Adaptation and acclimation to different temperatures of obligate psychrophilic, facultative psychrophilic and mesophilic yeasts. Production of ω-3 and ω-6 polyunsaturated fatty acids by fermentative way. Obligate psychrophilic, facultative psychrophilic and mesophilic yeasts were cultured in a carbon rich medium at different temperatures to investigate if growth parameters, lipid accumulation and fatty acid composition were adaptive and/or acclimatory responses. Acclimation of facultative psychrophiles and mesophiles to lower temperature negatively affected their specific growth rate. Obligate psychrophiles exhibited the highest biomass yield (YX/S), followed by facultative psychrophiles, then by mesophiles. The growth temperature did not influence the YX/S of facultative psychrophiles and mesophiles. Acclimation to lower temperature caused the increase in lipid yield (YL/X) in mesophilic yeasts, but did not affect YL/X in facultative psychrophiles. Similar YL/X were found in both facultative and obligated psychrophiles, suggesting that lipid accumulation is not a distinctive character of adaptation to permanently cold environments. The extent of unsaturation of fatty acids was one major adaptive feature of the yeasts which colonize permanently cold ecosystems. Remarkable amounts of α-linolenic acid were found in obligate psychrophiles at the expenses of linoleic acid, whereas it was generally scarce or absent in all the others strains. Increased unsaturation of fatty acids was also an acclimatory response of mesophiles and facultative psychrophiles to lower temperature. It’s well known that omega-3 polyunsaturated fatty acids (PUFAs) display a variety of beneficial effects on various organ systems and diseases, therefore a process for the microbial production of omega-3 PUFAs would be of great interest. This work sought also to investigate if one of the better psychrophilic yeast, Rhodotorula glacialis DBVPG 4785, stimulated by acclamatory responses, produced omega-3 PUFAs. In fact, the adaptation of psychrophilic yeasts to cold niches is related to the production of higher amounts of lipids and to increased unsaturation degree of fatty acids, presumably to maintain membrane fluidity and functionality at low temperatures. Bioreactor fermentations of Rhodotorula glacialis DBVPG 4785 were carried out at 25, 20, 15, 10, 5, 0, and -3°C in a complex medium with high C:N ratio for 15 days. High biomass production was attained at all the temperatures with a similar biomass/glucose yield (YXS), between 0.40 and 0.45, but the specific growth rate of the strain decreased as the temperature diminished. The coefficients YL/X have been measured between a minimum of 0.50 to a maximum of 0.67, but it was not possible to show a clear effect of temperature. Similarly, the coefficient YL/S ranges from a minimum of 0.22 to a maximum of 0.28: again, it does not appear to be any significant changes due to temperature. Among omega-3 PUFAs, only α-linolenic acid (ALA, 18:3n-3) was found at temperatures below to 0°C, while, it’s remarkable, that the worthy arachidonic acid (C20:4,n-6), stearidonic acid (C20:4,n-3) C22:0 and docosahexaenoic acid (C22:6n-3) were produced only at the late exponential phase and the stationary phase of batch fermentations at 0 and -3°C. The docosahexaenoic acid (DHA) is a beneficial omega-3 PUFA that is usually found in fatty fish and fish oils. The results herein reported improve the knowledge about the responses which enable psychrophilic yeasts to cope with cold and may support exploitation of these strains as a new resource for biotechnological applications.

