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Biomass recalcitrance has been recognized as one of the major barriers that hided the cost-effective conversion of lignocellulosic biomass to bioethanol, therefore the current bioconversion process require an essential step known as pretreatment to increase the cellulose accessibility. This thesis provides information about changes in cellulose accessibility upon different pretreatments, along with how these pretreatments alter the chemical and physical structures of biomass, will be extremely helpful to further optimize the current pretreatment process. Multiple promising analytical techniques including Simons’ stain, NMR cryoporometry, relaxometry, mercury porosimetry was introduced and successfully applied on pretreated biomass samples to characterize the cellulose accessible surface area and biomass porosity. Different pretreatments increase cellulose accessibility through different mechanisms to different extent. Dilute acid pretreatment is more effective than steam explosion in terms of increasing accessible surface area of cellulose as reflected by Simons’ stain and NMR cryoporometry, while NMR relaxometry suggested steam explosion is more effective at pore expansion for the cell wall water pools detected by changes in NMR relaxation time. Alkaline pretreatment decreased cellulose degree of polymerization, cellulose crystallinity, lignin content and subsequently increased cellulose accessibility, with sodium hydroxide pretreatment proved to be much more effective compared lime or soaking in ammonia pretreatment. Delignification through alkaline-based pretreatment is found less effective than removal of hemicellulose using acid in terms of cellulose accessibility increase. Lignin didn’t directly dictate cellulose accessibility but rather restricted xylan accessibility which in turn controls the access of cellulase to cellulose. Pore size distribution analysis based on mercury porosimetry also indicated that the most fundamental barrier in terms of biomass porosity scale for efficient enzymatic hydrolysis is the nano-pore space formed between coated microfibrils, despite some of the porous architecture such as cell lumen and pit could be severely destroyed after pretreatment. The action of cellulase on the characteristics of cellulosic fractions obtained from pretreated biomass was also investigated. Cellulose accessibility was found to increase at the beginning of hydrolysis, and after reaching a maximum value then starting to decrease. Enzymatic hydrolysis resulted in a rapid decrease in the cellulose degree of polymerization then gradually leveled off, suggesting the existence of a synergistic action of endo- and exo-glucanases that contribute to the occurrence of a peeling off type mechanism.

The aim of the study was to find out the relationship between the DP and the tensile properties of different regenerated cellulose fibers. During the process to make regenerated cellulose fibers from wood, the reduction in DP of cellulose is a necessary process to enable fiber extrusion. The reduction of the DP is usually from 1000 to 350 (Coley 1953). The reduction in DP is necessary, first to make the cellulose soluble, and then further decrease in DP is required to control the viscosity of the solution to minimize the mechanical difficulties during processing faced. It is a fact that the reduction in DP is a compromise which is necessary, as reduction in DP means reduction in tensile properties of the fiber produced. The reduction in DP is optimized to make the process both processing and the final product more feasible. The relation in DP and the strength of the fibers is rather obvious i.e. higher the DP higher the tensile strength, but researchers have different views regarding the relationship. By the experiments performed by us we tried to come to a conclusion regarding the difference in opinions. Different types of regenerated cellulose fibers were collected from various sources. Both wet and dry tenacities of 19 different viscose, bamboo viscose, kupro viscose, modal and Tencel fibers were determined. The fiber linear density was also measured, but for some samples we had to take the fiber density value as provided by the manufacturer, due to the limitation of the instrument regarding the fiber length and low fiber linear density. Then out of all the samples 10 were selected (based on our and company’s interest). SEC analysis was used to determine the DP of the samples. These tests were not carried out by us but by MoRe Research. The results of both the analysis were gathered, analyzed and commented upon. / Program: Master Programme in Textile Technology

The degree of polymerization (DP) is the main factor which plays a role in cellulose aging. The adverse consequence of cellulose fibers aging is the deterioration of mechanical and optical properties. Viscometry is a technique which is frequently used for determination of degree of polymerization of cellulose fibers. The aim of the work was to determine the degree of polymerization of cotton fabrics and to investigate the dependence of DP on number of washing and dying. Next task was to investigate if there exists a corellation between DP and results from thermal and thermo-oxidative degradation studied by methods of thermal analysis. First, the traditional viscometry was employed to determine DP of cellulose fibers. It has been demonstrated that number of washing and dying decreases the DP. In the second part the differential scanning calorimetry (DSC) and thermogravimetry (TG) were used. DSC provided values of combustion heat and TG allowed the detail evaluation of degradation steps; obtained results were further used for correlation with DP. Methods of thermal analysis revealed differences between cotton wool and treated fabrics. Combustion heat did not show any correlation with DP. In contrast, results from TG suggested some promising correlations which could be used for the prediction of cotton fabrics DP using thermal analysis in the future.

