Viciente and Praia Grande 2, were evaluated. The environmental impact of wastewater discharge through submarine outfalls was evaluated by a 2D eutrophication numerical model. Wastewater mixing conditions in the near field plume was evaluated using the software CORMIX, and the results were coupled to a far-field model. Nitrogen and phosphorus removals were evaluated through the California Ocean Plan methodology. The results showed that the removal of ammonia and phosphate is required for both submarine outfalls, Santos and Praia Grande, to meet the Brazilian legislation(CONAMA357/2005) when they are operated with flow rates of 3.0 and5.3m³.s-¹. Furthermore, when the systems are operated without treatment, modeled chlorophyll-a concentrations increased up to 16 µg chl-a/L and 12 µg chl-a/L in Santos bay and Praia Grande, respectively. The results also demonstrate that the use of a secondary treatment with partial ammonia oxidation promote a reduction of only 30% in the chlorophyll-a, while the use of a CEPT with phosphate removal promote a better environmental response, resulting a chlorophyll-a concentration reduction of 71%, similar results were obtained when tertiary treatment was considered for nitrogen and phosphorus removals.
173

Uma análise comparativa entre a simulação do modelo clássico de capacitores de potência e capacitores de potência reais testados em um ambiente laboratorial controlado / An analysis by comparing the classical power capacitors model simulated with the real power capacitors testes in a controlled laboratory environment

Alexandre Moriel da Silva 01 July 2013 (has links)
Esta pesquisa tem como principal objetivo apresentar uma análise do comportamento dos elementos passivos mais utilizados para compensação reativa e na composição dos filtros passivos sintonizados: os capacitores de potência. Tal análise foi focada na comparação de resultados obtidos via simulação computacional com os resultados oriundos de ensaios laboratoriais em ambiente controlado, servindo de base para estabelecer os limites de validade do modelo computacional hoje implementado em softwares comerciais de simulação de fluxo de carga e fluxo de harmônicos de uso bastante difundido no ambiente industrial. Os resultados alcançados demonstram que o modelo clássico de capacitores apresenta uma excelente precisão quando operando em condições ideais. Porém, quando operando na presença de situações adversas às ideais, o modelo demonstrou possuir limitações que serão devidamente reportadas neste documento. / This research has as aim to present a behaviors analysis of the electrical power capacitors which are used for reactive compensation and in the tuned harmonic passive filters. Such analysis was focused on the results comparison obtained via computer simulation with the results obtained in laboratory tests done in a controlled environment, providing the basis to establish the validity limits of the computational model implemented in today\'s commercial load flow and harmonic flow software simulation widespread use in industrial environments. Results show that the classical model capacitor has excellent accuracy when operating under ideal conditions. However, when operating in presence of adverse situations the classical model has demonstrated limitations that will be duly and reported in this work.
174

Modelo de otimização de demanda em infra-estrutura aeronáutica. / Demand optimization model in aeronautical infrastructure.

Jamil Kalil Naufal Júnior 08 July 2005 (has links)
Existe atualmente na sociedade um grande número de sistemas reais de alta complexidade. Esta complexidade pode ser definida tanto do ponto de vista da dificuldade em identificar todas as partes que compõem estes sistemas, como também, pela compreensão e definição real da relação entre estas partes, permitindo, desta forma uma representação adequada do comportamento global do sistema. O comportamento global destes sistemas não se caracteriza pela soma do comportamento de suas partes componentes. Normalmente, a modelagem destes sistemas não reflete, de forma realística, o seu comportamento, devido ao excesso de simplificações realizadas. Por outro lado, alguns modelos são impraticáveis de serem aplicados, devido ao excessivo esforço computacional e a restrições de tempo. O presente trabalho de pesquisa apresenta uma proposta de um modelo de otimização para um problema real de alta complexidade e com fortes requisitos de segurança (safety) encontrado na Infra-estrutura Aeronáutica Brasileira e Mundial. Este problema está relacionado ao desbalanceamento entre a capacidade e demanda em infra-estrutura aeronáutica em sistemas de transporte aéreo. Para tanto, o trabalho propõe um Modelo de Otimização de Demanda (MOD) em infra-estrutura aeronáutica, através da técnica de Inteligência Artificial denominada de Algoritmos Genéticos. A pesquisa analisa a eficiência do modelo proposto em termos da resolução do problema, bem como quanto à qualidade das respostas apresentadas. De forma complementar é avaliada a importância de cada um dos parâmetros do modelo de otimização através da sua flexibilização. / Nowadays, in the society, there are a great number of real systems with high complexity. This complexity can be justified in function of the difficulty in identifying all parts that compose these systems, but also the complex relationship between them. The global behavior of these systems is not characterized for the addition of the behavior of its contracting parties. Normally, the modeling of these systems does not reflect its realistic behavior, due the excess of simplifications carried out. On the other hand, some models are impracticable to be solved, because the extreme computational effort necessary. The present research develops a proposal of an optimization model for a real problem of high complexity and with hard safety requirements found in the Brazilian and world-wide aeronautical infrastructure. This problem deals with the unbalancing between the capacity and demand in infrastructure aeronautics in air transportation systems. The work considers a Demand Optimization Model (DOM) for aeronautical infrastructure through the technique of artificial intelligence denominated Genetic Algorithms. The research analyzes the efficiency of the considered model in terms of problem resolution, as well as, the quality of the presented answers. Of complementary form, some parameters of the model were adjusted and their importance were avaluated.
175