Faithful replication of DNA from one generation to the next is crucial for long-term species survival. Genomic integrity in prokaryotes, archaea and eukaryotes is dependent on efficient and accurate catalysis by multiple DNA polymerases. Escherichia coli possesses five known DNA polymerases (Pol). DNA polymerase III holoenzyme is the major replicative polymerase of the Escherichia coli chromosome (Kornberg, 1982). This enzyme contains two Pol III cores that are held together by a t dimer (Studwell-Vaughan and O’Donnell, 1991). The core is composed of three different proteins named α-, ε- and θ-subunit. The α-subunit, encoded by dnaE, contains the catalytic site for DNA polymerisation (Maki and Kornberg, 1985), the ε-subunit, encoded by dnaQ, contains the 3′→5′ proofreading exonuclease (Scheuermann, et al., 1983) and the θ-subunit, encoded by hole, that has no catalytic activity (Studwell-Vaughan, and O'Donnell, 1983). The three-subunit α–ε–θ DNA pol III complex is the minimal active polymerase form purified from the DNA pol III holoenzyme complex; these three polypeptides are tightly associated in the core (McHenry and Crow, 1979) Despite a wealth of data concerning the properties of DNA polymerase III in vitro, little information is available on the assembly in vivo of this complex enzyme. In this study it is shown that the C-terminal region of the proofreading subunit is labile and that the ClpP protease and the molecular chaperones GroL and DnaK control the overall concentration in vivo of ε. Two α-helices (comprising the residues E311-M335 and G339-D353, respectively) of the N-terminal region of the polymerase subunit were shown to be essential for the binding to ε. These informations could be utilized to produce a conditional mutator strain in which proofreading activity would be titrated by a a variant that can only bind e and that is polymerase-deficient. In this way the replication of DNA made by DNA Pol-III holoenzyme would accordingly become error-prone.

The aim of this PhD thesis is to study accurately and in depth the figure and the literary production of the intellectual Jacopo Aconcio. This minor author of the 16th century has long been considered a sort of “enigmatic character”, a profile which results from the work of those who, for many centuries, have left his writing to its fate: a story of constant re-readings and equally incessant oversights. This is why it is necessary to re-read Aconcio’s production in its entirety and to devote to it a monographic study. Previous scholars’ interpretations will obviously be considered, but at the same time an effort will be made to go beyond them through the analysis of both published and manuscript sources, in the attempt to attain a deeper understanding of the figure of this man, who was a Christian, a military and hydraulic engineer and a political philosopher,. The title of the thesis was chosen to emphasise how, throughout the three years of the doctorate, my research concentrated in equal measure and with the same degree of importance on all the reflections and activities of Jacopo Aconcio. My object, in fact, was to establish how and to what extent the methodological thinking of the intellectual found application in, and at the same time guided, his theoretical and practical production. I did not mention in the title the author’s religious thinking, which has always been considered by everyone the most original and interesting element of his production, because religion, from the Reformation onwards, was primarily a political question and thus it was treated by almost all the authors involved in the Protestant movement - Aconcio in the first place. Even the remarks concerning the private, intimate sphere of faith have therefore been analysed in this light: only by acknowledging the centrality of the “problem of politics” in Aconcio’s theories, in fact, is it possible to interpret them correctly. This approach proves the truth of the theoretical premise to my research, that is to say the unity and orderliness of the author’s thought: in every field of knowledge, Aconcio applies the rules of the methodus resolutiva, as a means to achieve knowledge and elaborate models of pacific cohabitation in society. Aconcio’s continuous references to method can make his writing pedant and rather complex, but at the same time they allow for a consistent and valid analysis of different disciplines. I have not considered the fact that most of his reflections appear to our eyes as strongly conditioned by the time in which he lived as a limit. To see in him, as some have done, the forerunner of Descartes’ methodological discourse or, conversely, to judge his religious theories as not very modern, is to force the thought of an author who was first and foremost a Christian man of his own time. Aconcio repeats this himself several times in