京都大学 / 0048 / 新制・課程博士 / 博士(農学) / 甲第20449号 / 農博第2234号 / 新制||農||1050(附属図書館) / 学位論文||H29||N5070(農学部図書室) / 京都大学大学院農学研究科森林科学専攻 / (主査)教授 矢野 浩之, 教授 木村 恒久, 教授 髙野 俊幸 / 学位規則第4条第1項該当 / Doctor of Agricultural Science / Kyoto University / DFAM

Flavanols are polyphenols that are known to have many beneficial effects on the body. Cocoa is a major source of these flavanols. However, research on the potential anti-obesity and anti-diabetic health benefits of cocoa flavanols is lacking in the literature. Furthermore, the effect that the size of these flavanols has on the extent of its beneficial properties is also unclear. The objective of this study was to evaluate the dietary effects of cocoa flavanols on the onset of obesity, insulin resistance and impaired glucose tolerance and to determine the impact that the size of these compounds has on the magnitude of this effect. Cocoa extract was fractionated into a monomer-, an oligomer-, and a polymer-rich fraction. Six groups (n=9) of C57BL/6J mice were fed either a control low-fat diet, a control high-fat diet, or a high-fat diet supplemented with 25 mg/kg*BW of cocoa extract or one of the three cocoa fractions. After 12 weeks on these diets, the oligomer-rich fraction proved to be most effective in preventing weight gain, fat mass accumulation, elevated fasting blood glucose and impaired glucose tolerance in diet-induced obese mice. This is the first long-term feeding study to examine the relative activities of cocoa constituents on diet-induced obesity and insulin resistance. / Master of Science in Life Sciences

Procyanidins (PCs) have been extensively investigated for their potential health protective activities, but the prospective bioactivities are limited by their poor bioavailability. The majority of the ingested dose remains unabsorbed and reaches the colon where extensive microbial metabolism occurs. The objectives of these studies are to better understand the roles and activities of PCs in the lower gastrointestinal tract. First, a new high-throughput Ultra Performance Liquid Chromatography-Tandem Mass Spectrometry method was developed to efficiently analyze PCs and an extensive profile of their microbial metabolites. This method is sufficiently sensitive and effective in simultaneously extracting and measuring native PCs and their microbial metabolites in biological samples. Furthermore, administration of grape seed extract increased the expression of gut junction protein occludin and reduced levels of fecal calprotectin, which suggests an improvement of gut barrier integrity and a potential modulation of endotoxemia. Additionally, chronic supplementation of the diet with flavanols did not increase colonic tissue accumulation of PCs or their microbial metabolites over a 12 week feeding study. This was the first long-term study of its kind, and the results indicate that we still do not fully understand the outcome of ingested flavanols in the colon during chronic exposure rather than acute doses. Lastly, new understanding of the microbial metabolism of PCs in the colon has been reached by studying the colon as 4 segments, rather than as a complete unit as previous studies have done. Data show that a gradient is established along the length of the colon for both PCs and their metabolites, with PCs reaching highest concentrations within 3 h after ingestion, while metabolites reach maximum concentrations anywhere form 3-18 h after ingestion. Moreover, data indicate the progressive, step-wise degradation of PCs into small metabolites throughout the length of the colon. Overall, there is greater understanding of the colonic metabolism of dietary PCs derived from GSE and cocoa, the accumulation of these compounds, and their effect on gut permeability. Future work will build off of these novel studies, and will continue to advance the understanding of the health benefits of dietary PCs. / Ph. D.