Técnica de reconstrução geométrica da superfície do corpo humano baseada em múltiplos sensores de profundidade para aplicação em teleconferência imersiva. / Geometry reconstruction technique of human body surface based on multiple depth sensors for immersive teleconferencing system.

Daniel de Andrade Lemeszenski 05 April 2013 (has links)
O interesse no uso de técnicas de aquisição de dados 3D em vídeos interativos e sistemas de videoconferência imersiva aumentou significativamente nos últimos anos. A disponibilidade de sensores de profundidade baseados em luz estruturada no varejo apresenta uma série de novas oportunidades em sistemas de teleconferência, entretenimento e e-learning. No entanto, problemas de oclusão frequentemente ocorrem quando é utilizado um único sensor ou técnicas de reconstrução 2,5D. Outras técnicas de interação e aplicações de teleconferências podem exigir uma reconstrução mais completa do usuário. Uma possível solução para isso implica na utilização de múltiplos dispositivos simultaneamente, o que traz novos desafios relacionados ao processo de calibração de câmaras e a aferição do aumento da superfície capturada quando é adicionado um novo sensor. Neste trabalho é apresentada a proposta VMD (Video-avatar from Multiple Depth maps), uma arquitetura de sistema que trata esses dois problemas. Com a finalidade de validar a viabilidade dessa proposta, três experimentos foram feitos resultando em uma análise qualitativa e quantitativa a fim de encontrar uma configuração adequada de múltiplos sensores de profundidade. / The interest in the use of 3D data acquisition techniques in video based interaction and immersive videoconferencing systems has noticeably increased in recent years. The availability of structured light 3D sensors as off-the-shelf hardware presents a series of new opportunities in teleconferences, entertainment and e-learning. However, occlusion issues often occur when it is used a single sensor or 2,5D reconstruction techniques. Other interaction techniques and teleconferencing applications may require a more complete reconstruction of the user. One possible solution to this involves the use of multiple devices simultaneously, which may bring new challenges related to the calibration process of cameras and measurement of the increase in covered area when it is added a new sensor. In this work we present VMD (Video-avatar from Multiple Depth maps), a system architecture that addresses this two issues. In order to validate the feasibility of this proposal, three experiments were performed resulting in a qualitative and quantitative analysis with the purpose of finding a suitable setup with multiple depth sensors.
176

Investigação numérica de escoamento e ruído gerado em corpos rombudos prismáticos. / Numerical investigation of flow and noise generated by prismatic bluff bodies.