his writings: he wants to provide individuals with the necessary tools to reach a full-fledged scientific knowledge in the various fields, and also to enable them to seek truth incessantly in the religious domain, which is the duty of every human being. The will to find rules, instruments, effective solutions characterizes the whole of the author’s corpus: Aconcio feels he must look for truth in all the arts, aware as he is that anything can become science as long as it is analysed with method. Nevertheless, he remains a man of his own time, a Christian convinced of the existence of God, creator and governor of the world, to whom people must account for their own actions. To neglect this fact in order to construct a “character”, a generic forerunner, but not participant, of whatever philosophical current, is a dangerous and sidetracking operation. In this study, I have highlighted how Aconcio’s arguments only reveal their full meaning when read in the context in which they were born, without depriving them of their originality but also without charging them with meanings they do not possess. Through a historical-doctrinal approach, I have tried to analyse the complex web of theories and events which constitute the substratum of Aconcio’s reflection, in order to trace the correct relations between texts and contexts. The thesis is therefore organised in six chapters, dedicated respectively to Aconcio’s biography, to the methodological question, to the author’s engineering activity, to his historical knowledge and to his religious thinking, followed by a last section concerning his fortune throughout the centuries. The above-mentioned complexity is determined by the special historical moment in which the author lived. On the one hand, thanks to the new union between science and technique, the 16th century produces discoveries and inventions which make available a previously unthinkable number of notions and lead to a “revolution” in the way of studying and teaching the different subjects, which, by producing a new form of intellectual, involved in politics but also aware of scientific-technological issues, will contribute to the subsequent birth of modern science. On the other, the 16th century is ravaged by religious conflicts, which shatter the unity of the Christian world and generate theological-political disputes which will inform the history of European states for many decades. My aim is to show how Aconcio’s multifarious activity is the conscious fruit of this historical and religious situation, as well as the attempt of an answer to the request of a new kind of engagement on the intellectual’s behalf. Plunged in the discussions around methodus, employed in the most important European courts, involved in the abrupt acceleration of technical-scientific activities, and especially concerned by the radical religious reformation brought on by the Protestant movement, Jacopo Aconcio reflects this complex conjunction in his writings, without lacking in order and consistency, differently from what many scholars assume. The object of this work, therefore, is to highlight the unity of the author’s thought, in which science, technique, faith and politics are woven into a combination which, although it may appear illogical and confused, is actually tidy and methodical, and therefore in agreement with Aconcio’s own intentions and with the specific characters of European culture in the Renaissance. This theory is confirmed by the reading of the Ars muniendorum oppidorum, Aconcio’s only work which had been up till now unavailable. I am persuaded that only a methodical reading of Aconcio’s works, without forgetting nor glorifying any single one, respects the author’s will. From De methodo (1558) onwards, all his writings are summae, guides for the reader who wishes to approach the study of the various disciplines. Undoubtedly, Satan’s Stratagems (1565) is something more, not only because of its length, but because it deals with the author’s main interest: the celebration of doubt and debate as bases on which to build religious tolerance, which is the best method for pacific cohabitation in society. This, however, does not justify the total centrality which the Stratagems have enjoyed for centuries, at the expense of a proper understanding of the author’s will to offer examples of methodological rigour in all sciences. Maybe it is precisely because of the reforming power of Aconcio’s thought that, albeit often forgotten throughout the centuries, he has never ceased to reappear and continues to draw attention, both as a man and as an author. His ideas never stop stimulating the reader’s curiosity and this may ultimately be the best demonstration of their worth, independently from the historical moment in which they come back to the surface.

No description available.

No description available.