Consumption of cocoa and dark chocolate products has been associated with positive health outcomes including reduced onset of cardiovascular disease, inflammation, diabetes, obesity, and platelet disorders. Cocoa polyphenols, putatively responsible for these beneficial activities, are highly impacted by cocoa variety, agronomic effects and processing history. However, the difference in polyphenol concentration and composition between cocoa products originating from different hybrid clones (selected for high yield) or from different fermentation conditions is not fully understood. Detailed polyphenol characterization including determination of total polyphenol and total procyanidin concentrations, and qualitative and quantitative analysis of (mean) degree of polymerization was conducted. Significant differences in total polyphenol and procyanidin concentrations were observed between five genetic clones grown by the USDA-ARS Cocoa Germplasm Repository located in Mayagüez, Puerto Rico. To facilitate cocoa fermentation research in laboratories distant from cocoa harvesting sites, a laboratory-scale cocoa fermentation model system was developed in this study. This model system used dried, unfermented, cocoa beans and simulated pulp medium as the starting material. The model system supported growth of the essential succession of cocoa fermenting microorganisms and generated similar chemical changes to those observed in on-farm cocoa fermentation. Using this model system, the impact of inoculation with proprietary yeast strains Saccharomyces cerevisiae Lev F and Saccharomyces cerevisiae Lev B on cocoa polyphenol concentration and composition was evaluated. Inoculation with both yeast strains resulted in increased fermentation rate and Lev B inoculation resulted in higher total polyphenol and procyandin contents at the end of fermentation. Overall, the present work addressed the influence of cocoa variety selection and fermentation process conditions on the composition and concentration of polyphenols. These findings will contribute to continued efforts to develop cocoa products with optimized bioactivity and maximum disease preventative effects. / PHD / Annual worldwide cocoa production exceeds four million tons and the cocoa market impacts not only cocoa growing regions, but also countries producing cocoa products. Consumption of cocoa and dark chocolate products has been associated with positive health outcomes including reduced onset of cardiovascular disease, inflammation, diabetes, obesity, and platelet disorders. Cocoa polyphenols, compounds increasingly associated with health benefits, are highly impacted by the variety and processing history of cocoa. However, the extent to which cocoa genetic variety and processing conditions impact polyphenol concentration and composition is not fully understood. Polyphenol characterization was conducted for five genetic varieties sourced from the USDA cocoa germplasm repository located in Mayagüez, Puerto Rico and it was found that genetic variance could contribute to differences in polyphenol concentration. The main focus in this thesis was to develop laboratory cocoa fermentation model system to facilitate cocoa research in laboratories distant from the cocoa growing region. This model system used dried, unfermented cocoa beans and simulated pulp medium as the starting material. The model system was effective in that it supported growth of the essential succession of coca fermenting microorganisms and generated similar chemical changes to those observed in on-farm cocoa fermentation. This model system could be further applied to test the impact of fermentation conditions on cocoa bean quality. The potential for using yeast starter cultures to improve control and consistency of cocoa fermentation was evaluated using the model fermentation system. Yeast inoculation improved fermentation rate, and polyphenol concentration in fermented beans was higher when cocoa fermentation was inoculated with the yeast strain Saccharomyces cerevisiae Lev B. Overall, the present work addressed the influence of cocoa variety selection and fermentation process conditions on the composition and concentration of polyphenols. These findings will contribute to continued efforts to develop cocoa products optimized for maximum health benefits.

Lignocellulosic bioethanol is currently being explored as a substitution to fossil fuels. Many lignocellulosic materials are being examined but the importance is to find those with attractive agro-energy features. Producing lignocellulosic ethanol is challenging because lignocellulosic biomass is resistant to chemical and biological degradation. To reduce biomass recalcitrance, a pretreatment stage is required. Pretreatment is considered to be the most intensive operating/operating cost component of cellulosic ethanol production. Therefore, research is heavily focused on understanding the effect of pretreatment technologies on the fundamental characteristics of lignocellulosic biomass. The first study in the thesis investigates Buddleja davidii as a potential biomass source for bioethanol production. The work focuses on the determination of ash, extractives, lignin, hemicellulose, and cellulose content in this plant, as well as detailed elucidation of the chemical structures of both lignin and cellulose by NMR spectroscopy. The study showed that B. davidii has several unique agro-energy features as well as some undesired characteristics. The second study presents research on the ethanol organosolv pretreatment (EOP) of B. davidii and its ability to produce enzymatically hydrolysable substrates. It was concluded that the removal of hemicellulose, delignification, reduction in the degree of polymerization (DP) of cellulose, and the conversion of crystalline cellulose dimorphs (Iα/Iβ) to the easily degradable para-crystalline and amorphous celluloses were the characteristics accounted for efficient enzymatic deconstruction of B. davidii after EOP. The third study provides a detailed elucidation of the chemical structure of ethanol organosolv lignin (EOL) of B. davidii by NMR spectroscopy. Such research was needed to understand the pretreatment mechanism in the context of delignification and alteration of the lignin structure. Future applications of the resulted EOL will be valuable for industrially viable bioethanol production process. EOP mainly cleaved β-O-4' interlinkages via homolysis, decreased the DP of lignin, and increased the degree of condensation of lignin. EOL had low oxygen content, molecular weight, and aliphatic OH as well as high phenolic OH, which are qualities that make it suitable for different co-product applications. The last study provides information on the anatomical characteristics of pretreated B. davidii biomass after EOP. The importance of this research was to further understand the alterations that occur to the cellular structure of the biomass which can then be correlated with its enzymatic digestibility. The results concluded that the physical distribution of lignin within the biomass matrix and the partial removal of middle lamella lignin were key factors influencing enzymatic hydrolysis.