Orselli, Reinaldo Marcondes 01 June 2012 (has links)
Muitos componentes de máquinas, equipamentos e meios de transporte podem ser representados na forma de corpos rombudos cujos deslocamentos em meio fluido podem gerar ruído. Nesse contexto, a tese tem como proposta o estudo da previsão numérica do ruído gerado oriundo do escoamento em torno de corpos rombudos. Como exemplo representativo de um corpo rombudo, o som gerado do escoamento ao redor de um cilindro é estudado. O escoamento em torno de um cilindro é considerado com esteira tridimensional e turbulenta na condição do regime subcrítico, que é caracterizado pela separação da camada limite no regime laminar. O escoamento em torno de um cilindro é obtido através da simulação numérica não-estacionária considerando domínio computacional tridimensional. Para lidar com a turbulência e a tridimensionalidade, o escoamento é resolvido utilizando a metodologia de simulação de grandes escalas (LES). O domínio computacional é discretizado pelo método de volumes finitos. O ruído é calculado separadamente utilizando a analogia de Ffwocs Williams & Hawkings (FW-H), cuja equação de onda tem como termo fonte a solução do escoamento fornecida pela simulação numérica. Na analogia de FW-H, a flutuação de pressão acústica é obtida no campo afastado assumindo um meio quiescente entre a região das fontes sonoras (campo próximo) e o local considerado para o cálculo do ruído. Devido ao alto custo computacional da simulação tridimensional (3D), as simulações numéricas foram realizadas com comprimento de envergadura do cilindro limitado, possibilitando considerar parte dos efeitos tridimensionais da esteira. No cálculo final do ruído, os métodos de correção acústica de Kato et al. (1993) e Seo & Moon (2007) são empregados de forma a equiparar a geração sonora obtida com cilindro de menor comprimento de envergadura ao respectivo ruído obtido experimentalmente com cilindro de maior comprimento. Esta tese contribuiu com uma investigação numérica da metodologia de cálculo de ruído utilizando a analogia de Ffwocs Williams & Hawkings para um escoamento tridimensional em torno de um cilindro considerando número de Reynolds elevado de Re = 90.000 e Re = 22.000. Os resultados mostram que a metodologia é capaz de prever o som no campo afastado nos casos simulados, visto que os espectros sonoros obtidos concordam com os respectivos dados experimentais. Além disso, os métodos de correção acústica de Kato et al. (1993) e Seo & Moon (2007) mostraram ser adequados para o cálculo do ruído adicional, que considera um cilindro de comprimento maior, porém são dependentes da correta estimativa do comprimento de coerência do escoamento ao longo da envergadura do cilindro. Por fim, o espectro sonoro obtido no campo afastado é função do resultado fornecido pela simulação numérica do escoamento, principalmente quanto à coerência entre as flutuações de pressão ao longo do comprimento de envergadura do cilindro e à amplitude de flutuação de força na direção da sustentação exercida na parede do cilindro. / Many components of machines, equipments and means of transport can be represented as a bluff body whose motion through a fluid can generate noise. In this context, this thesis is focused on the study of numerical prediction of noise generated by the flow around bluff bodies. As an example of bluff body, the sound generated from flow around a circular cylinder is studied. The flow over a circular cylinder is investigated by considering the wake as tridimensional and turbulent in the subcritical regime, which is characterized by a laminar boundary layer separation. The flow over a circular cylinder is obtained by time-dependent numerical simulation considering three-dimensional computational domain. In order to cope with turbulence and three-dimensionality, the flow is solved using the Large Eddy Simulation (LES) methodology. The computational domain is discretized by the finite volume method. The noise is calculated separately using the Ffwocs Williams & Hawkings (FW-H) analogy, whose wave equation has as a source term the flow solution provided by the numerical simulation. With regard to the FW-H analogy, the acoustic pressure fluctuation is obtained in the far-field by assuming a quiescent medium between the sound sources region (near-field) and the location considered for acoustic computation. Due to the high computational cost of three-dimensional (3D) simulation, the numerical simulations were conducted with a cylinder span length limited in size, which allows taking into account part of the wake three-dimensionality. Regarding the final acoustic computation, the acoustic correction methods of Kato et al. (1993) and Seo & Moon (2007) are used in order to match the sound obtained by the short cylinder span to the correspondent sound obtained experimentally for a long cylinder span. This thesis contributed to investigate numerically the computational method of applying the Ffwocs Williams & Hawkings analogy for solving the noise generated from a threedimensional flow over a circular cylinder with high Reynolds number, particularly, at Re = 90,000 and Re = 22,000. The results show that this computational method is able to predict the far-field sound for the simulated cases, since the noise spectra obtained are found to be in agreement with the corresponding experimental data. In addition, the acoustic correction method of Kato et al. (1993) and Seo & Moon (2007) provided good predictions with regard to the adding noise computation, however, its results are dependent on accurate estimation of the spanwise coherence length of the flow. Finally, the sound spectrum obtained in the far-field is tied to the flow behavior provided by the numerical simulation, especially regarding the coherence between the pressure fluctuations over the spanwise length of the cylinder and the lift force fluctuation amplitude exerted on the cylinder wall.
177