Benessere delle popolazioni, gestione sostenibile delle risorse, povertà e degrado ambientale sono dei concetti fortemente connessi in un mondo in cui il 20% della popolazione mondiale consuma più del 75% delle risorse naturali. Sin dal 1992 al Summit della Terra a Rio de Janeiro si è affermato il forte legame tra tutela dell’ambiente e riduzione della povertà, ed è anche stata riconosciuta l’importanza di un ecosistema sano per condurre una vita dignitosa, specialmente nelle zone rurali povere dell’Africa, dell’Asia e dell’America Latina. La natura infatti, soprattutto per le popolazioni rurali, rappresenta un bene quotidiano e prezioso, una forma essenziale per la sussistenza ed una fonte primaria di reddito. Accanto a questa constatazione vi è anche la consapevolezza che negli ultimi decenni gli ecosistemi naturali si stanno degradando ad un ritmo impressionate, senza precedenti nella storia della specie umana: consumiamo le risorse più velocemente di quanto la Terra sia capace di rigenerarle e di “metabolizzare” i nostri scarti. Allo stesso modo aumenta la povertà: attualmente ci sono 1,2 miliardi di persone che vivono con meno di un dollaro al giorno, mentre circa metà della popolazione mondiale sopravvive con meno di due dollari al giorno (UN). La connessione tra povertà ed ambiente non dipende solamente dalla scarsità di risorse che rende più difficili le condizioni di vita, ma anche dalla gestione delle stesse risorse naturali. Infatti in molti paesi o luoghi dove le risorse non sono carenti la popolazione più povera non vi ha accesso per motivi politici, economici e sociali. Inoltre se si paragona l’impronta ecologica con una misura riconosciuta dello “sviluppo umano”, l’Indice dello Sviluppo Umano (HDI) delle Nazioni Unite (Cfr. Cap 2), il rapporto dimostra chiaramente che ciò che noi accettiamo generalmente come “alto sviluppo” è molto lontano dal concetto di sviluppo sostenibile accettato universalmente, in quanto i paesi cosiddetti “sviluppati” sono quelli con una maggior impronta ecologica. Se allora lo “sviluppo” mette sotto pressione gli ecosistemi, dal cui benessere dipende direttamente il benessere dell’uomo, allora vuol dire che il concetto di “sviluppo” deve essere rivisitato, perché ha come conseguenza non il benessere del pianeta e delle popolazioni, ma il degrado ambientale e l’accrescimento delle disuguaglianze sociali. Quindi da una parte vi è la “società occidentale”, che promuove l’avanzamento della tecnologia e dell’industrializzazione per la crescita economica, spremendo un ecosistema sempre più stanco ed esausto al fine di ottenere dei benefici solo per una ristretta fetta della popolazione mondiale che segue un modello di vita consumistico degradando l’ambiente e sommergendolo di rifiuti; dall’altra parte ci sono le famiglie di contadini rurali, i “moradores” delle favelas o delle periferie delle grandi metropoli del Sud del Mondo, i senza terra, gli immigrati delle baraccopoli, i “waste pickers” delle periferie di Bombay che sopravvivono raccattando rifiuti, i profughi di guerre fatte per il controllo delle risorse, gli sfollati ambientali, gli eco-rifugiati, che vivono sotto la soglia di povertà, senza accesso alle risorse primarie per la sopravvivenza. La gestione sostenibile dell’ambiente, il produrre reddito dalla valorizzazione diretta dell’ecosistema e l’accesso alle risorse naturali sono tra gli strumenti più efficaci per migliorare le condizioni di vita degli individui, strumenti che possono anche garantire la distribuzione della ricchezza costruendo una società più equa, in quanto le merci ed i servizi dell’ecosistema fungono da beni per le comunità. La corretta gestione dell’ambiente e delle risorse quindi è di estrema importanza per la lotta alla povertà ed in questo caso il ruolo e la responsabilità dei tecnici ambientali è cruciale. Il lavoro di ricerca qui presentato, partendo dall’analisi del problema della gestione delle risorse naturali e dal suo stretto legame con la povertà, rivisitando il concetto tradizionale di “sviluppo” secondo i nuovi filoni di pensiero, vuole suggerire soluzioni e tecnologie per la gestione sostenibile delle risorse naturali che abbiano come obiettivo il benessere delle popolazioni più povere e degli ecosistemi, proponendo inoltre un metodo valutativo per la scelta delle alternative, soluzioni o tecnologie più adeguate al contesto di intervento. Dopo l’analisi dello “stato del Pianeta” (Capitolo 1) e delle risorse, sia a livello globale che a livello regionale, il secondo Capitolo prende in esame il concetto di povertà, di Paese in Via di Sviluppo (PVS), il concetto di “sviluppo sostenibile” e i nuovi filoni di pensiero: dalla teoria della Decrescita, al