Les chitooligosaccharides (COS) présentent des propriétés biologiques intéressantes telles que l'activité antimicrobienne, antifongique et antitumorale. Dans ce travail, nous avons utilisé les COS pour des applications très diverses, telles que l'ingénierie des cellules neuronales (blocage de la formation du réseau périneuronal), la complexation des cations Fe2+ et Fe3+ pour la synthèse de particules supermagnatiques et enfin pour le développement de conjugués fonctionnels à base de COS. Dans le cadre de ces études en partenariat, nous avons travaillé sur l'élaboration de chitooligosaccharides à structure contrôlée afin d’étudier leurs propriétés physico-chimiques ou biologiques. Des modifications de chitooligosaccharides ont été effectuées dans ce travail de deux façons: la modification par N-substitution et la modification par le groupe aldéhyde du résidu 2,5-anhydro-D-mannofuranose (amf) à l'extrémité réductrice des chitooligosaccharides. Les premiers types de COS consistent en la désamination suivie d'une réaction de N-réacétylation afin de contrôler (partiellement) à la fois le degré moyen d'acétylation et le degré moyen de polymérisation. La seconde stratégie consiste en la synthèse de nouveaux COS fonctionnalisés à leur extrémité réductrice par amination réductrice et oximation avec différents groupes chimiques cliquables (c'est-à-dire alcyne, alcène, azide, thiol et hydrazide). En fonction des COS fonctionnalisé ciblé, différentes techniques d'analyse ont été réalisées pour analyser pleinement leurs caractéristiques structurales telles que la spectroscopie RMN, la spectrométrie de masse MALDI-TOF, la chromatographie HPLC, la spectroscopie RAMAN et la chromatographie SEC. Des structures chimiques spécifiques de chitooligosaccharides modifiés ont été étudiées dans le but de les utiliser pour moduler le réseau périneural de neurones et l'établissement de connexions synaptiques. Nous avons également montré que les COS solubles permettent la précipitation des nanoparticules supramagnétiques de Fe3O4 avec un revêtement COS en les rendant moins toxiques. Enfin, les COS fonctionnalisés à leur extrémité réductrice pourraient être des intermédiaires utiles pour le développement de nouveaux conjugués fonctionnels à base de chitosane / Chitooligosaccharides (COS) classically present several biological properties such as anti-microbial, anti-tumor and anti-fungal activity. In this work, we used COS for widely different applications, such as tissue engeneering of neuronal cells (blocking of perineuronal net formation), the complexation of iron cations (Fe2+ and Fe3+) for the synthesis of supermagnatic particle and finally for the development of advanced functional COS-based conjugates. In this partnership studies, we worked on the elaboration of controlled structure chitooligosaccharides in order to decipher their physico-chemical or biological properties. Further modification of chitooligosaccharides was performed in this thesis in two ways: modification via amine N-substitution and the modification via the 2,5-anhydro-D-mannofuranose (amf) aldehyde group located at the reducing end of chitooligosaccharides. The first COS types consist in the nitrous depolymerization followed by N-acetylation in order to (partly) control both the mean degree of N-acetylation and the degree of polymerization. The second consist in the synthesis of new COS-based building blocks functionalized at their reducing end by reductive amination and oximation with different clickable chemical groups (i.e. alkyne, alkene, azide, thiol, and hydrazide). Depending on the targeted functionalized COS, different analysis techniques were carried out to fully characterize such as NMR spectroscopy, MALDI-TOF mass spectrometry, HPLC-chromotography, RAMAN spectroscopy and SEC chromatography. Specific chitooligosaccharides were studied in the objective to use them to modulate the perineuronal net of neurons, and the establishment of synaptic connections. We also showed that water soluble COS permit the precipitation of supramagnetic Fe3O4 nanoparticles with a COS coating and succeded in decreasing their toxicity. Finally we have shown that COS-based building blocks could be useful intermediates for the development of advanced functional COS-based conjugates such as COS-b-PEG diblock copolymers