Efeito da composição físico-química e mineralógica de solos sobre a dinâmica dos íons nitrato, fósforo e potássio / Effect of physicochemical and mineralogical composition of soils on the dynamics of nitrate, phosphorus and potassium ions

Grecco, Katarina Lira 09 August 2019 (has links)
A adubação tem o intuito de fornecer nutrientes (solutos) às plantas em quantidades requeridas no momento adequado, visando obter produções agrícolas economicamente viáveis. Todavia, em alguns casos, o manejo da adubação não é feito de maneira correta, principalmente por se utilizar quantidades excessivas desses nutrientes. Juntando-se a esse fato, a água da irrigação e/ou da chuva, pode vir a ser um facilitador do escoamento superficial e da lixiviação através do perfil de solo, tornando-se, dessa forma, indisponível às plantas e, podem provocar a poluição de águas superficiais através da erosão hídrica e eutrofização, além da contaminação de águas subterrâneas e a acidificação de camadas do solo. Portanto, para evitar esses impactos ambientais, é necessário conhecer e entender a dinâmica de solutos no perfil de solo mediante a obtenção de informações que venham a caracterizar esses processos. Dentro dessas informações, tem-se a obtenção dos parâmetros de transporte de solutos. Tais parâmetros podem sofrer várias interferências do meio poroso, dentre elas a composição físico-química e mineralógica dos solos, a qual poderá determinar a capacidade de retenção ou dispersão desses íons. Dessa forma, o objetivo dessa pesquisa foi avaliar o efeito da composição físico-química e mineralógica de alguns tipos de solo sobre a dinâmica dos íons nitrato, fósforo e potássio, mediante a análise de seus parâmetros de transporte, obtidos pelo ajuste numérico das curvas de distribuição de efluentes (Breakthrough Curves, BTC) aplicando o código CFITIM dentro do software STANMOD (STudio of ANalytical MODels). Além disso, utilizando-se colunas com diferentes alturas (10 e 20 cm) e buscou-se recomendar qual altura de coluna possui acurácia sobre os parâmetros mediante simulações numéricas das BTC\'s pelo modelo HYDRUS-1D. A pesquisa foi conduzida junto ao Departamento de Engenharia de Biossistemas da Universidade de São Paulo (USP/ESALQ). Os tratamentos foram distribuídos em um esquema fatorial de 5 x 2, ou seja, cinco tipos de solo e duas alturas de colunas de solo para cada íon, individualmente. O delineamento experimental foi em blocos casualizados, com três blocos, totalizando 30 parcelas por soluto. Para a análise dos resultados, os parâmetros de transportes foram submetidos à análise de variância e a avaliação do desempenho do modelo pelos índices estatísticos: Raiz do Erro Quadrático Médio (RMSE), Erro Absoluto Médio (MAE) e o Coeficiente de Determinação (R2). Diante dos resultados obtidos, o solo PV foi diferente estatisticamente dos demais solos em todos os íons no coeficiente de dispersão. Diante das diferentes nas alturas das colunas, os solos PV, PVAe, NV e PVAd apresentaram diferenças significativas no fator de retardamento e os coeficientes de distribuição e dispersão nos íons nitrato e potássio. Sendo assim, recomendou-se a altura de 20 cm, pois os parâmetros determinados foram precisos em relação a 10 cm, pelo fato do modelo HYDRUS-1D ter alcançado um desempenho adequado nas simulações das BTC\'s nos solos arenosos e argilosos. / Fertilizer is applied to provide nutrients (solutes) for plants in required quantities, and at the right time, to facilitate economically viable agricultural production. However, in some cases excessive quantities of fertilizers are applied. Such overapplication can result in runoff and ions leaching through the soil profile, where they are unavailable to plants, and can cause surface water pollution by water erosion and eutrophication, besides of groundwater contamination and soil acidification. To avoid these environmental impacts, it is necessary to characterize the transport parameters that govern the dynamic of solutes in soil profile. These parameters are influenced by porous media properties, such as mineralogical composition of soils, that regulate the retention or dispersion of ions. The objective of this study was to evaluate the effect of physicochemical and mineralogical composition of soils on transport parameters of nitrate, phosphorus, and potassium, estimated by using the CFITIM code inside of STANMOD (STudio of ANalytical MODels) software to fit BTC\'s. Besides that, using of columns with different heights (10 and 20 cm) and recommended the columns height with accuracy under transport parameters by numerical simulations of the BTC\'s using the HYDRUS-1D model. The research was conducted in the Department of Biosystems Engineering, University of São Paulo (USP/ESALQ). The treatments were a 5 x 2 factorial with five soils and two column heights for each individual solute. The experimental design was random blocks, with three blocks, totaling 30 plots for each solute. For analysis of results, the transport parameters were submitted a variance analysis and the evaluation of model performance by statistical indexes: Root Mean Square Error (RMSE), Mean Absolute Error (MAE) and Determination Coefficient (R2). The dispersion coefficient for PV soil were significantly different from those for other soils, for all ions. In front of the different heights of the columns, PV, PVAe, NV and PVAd soils showed significant differences in retardation factor, and distribution and dispersion coefficients, for nitrate and potassium ions. The parameters obtained from 20 cm columns were accurate than those obtained from 10 cm height, based on adequate performance of HYDRUS-1D model in BTC\'s simulations of sandy and clay soils.
178