concetto di Sviluppo Umano. Dalla presa di coscienza dei reali fabbisogni umani, dall’analisi dello stato dell’ambiente, della povertà e delle sue diverse facce nei vari paesi, e dalla presa di coscienza del fallimento dell’economia della crescita (oggi visibile più che mai) si può comprendere che la soluzione per sconfiggere la povertà, il degrado dell’ambiente, e raggiungere lo sviluppo umano, non è il consumismo, la produzione, e nemmeno il trasferimento della tecnologia e l’industrializzazione; ma il “piccolo e bello” (F. Schumacher, 1982), ovvero gli stili di vita semplici, la tutela degli ecosistemi, e a livello tecnologico le “tecnologie appropriate”. Ed è proprio alle Tecnologie Appropriate a cui sono dedicati i Capitoli successivi (Capitolo 4 e Capitolo 5). Queste sono tecnologie semplici, a basso impatto ambientale, a basso costo, facilmente gestibili dalle comunità, tecnologie che permettono alle popolazioni più povere di avere accesso alle risorse naturali. Sono le tecnologie che meglio permettono, grazie alle loro caratteristiche, la tutela dei beni comuni naturali, quindi delle risorse e dell’ambiente, favorendo ed incentivando la partecipazione delle comunità locali e valorizzando i saperi tradizionali, grazie al coinvolgimento di tutti gli attori, al basso costo, alla sostenibilità ambientale, contribuendo all’affermazione dei diritti umani e alla salvaguardia dell’ambiente. Le Tecnologie Appropriate prese in esame sono quelle relative all’approvvigionamento idrico e alla depurazione dell’acqua tra cui: - la raccolta della nebbia, - metodi semplici per la perforazione di pozzi, - pompe a pedali e pompe manuali per l’approvvigionamento idrico, - la raccolta dell’acqua piovana, - il recupero delle sorgenti, - semplici metodi per la depurazione dell’acqua al punto d’uso (filtro in ceramica, filtro a sabbia, filtro in tessuto, disinfezione e distillazione solare). Il quinto Capitolo espone invece le Tecnolocie Appropriate per la gestione dei rifiuti nei PVS, in cui sono descritte: - soluzioni per la raccolta dei rifiuti nei PVS, - soluzioni per lo smaltimento dei rifiuti nei PVS, - semplici tecnologie per il riciclaggio dei rifiuti solidi. Il sesto Capitolo tratta tematiche riguardanti la Cooperazione Internazionale, la Cooperazione Decentrata e i progetti di Sviluppo Umano. Per progetti di sviluppo si intende, nell’ambito della Cooperazione, quei progetti che hanno come obiettivi la lotta alla povertà e il miglioramento delle condizioni di vita delle comunità beneficiarie dei PVS coinvolte nel progetto. All’interno dei progetti di cooperazione e di sviluppo umano gli interventi di tipo ambientale giocano un ruolo importante, visto che, come già detto, la povertà e il benessere delle popolazioni dipende dal benessere degli ecosistemi in cui vivono: favorire la tutela dell’ambiente, garantire l’accesso all’acqua potabile, la corretta gestione dei rifiuti e dei reflui nonché l’approvvigionamento energetico pulito sono aspetti necessari per permettere ad ogni individuo, soprattutto se vive in condizioni di “sviluppo”, di condurre una vita sana e produttiva. È importante quindi, negli interventi di sviluppo umano di carattere tecnico ed ambientale, scegliere soluzioni decentrate che prevedano l’adozione di Tecnologie Appropriate per contribuire a valorizzare l’ambiente e a tutelare la salute della comunità. I Capitoli 7 ed 8 prendono in esame i metodi per la valutazione degli interventi di sviluppo umano. Un altro aspetto fondamentale che rientra nel ruolo dei tecnici infatti è l’utilizzo di un corretto metodo valutativo per la scelta dei progetti possibili che tenga presente tutti gli aspetti, ovvero gli impatti sociali, ambientali, economici e che si cali bene alle realtà svantaggiate come quelle prese in considerazione in questo lavoro; un metodo cioè che consenta una valutazione specifica per i progetti di sviluppo umano e che possa permettere l’individuazione del progetto/intervento tecnologico e ambientale più appropriato ad ogni contesto specifico. Dall’analisi dei vari strumenti valutativi si è scelto di sviluppare un modello per la valutazione degli interventi di carattere ambientale nei progetti di Cooperazione Decentrata basato sull’Analisi Multi Criteria e sulla Analisi Gerarchica. L’oggetto di questa ricerca è stato quindi lo sviluppo di una metodologia, che tramite il supporto matematico e metodologico dell’Analisi Multi Criteria, permetta di valutare l’appropriatezza, la sostenibilità degli interventi di Sviluppo Umano di carattere ambientale, sviluppati all’interno di progetti di Cooperazione Internazionale e di Cooperazione Decentrata attraverso l’utilizzo di Tecnologie Appropriate. Nel Capitolo 9 viene proposta la metodologia, il modello di calcolo e i criteri su cui si basa la valutazione. I successivi capitoli (Capitolo 10 e Capitolo 11) sono invece dedicati alla sperimentazione della metodologia ai diversi casi studio: - “Progetto ambientale sulla gestione dei rifiuti presso i campi Profughi Saharawi”, Algeria, - “Programa 1 milhão de Cisternas, P1MC” e - “Programa Uma Terra e Duas Águas, P1+2”, Semi Arido brasiliano.

This work is an analysis of integrated urban waste management in the province of Bologna. It consists of five chapters and one enclosure. Primarily, it focuses on the legislative framework at european, national and local level. Then the study analyses the situation of urban waste system adopted in the reference territory from 2003 to 2007 to show its evolution process. Chapter 3 is based on considerations about the percentage of effective recover of materials derived from separate collection that has been reached in the province of Bologna in 2006. The following chapter describes the urban waste management at national level using dates of 2005 and 2006 by APAT (National Agency for environmental protection). Then, it has been made a comparison with Emilia-Romagna and district of Bologna. Chapter 5 focuses on the description of innovative strategies introduced in the district of Bologna to increase separate collection level and optimize waste management. In particular, it analyses two sperimental projects: one based on door to door collection and the other founded on an integrated collection system which provides the application of two collection models (door to door collection in industrial areas and collection by containers in urban ones). Finally, in the enclosure, it is also descrided best practices of waste management sector about collection models, treatment plants and innovative strategies available at that moment in Europe.

The hydrogen production in the green microalga Chlamydomonas reinhardtii was evaluated by means of a detailed physiological and biotechnological study. First, a wide screening of the hydrogen productivity was done on 22 strains of C. reinhardtii, most of which mutated at the level of the D1 protein. The screening revealed for the first time that mutations upon the D1 protein may result on an increased hydrogen production. Indeed, productions ranged between 0 and more than 500 mL hydrogen per liter of culture (Torzillo, Scoma et al., 2007a), the highest producer (L159I-N230Y) being up to 5 times more performant than the strain cc124 widely adopted in literature (Torzillo, Scoma, et al., 2007b). Improved productivities by D1 protein mutants were generally a result of high photosynthetic capabilities counteracted by high respiration rates. Optimization of culture conditions were addressed according to the results of the physiological study of selected strains. In a first step, the photobioreactor (PBR) was provided with a multiple-impeller stirring system designed, developed and tested by us, using the strain cc124. It was found that the impeller system was effectively able to induce regular and turbulent mixing, which led to improved photosynthetic yields by means of light/dark cycles. Moreover, improved mixing regime sustained higher respiration rates, compared to what obtained with the commonly used stir bar mixing system. As far as the results of the initial screening phase are considered, both these factors are relevant to the hydrogen production. Indeed, very high energy conversion efficiencies (light to hydrogen) were obtained with the impeller device, prooving that our PBR was a good tool to both improve and study photosynthetic processes (Giannelli, Scoma et al., 2009). In the second part of the optimization, an accurate analysis of all the positive features of the high performance strain L159I-N230Y pointed out, respect to the WT, it has: (1) a larger chlorophyll optical cross-section; (2) a higher electron transfer rate by PSII; (3) a higher respiration rate; (4) a higher efficiency of utilization of the hydrogenase; (5) a higher starch synthesis capability; (6) a higher per cell D1 protein amount; (7) a higher zeaxanthin synthesis capability (Torzillo, Scoma et al., 2009). These information were gathered with those obtained with the impeller mixing device to find out the best culture conditions to optimize productivity with strain L159I-N230Y. The main aim was to sustain as long as possible the direct PSII contribution, which leads to hydrogen production without net CO2 release. Finally, an outstanding maximum rate of 11.1 ± 1.0 mL/L/h was reached and maintained for 21.8 ± 7.7 hours, when the effective photochemical efficiency of PSII (ΔF/F'm) underwent a last drop