Constructing Computational Models Of Nature For Architecture: A Case On Transcoding The Intelligence Of Cactus

Erdogan, Elif 01 February 2012 (has links) (PDF)
The environment of knowledge exchange between computation and biology elicits a contemporary approach towards architecture. Computation, as an overarching mode of thinking, instructs the analysis, understanding and reinterpretation of the un-formal structure of natural organizations (such as systematic construct, information flow, and process through time) for architectural form generation. Consequently, the computing theory originates a mind-shift where processes, relations, and dependencies are a major concern for reconsidering and re-comprehending the environment. Besides, computation presents universal modes of thinking and tools for modeling, within which transdisciplinary studies and knowledge interchange between distinct disciplines are flourished. This thesis will discuss architectural form generation through interpreting computation as &ldquo / transcoding&rdquo / and an interface, while nature will be regarded as a &ldquo / model&rdquo / and a source for learning. A case study will be conducted by analyzing cactus plants and their common generative logic in the framework of computation. Consequently, the produced computational model of cactus plants will be scrutinized for probable outcomes, questioning what such a re-interpretation of natural systems may imply for architecture.
179

Morphologically simplified conductance based neuron models: principles of construction and use in parameter optimization

Hendrickson, Eric B. 02 April 2010 (has links)
The dynamics of biological neural networks are of great interest to neuroscientists and are frequently studied using conductance-based compartmental neuron models. For speed and ease of use, neuron models are often reduced in morphological complexity. This reduction may affect input processing and prevent the accurate reproduction of neural dynamics. However, such effects are not yet well understood. Therefore, for my first aim I analyzed the processing capabilities of 'branched' or 'unbranched' reduced models by collapsing the dendritic tree of a morphologically realistic 'full' globus pallidus neuron model while maintaining all other model parameters. Branched models maintained the original detailed branching structure of the full model while the unbranched models did not. I found that full model responses to somatic inputs were generally preserved by both types of reduced model but that branched reduced models were better able to maintain responses to dendritic inputs. However, inputs that caused dendritic sodium spikes, for instance, could not be accurately reproduced by any reduced model. Based on my analyses, I provide recommendations on how to construct reduced models and indicate suitable applications for different levels of reduction. In particular, I recommend that unbranched reduced models be used for fast searches of parameter space given somatic input output data. The intrinsic electrical properties of neurons depend on the modifiable behavior of their ion channels. Obtaining a quality match between recorded voltage traces and the output of a conductance based compartmental neuron model depends on accurate estimates of the kinetic parameters of the channels in the biological neuron. Indeed, mismatches in channel kinetics may be detectable as failures to match somatic neural recordings when tuning model conductance densities. In my first aim, I showed that this is a task for which unbranched reduced models are ideally suited. Therefore, for my second aim I optimized unbranched reduced model parameters to match three experimentally characterized globus pallidus neurons by performing two stages of automated searches. In the first stage, I set conductance densities free and found that even the best matches to experimental data exhibited unavoidable problems. I hypothesized that these mismatches were due to limitations in channel model kinetics. To test this hypothesis, I performed a second stage of searches with free channel kinetics and observed decreases in the mismatches from the first stage. Additionally, some kinetic parameters consistently shifted to new values in multiple cells, suggesting the possibility for tailored improvements to channel models. Given my results and the potential for cell specific modulation of channel kinetics, I recommend that experimental kinetic data be considered as a starting point rather than as a gold standard for the development of neuron models.
180