to zero. If expressed in terms of chl (24.0 ± 2.2 µmoles/mg chl/h), these rates of production are 4 times higher than what reported in literature to date (Scoma et al., 2010a submitted). DCMU addition experiments confirmed the key role played by PSII in sustaining such rates. On the other hand, experiments carried out in similar conditions with the control strain cc124 showed an improved final productivity, but no constant PSII direct contribution. These results showed that, aside from fermentation processes, if proper conditions are supplied to selected strains, hydrogen production can be substantially enhanced by means of biophotolysis. A last study on the physiology of the process was carried out with the mutant IL. Although able to express and very efficiently utilize the hydrogenase enzyme, this strain was unable to produce hydrogen when sulfur deprived. However, in a specific set of experiments this goal was finally reached, pointing out that other than (1) a state 1-2 transition of the photosynthetic apparatus, (2) starch storage and (3) anaerobiosis establishment, a timely transition to the hydrogen production is also needed in sulfur deprivation to induce the process before energy reserves are driven towards other processes necessary for the survival of the cell. This information turned out to be crucial when moving outdoor for the hydrogen production in a tubular horizontal 50-liter PBR under sunlight radiation. First attempts with laboratory grown cultures showed that no hydrogen production under sulfur starvation can be induced if a previous adaptation of the culture is not pursued outdoor. Indeed, in these conditions the hydrogen production under direct sunlight radiation with C. reinhardtii was finally achieved for the first time in literature (Scoma et al., 2010b submitted). Experiments were also made to optimize productivity in outdoor conditions, with respect to the light dilution within the culture layers. Finally, a brief study of the anaerobic metabolism of C. reinhardtii during hydrogen oxidation has been carried out. This study represents a good integration to the understanding of the complex interplay of pathways that operate concomitantly in this microalga.

Age-related physiological changes in the gastrointestinal tract, as well as modification in lifestyle, nutritional behaviour, and functionality of the host immune system, inevitably affect the gut microbiota. The study presented here is focused on the application and comparison of two different microarray approaches for the characterization of the human gut microbiota, the HITChip and the HTF-Microb.Array, with particular attention to the effects of the aging process on the composition of this ecosystem. By using the Human Intestinal Tract Chip (HITChip), recently developed at the Wageningen University, The Netherland, we explored the age-related changes of gut microbiota during the whole adult lifespan, from young adults, through elderly to centenarians. We observed that the microbial composition and diversity of the gut ecosystem of young adults and seventy-years old people is highly similar but differs significantly from that of the centenarians. After 100 years of symbiotic association with the human host, the microbiota is characterized by a rearrangement in the Firmicutes population and an enrichment of facultative anaerobes. The presence of such a compromised microbiota in the centenarians is associated with an increased inflammation status, also known as inflamm-aging, as determined by a range of peripheral blood inflammatory markers. In parallel, we overtook the development of our own phylogenetic microarray with a lower number of targets, aiming the description of the human gut microbiota structure at high taxonomic level. The resulting chip was called High Taxonomic level Fingerprinting Microbiota Array (HTF-Microb.Array), and was based on the Ligase Detection Reaction (LDR) technology, which allowed us to develop a fast and sensitive tool for the fingerprint of the human gut microbiota in terms of presence/absence of the principal groups. The validation on artificial DNA mixes, as well as the pilot study involving eight healthy young adults, demonstrated that the HTF-Microb.Array can be used to successfully characterize the human gut microbiota, allowing us to obtain results which are in approximate accordance with the most recent characterizations. Conversely, the evaluation of the relative abundance of the target groups on the bases of the relative fluorescence intensity probes response still has some hindrances, as demonstrated by comparing the HTF.Microb.Array and HITChip high taxonomic level fingerprints of the same centenarians.

Bifidobacteria constitute up to 3% of the total microbiota and represent one of the most important healthpromoting bacterial groups of the human intestinal microflora. The presence of Bifidobacterium in the human gastrointestinal tract has been directly related to several health-promoting activities; however, to date, no information about the specific mechanisms of interaction with the host is available. The first health-promoting activities studied in these job was the oxalate-degrading activity. Oxalic acid occurs extensively in nature and plays diverse roles, especially in pathological processes. Due to its highly oxidizing effects, hyper absorption or abnormal synthesis of oxalate can cause serious acute disorders in mammals and be lethal in extreme cases. Intestinal oxalate-degrading bacteria could therefore be pivotal in maintaining oxalate homeostasis, reducing the risk of kidney stone development. In this study, the oxalate-degrading activity of 14 bifidobacterial strains was measured by a capillary electrophoresis technique. The oxc gene, encoding oxalyl-CoA decarboxylase, a key enzyme in oxalate catabolism, was isolated by probing a genomic library of B. animalis subsp. lactis BI07, which was one of the most active strains in the preliminary screening. The genetic and transcriptional organization of oxc flanking regions was determined, unravelling the presence of other two independently transcribed open reading frames, potentially responsible for B. animalis subsp. lactis ability to degrade oxalate. Transcriptional analysis, using real-time quantitative reverse transcription PCR, revealed that these genes were highly induced in cells first adapted to subinhibitory concentrations of oxalate and then exposed to pH 4.5. Acidic conditions were also a prerequisite for a significant oxalate degradation rate, which dramatically increased in oxalate pre-adapted cells, as demonstrated in fermentation experiments with different pH-controlled batch cultures. These findings provide new insights in the characterization of oxalate-degrading probiotic bacteria and may support the use of B. animalis subsp. lactis as a promising adjunct for the prophylaxis and management of oxalate-related kidney disease. In order to provide some insight into the molecular mechanisms involved in the interaction with the host, in the second part of the job, we investigated whether Bifidobacterium was able to capture human plasminogen on the cell surface. The binding of human plasminogen to Bifidobacterium was dependent on lysine residues of surface protein receptors. By using a proteomic approach, we identified six putative plasminogen-binding proteins in the cell wall fraction of three strain of Bifidobacterium. The data suggest that plasminogen binding to Bifidobactrium is due to the concerted action of a number of proteins located on the bacterial cell surface, some of which are highly conserved cytoplasmic proteins which have other essential cellular functions. Our findings represent a step forward in understanding the mechanisms involved in the Bifidobacterium-host interaction. In these job w studied a new approach based on to MALDI-TOF MS to measure the interaction between entire bacterial cells and host molecular target. MALDI-TOF (Matrix Assisted Laser Desorption Ionization-Time of Flight)—mass spectrometry has been applied, for the first time, in the investigation of whole Bifidobacterium cells-host target proteins interaction. In particular, by means of this technique, a dose dependent human plasminogen-binding activity has been shown for Bifidobacterium. The involvement of lysine binding sites on the bacterial cell surface has been proved. The obtained result was found to be consistent with that from well-established standard methodologies, thus the proposed MALDI-TOF approach has the potential to enter as a fast alternative method in the field of biorecognition studies involving in bacterial cells and proteins of human origin.