Elucidation of dendritic cell response-material property relationships using high-throughput methodologies

Kou, Peng Meng 07 July 2011 (has links)
Ongoing advances in tissue engineering with the goal to address the clinical shortage of donor organs have encouraged the design and development of biomaterials to be used in tissue-engineered scaffolds. Furthermore, biomaterials have been used as delivery vehicles for vaccines that aim to enhance the protective immunity against pathogenic agents. These tissue-engineered constructs or vaccines are usually combination products that combine biomaterial and biological (e.g. cells, proteins, and/or DNA) components. Upon introduction into the body, the host response towards these products will be a combination of both a non-specific inflammatory response towards the biomaterial and an antigen-specific immune response towards the biological component(s). Recently, the biomaterial component was shown to influence the immune response towards a co-delivered antigen. Specifically, poly(lactic-co-glycolic acid) (PLGA), but not agarose, scaffolds or microparticles (MPs) enhanced the humoral response to a model antigen, ovalbumin. This in vivo result echoed with the in vitro study that PLGA, but not agarose, supported a mature phenotype of dendritic cells (DCs), the most potent antigen-presenting cells. Therefore, it is hypothesized that the effect of biomaterials on DC phenotype may influence the adaptive immunity against a co-delivered antigen. Understanding how biomaterials affect DC response will facilitate the selection and design of biomaterials that direct a desired immune response for tissue engineering or vaccine delivery applications. The objectives of this research were to elucidate the correlations between material properties and DC phenotype, develop predictive models for DC response based on material properties, and uncover the molecular basis for DC response to biomaterials. Well-defined biomaterial systems, including clinical titanium (Ti) substrates and two polymer libraries, were chosen to study induced DC phenotype. Due to the time-consuming nature of conventional methods for assessing DC phenotype, a high-throughput (HTP) method was first developed to screen for DC maturation based on surface marker expression (CHAPTER 4). A 96-well filter plate-based HTP methodology was developed and validated for the assessment of DC response to biomaterials. A "maturation factor", defined as CD86/DC-SIGN and measured by immunostaining, was found to be a cell number-independent metric for DC maturation and could be adapted to screen for DC maturation in a microplate format. This methodology was shown to reproducibly yield similar results of DC maturation in response to biomaterial treatment as compared to the conventional flow cytometric method upon DC treatment in 6-well plates. In addition, the supernatants from each treatment could easily be collected for cytotoxicity assessment using glucose-6-phosphate dehydrogenase (G6PD)-based assay and cytokine profiling using multiplex technology. In other words, the 96-well filter plate-based methodology can generate three outcomes from one single cell culture: 1) maturation marker expression, 2) cytotoxicity, and 3) cytokine profile. To examine which material properties were critical in determining DC phenotype, a set of three clinical titanium (Ti) substrates with well-defined surfaces was used to treat DCs (CHAPTER 5). These Ti substrates included pretreatment (PT), sand-blasted and acid-etched (SLA), and modified SLA (modSLA), with different roughness and surface energy. DCs responded differentially to these substrates. Specifically, PT and SLA induced a mature DC (mDC) phenotype, while modSLA-treated DCs remained immature based on surface marker expression, cytokine production profiles and cell morphology. Both PT and SLA induced higher CD86 expression as compared to iDC control, while modSLA maintained CD86 expression at a level similar to iDC. PT- or SLA-treated DCs exhibited dendritic processes associated with a mDC phenotype, while modSLA-treated DCs were rounded, a morphology associated with an iDC phenotype. Furthermore, PT induced increased secretion of MCP-1 by DCs compared to iDCs, indicating that PT promoted a pro-inflammatory environment. SLA induced higher IL-16 production, which is a pleiotropic cytokine, by DCs, most likely as a pro-inflammatory response due to the enhanced maturation of DCs induced by SLA. In contrast, modSLA did not induced enhanced production of any cytokines examined. Principal component analysis (PCA) were used to reduce the multi-dimensional data space and confirmed these experimental results, and it also indicated that the non-stimulating property of modSLA co-varied with certain surface properties, such as high surface hydrophilicity, % oxygen and % titanium of the substrates. In contrast, high surface % carbon and % nitrogen were more associated with a mDC phenotype. Furthermore, PCA also suggested that surface line roughness (Ra) did not contribute to the expression of CD86, an important maturation marker, suggesting that roughness had little impact on DC response (CHAPTER 5). DC response-material property relationships were also derived using more complex materials from a combinatorial library of polymethacrylates (pMAs) (CHAPTER 6). Twelve pMAs were selected and were found to induce differential DC response using the HTP method described in CHAPTER 4. These pMAs resulted in a trend of increasing DC maturation represented by the metric CD86/DC-SIGN, which was consistent with the trends of the production of pro-inflammatory cytokine, TNF-α, and chemokine, IL-8. Interestingly, this set of pMAs induced an opposite trend of IL-16 production, which is most likely released as an anti-inflammatory cytokine in this situation. These polymers were characterized extensively for a number of material properties, including surface chemical composition, glass transition temperature (Tg), air-water contact angle, line roughness (Ra), surface roughness (Sa), and surface area. Similar to the results from the Ti study, PCA determined that surface carbon correlated with enhanced DC maturation, while surface oxygen was associated with an iDC phenotype. In addition, Tg, Ra, and surface area were unimportant in determining DC response. Partial square linear regression (PLSR), a multivariate modeling approach, was implemented using the pMAs as the training set and a separate polymer library, which contained methacrylate- and acrylate-based terpolymers, as the prediction set. This model successfully predicted DC phenotype in terms of surface marker expression with R2prediction = 0.76. Furthermore, prediction of DC phenotype was effective based on only theoretical chemical composition of the bulk polymers with R2prediction = 0.80 (CHAPTER 6). Nonetheless, one should note that a predictive model can be only as good as what it is trained on and cannot be used to predict the DC response induced by a type of materials different from the training set. Also, this model might not contain all the important material properties such as polymer swelling and cannot predict specific types of immune responses. However, these results demonstrated that a generalized immune cell response can be predicted from biomaterial properties, and computational models will expedite future biomaterial design and selection (CHAPTER 6). From the pMA library, pMAs that induced the two extremes of DC phenotype (mature or immature) were identified for elucidating the mechanistic basis of biomaterial-induced DC responses (CHAPTER 7). Two pMAs, polyhydroxyethylmethacrylate (pHEMA) and poly(isobutyl-co-benzyl-co-terahydrofurfuryl)methacrylate (pIBTMA), were selected because they induced the least and the most mature DC phenotype, respectively. These pMAs were used to elucidate the activation profiles of transcription factors in DCs after biomaterial treatment and were compared to the iDC and mDC controls. In addition, a combined treatment of pHEMA and LPS was also included to determine if pHEMA could maintain an iDC phenotype in the presence of LPS. Interestingly, pIBTMA induced DC maturation primarily through the activation of NF-κB, while pHEMA mediated suppression of DC maturation through multiple TFs, including the activation of ISRE, E2F-1, GR-PR, NFAT, and HSF. GR-PR and E2F-1 have been shown to be associated with the suppression of DC maturation; ISRE, E2F-1, and NFAT are linked to apoptosis induction; HSF regulates the production of heat shock proteins (HSPs) that induce DC maturation and inhibit apoptosis. The activation of HSF by pHEMA was most likely a natural defensive mechanism against the other apoptotic signals. Therefore, pHEMA suppressed DC maturation through the induction of apoptosis. Surprisingly, in the presence of pHEMA, the effect of LPS was completely eliminated, suggesting that biomaterials can override the effect of soluble factors. The morphology and surface marker expression of DCs treated with these different biomaterials or controls were consistent with TF activation profiles (CHAPTER 7). Overall, this research illustrates that biomaterial properties, within the chosen biomaterial space, can be correlated to DC phenotype and more importantly, can be used as predictors for relative levels of DC phenotype. Furthermore, the differential responses induced by different biomaterials were mediated through the distinct activation profiles of transcription factors. Together, these findings are expected to facilitate the design and selection of biomaterials that direct desired immune responses.

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